Wall clock time and date at job start Wed Apr 1 2020 03:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42893 * 109.47102 * 2 1 4 4 C 1.42904 * 114.00086 * 180.02562 * 3 2 1 5 5 H 1.08993 * 110.37067 * 30.73269 * 4 3 2 6 6 C 1.54005 * 110.32380 * 268.54702 * 4 3 2 7 7 N 1.47485 * 107.24392 * 242.31459 * 6 4 3 8 8 C 1.34786 * 127.03052 * 154.61643 * 7 6 4 9 9 O 1.21282 * 119.99889 * 180.02562 * 8 7 6 10 10 C 1.50697 * 120.00123 * 0.02562 * 8 7 6 11 11 O 1.42897 * 109.47287 * 180.02562 * 10 8 7 12 12 C 1.42902 * 114.00167 * 180.02562 * 11 10 8 13 13 H 1.08994 * 110.45733 * 27.38789 * 12 11 10 14 14 C 1.54506 * 110.51292 * 150.00009 * 12 11 10 15 15 C 1.54486 * 104.06350 * 118.64272 * 14 12 11 16 16 O 1.44422 * 104.80175 * 23.97773 * 15 14 12 17 17 C 1.44426 * 105.27685 * 319.48793 * 16 15 14 18 18 C 1.48377 * 105.79701 * 334.78511 * 7 6 4 19 19 C 1.54616 * 110.32746 * 152.92610 * 4 3 2 20 20 H 1.09002 * 110.74101 * 22.40505 * 19 4 3 21 21 C 1.52993 * 110.73834 * 259.25741 * 19 4 3 22 22 N 1.46504 * 109.47141 * 174.99819 * 21 19 4 23 23 C 1.36944 * 120.00094 * 179.97438 * 22 21 19 24 24 H 1.07999 * 119.99916 * 0.02562 * 23 22 21 25 25 C 1.38809 * 119.99746 * 180.02562 * 23 22 21 26 26 N 1.31622 * 120.00311 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99904 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47032 * 89.99280 * 27 25 23 29 29 H 1.48493 * 109.47216 * 209.99567 * 27 25 23 30 30 H 1.48505 * 109.46679 * 330.00040 * 27 25 23 31 31 H 1.09006 * 109.47495 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47187 * 299.99786 * 1 2 3 33 33 H 1.09004 * 109.47222 * 60.00374 * 1 2 3 34 34 H 1.09001 * 109.46793 * 240.00107 * 2 1 3 35 35 H 1.09000 * 109.47022 * 120.00089 * 2 1 3 36 36 H 1.09002 * 109.91501 * 1.77436 * 6 4 3 37 37 H 1.08999 * 109.90987 * 122.86047 * 6 4 3 38 38 H 1.09006 * 109.47325 * 300.00506 * 10 8 7 39 39 H 1.09007 * 109.47058 * 59.99864 * 10 8 7 40 40 H 1.09003 * 110.50785 * 237.28477 * 14 12 11 41 41 H 1.08998 * 110.50985 * 359.97438 * 14 12 11 42 42 H 1.08993 * 110.37109 * 142.81136 * 15 14 12 43 43 H 1.09000 * 110.37144 * 265.14831 * 15 14 12 44 44 H 1.09001 * 110.37279 * 281.68317 * 17 16 15 45 45 H 1.08999 * 110.37514 * 159.34461 * 17 16 15 46 46 H 1.09005 * 110.51886 * 280.62106 * 18 7 6 47 47 H 1.09006 * 110.83140 * 157.65823 * 18 7 6 48 48 H 1.08999 * 109.47449 * 295.00092 * 21 19 4 49 49 H 1.09004 * 109.47362 * 55.00114 * 21 19 4 50 50 H 0.96997 * 120.00159 * 0.02562 * 22 21 19 51 51 H 0.96995 * 119.99692 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8782 0.6146 -0.5231 6 6 3.9618 1.5386 1.4429 7 7 4.6262 2.8467 1.5938 8 6 4.8079 3.5378 2.7367 9 8 5.3751 4.6095 2.7135 10 6 4.3062 2.9788 4.0431 11 8 4.6158 3.8886 5.1007 12 6 4.1813 3.4509 6.3898 13 1 4.1396 2.3624 6.4285 14 6 5.1179 3.9964 7.4909 15 6 4.1956 4.8713 8.3687 16 8 2.8686 4.3465 8.1468 17 6 2.8039 4.0607 6.7326 18 6 5.0486 3.2451 0.2284 19 6 3.8640 2.7896 -0.6605 20 1 3.0543 3.5185 -0.6278 21 6 4.3217 2.5553 -2.1014 22 7 4.6114 3.8429 -2.7373 23 6 5.0407 3.8836 -4.0370 24 1 5.1652 2.9664 -4.5935 25 6 5.3157 5.1036 -4.6392 26 7 5.1635 6.2214 -3.9612 27 14 5.9006 5.1592 -6.4125 28 1 4.7276 5.2582 -7.3177 29 1 6.7777 6.3414 -6.6076 30 1 6.6613 3.9218 -6.7217 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.1342 1.4590 2.1478 37 1 4.6779 0.7360 1.6192 38 1 3.2265 2.8398 3.9882 39 1 4.7866 2.0195 4.2363 40 1 5.5374 3.1776 8.0755 41 1 5.9126 4.5996 7.0519 42 1 4.4703 4.7767 9.4192 43 1 4.2491 5.9135 8.0539 44 1 2.6440 4.9786 6.1669 45 1 2.0095 3.3435 6.5263 46 1 5.9641 2.7259 -0.0551 47 1 5.1846 4.3247 0.1643 48 1 5.2210 1.9395 -2.1015 49 1 3.5327 2.0461 -2.6550 50 1 4.5000 4.6667 -2.2374 51 1 5.3553 7.0739 -4.3822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263966691.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:21 Heat of formation + Delta-G solvation = -174.200459 kcal Electronic energy + Delta-G solvation = -30475.363394 eV Core-core repulsion = 26181.702664 eV Total energy + Delta-G solvation = -4293.660730 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.40330 -40.62201 -39.63541 -38.05583 -37.57145 -36.42304 -33.99167 -32.54208 -32.34684 -31.37299 -29.93199 -29.39450 -28.89700 -26.67450 -25.09014 -23.93375 -23.89911 -23.12125 -22.21083 -21.47220 -20.63505 -19.19470 -18.57669 -18.25930 -17.90079 -17.30618 -17.27589 -16.98649 -16.59426 -16.38894 -16.20915 -15.89037 -15.73756 -15.55062 -15.16549 -15.01690 -14.85015 -14.40393 -14.17419 -14.04202 -13.86553 -13.62496 -13.33929 -13.18039 -13.17824 -13.02621 -12.84297 -12.70242 -12.63428 -12.41367 -12.28965 -12.24455 -12.17256 -11.95460 -11.77393 -11.74148 -11.60560 -11.01594 -10.97462 -10.93087 -10.63019 -10.54634 -9.78317 -9.02148 -7.95095 -5.25288 1.45133 1.46610 1.49146 1.51645 1.57540 2.53837 2.59867 2.72193 3.08852 3.27855 3.38935 3.45473 3.52368 3.67412 3.79115 3.93449 3.97875 3.99909 4.09077 4.19222 4.23413 4.24243 4.28310 4.29733 4.30970 4.44768 4.49656 4.59544 4.61658 4.65536 4.67764 4.70329 4.75746 4.78761 4.83209 4.88649 4.94009 4.99288 5.04812 5.10929 5.13224 5.25818 5.36347 5.49149 5.62208 6.05803 6.25682 6.35318 6.43467 7.02837 7.31744 8.06814 8.28798 9.28659 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010871 B = 0.002402 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.998190 B =11655.452370 C =13634.837693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 O -0.397 6.397 4 C 0.092 3.908 5 H 0.107 0.893 6 C 0.079 3.921 7 N -0.617 5.617 8 C 0.521 3.479 9 O -0.581 6.581 10 C 0.056 3.944 11 O -0.383 6.383 12 C 0.052 3.948 13 H 0.111 0.889 14 C -0.155 4.155 15 C 0.040 3.960 16 O -0.390 6.390 17 C 0.020 3.980 18 C 0.121 3.879 19 C -0.095 4.095 20 H 0.066 0.934 21 C 0.167 3.833 22 N -0.748 5.748 23 C -0.243 4.243 24 H 0.082 0.918 25 C -0.080 4.080 26 N -0.973 5.973 27 Si 0.976 3.024 28 H -0.287 1.287 29 H -0.298 1.298 30 H -0.264 1.264 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.121 0.879 40 H 0.109 0.891 41 H 0.080 0.920 42 H 0.116 0.884 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.116 0.884 46 H 0.086 0.914 47 H 0.049 0.951 48 H 0.038 0.962 49 H 0.027 0.973 50 H 0.371 0.629 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.006 -19.191 23.602 31.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.030 4.030 3 O -0.316 6.316 4 C 0.033 3.967 5 H 0.124 0.876 6 C -0.043 4.043 7 N -0.352 5.352 8 C 0.311 3.689 9 O -0.460 6.460 10 C -0.023 4.023 11 O -0.302 6.302 12 C -0.006 4.006 13 H 0.129 0.871 14 C -0.193 4.193 15 C -0.036 4.036 16 O -0.309 6.309 17 C -0.057 4.057 18 C -0.001 4.001 19 C -0.115 4.115 20 H 0.084 0.916 21 C 0.041 3.959 22 N -0.390 5.390 23 C -0.374 4.374 24 H 0.100 0.900 25 C -0.272 4.272 26 N -0.624 5.624 27 Si 0.805 3.195 28 H -0.214 1.214 29 H -0.225 1.225 30 H -0.189 1.189 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.138 0.862 40 H 0.127 0.873 41 H 0.099 0.901 42 H 0.134 0.866 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.135 0.865 46 H 0.104 0.896 47 H 0.068 0.932 48 H 0.056 0.944 49 H 0.045 0.955 50 H 0.202 0.798 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.843 -18.382 23.679 30.540 hybrid contribution 0.443 1.021 -1.362 1.759 sum -5.399 -17.361 22.316 28.785 Atomic orbital electron populations 1.21777 0.93587 1.03273 1.02290 1.22792 0.95914 0.82607 1.01643 1.88019 1.20119 1.28569 1.94918 1.22933 0.81938 0.97303 0.94513 0.87561 1.22989 0.98843 0.84403 0.98068 1.48794 1.57936 1.22317 1.06146 1.20744 0.78982 0.83895 0.85295 1.90745 1.44538 1.23866 1.86833 1.22365 1.02334 0.93774 0.83844 1.88080 1.80601 1.45949 1.15527 1.23789 0.93665 1.00710 0.82430 0.87076 1.23078 0.98718 1.01574 0.95911 1.23575 0.81215 0.97015 1.01812 1.89118 1.33279 1.84336 1.24138 1.24044 0.98572 1.00833 0.82294 1.22364 0.97276 1.00332 0.80155 1.22351 0.96837 0.97942 0.94366 0.91601 1.20762 0.97343 0.87959 0.89867 1.42618 1.80740 1.03884 1.11784 1.19662 1.35219 0.92907 0.89629 0.90005 1.25653 1.03696 0.95189 1.02701 1.69849 1.57145 0.97296 1.38089 0.85096 0.77551 0.77105 0.79746 1.21419 1.22526 1.18904 0.88933 0.92102 0.93548 0.92678 0.90586 0.87571 0.86871 0.87473 0.86166 0.87289 0.90122 0.86635 0.92667 0.92846 0.86549 0.89595 0.93219 0.94407 0.95462 0.79789 0.94116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 10.28 71.98 0.74 -1.34 16 2 C 0.05 0.66 6.51 71.98 0.47 1.13 16 3 O -0.40 -8.89 9.94 -148.98 -1.48 -10.37 16 4 C 0.09 1.94 3.03 31.48 0.10 2.03 16 5 H 0.11 1.76 7.56 -2.39 -0.02 1.74 16 6 C 0.08 1.26 6.56 86.53 0.57 1.83 16 7 N -0.62 -16.15 3.30 -808.69 -2.67 -18.82 16 8 C 0.52 15.35 7.97 87.65 0.70 16.05 16 9 O -0.58 -24.36 16.73 16.00 0.27 -24.09 16 10 C 0.06 0.99 5.33 71.23 0.38 1.37 16 11 O -0.38 -8.72 9.51 -129.94 -1.24 -9.96 16 12 C 0.05 0.77 3.61 31.61 0.11 0.88 16 13 H 0.11 0.94 7.82 -2.39 -0.02 0.92 16 14 C -0.16 -2.13 6.90 31.61 0.22 -1.91 16 15 C 0.04 0.59 7.63 72.49 0.55 1.14 16 16 O -0.39 -7.32 11.65 -148.98 -1.74 -9.06 16 17 C 0.02 0.32 7.38 72.49 0.53 0.85 16 18 C 0.12 4.01 6.46 86.68 0.56 4.57 16 19 C -0.10 -3.04 2.81 -9.58 -0.03 -3.07 16 20 H 0.07 2.51 8.08 -2.39 -0.02 2.49 16 21 C 0.17 6.39 5.58 86.38 0.48 6.87 16 22 N -0.75 -38.57 5.52 -343.45 -1.90 -40.46 16 23 C -0.24 -13.63 9.99 84.03 0.84 -12.79 16 24 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 25 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 26 N -0.97 -61.89 13.06 21.65 0.28 -61.61 16 27 Si 0.98 46.87 29.55 68.60 2.03 48.89 16 28 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 29 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 30 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 31 H 0.09 0.81 8.14 -2.38 -0.02 0.80 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 0.75 8.10 -2.39 -0.02 0.74 16 35 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.11 1.21 7.36 -2.39 -0.02 1.19 16 37 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 1.33 7.91 -2.38 -0.02 1.31 16 39 H 0.12 1.18 8.11 -2.38 -0.02 1.16 16 40 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 1.36 8.00 -2.39 -0.02 1.34 16 42 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.05 1.07 8.08 -2.39 -0.02 1.05 16 45 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.09 2.68 7.95 -2.38 -0.02 2.66 16 47 H 0.05 2.08 7.87 -2.38 -0.02 2.06 16 48 H 0.04 1.35 8.00 -2.39 -0.02 1.33 16 49 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 50 H 0.37 21.00 7.67 -92.71 -0.71 20.29 16 51 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -83.73 416.24 0.45 -83.28 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 0.20 Total: 28.83 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 6.69 Total: 13.37 kcal Atomic # 7 Polarization: -116.60 SS G_CDS: -4.29 Total: -120.89 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -4.18 Total: -53.49 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.89 kcal Total: -83.73 0.45 -83.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263966691.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.921 kcal (2) G-P(sol) polarization free energy of solvation -83.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds