Wall clock time and date at job start Wed Apr 1 2020 03:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47109 * 2 1 4 4 C 1.42900 * 113.99728 * 179.97438 * 3 2 1 5 5 H 1.08995 * 110.29063 * 30.68627 * 4 3 2 6 6 C 1.53997 * 110.32938 * 268.54580 * 4 3 2 7 7 N 1.47483 * 107.08762 * 242.41750 * 6 4 3 8 8 C 1.34779 * 127.03375 * 154.52062 * 7 6 4 9 9 O 1.21282 * 119.99922 * 180.02562 * 8 7 6 10 10 C 1.50699 * 120.00037 * 0.02562 * 8 7 6 11 11 O 1.42905 * 109.46972 * 180.02562 * 10 8 7 12 12 C 1.42899 * 113.99778 * 180.02562 * 11 10 8 13 13 H 1.08996 * 110.43745 * 328.90520 * 12 11 10 14 14 C 1.54810 * 110.48676 * 206.22019 * 12 11 10 15 15 C 1.54999 * 102.09309 * 220.44248 * 14 12 11 16 16 O 1.44384 * 103.48897 * 37.02363 * 15 14 12 17 17 C 1.43744 * 106.97347 * 319.93759 * 16 15 14 18 18 C 1.48118 * 105.93194 * 334.77900 * 7 6 4 19 19 C 1.54594 * 103.42006 * 39.02239 * 18 7 6 20 20 H 1.09007 * 110.73030 * 81.24486 * 19 18 7 21 21 C 1.52997 * 110.83409 * 204.44241 * 19 18 7 22 22 N 1.46498 * 109.47662 * 288.56722 * 21 19 18 23 23 C 1.36934 * 120.00219 * 179.97438 * 22 21 19 24 24 H 1.07998 * 120.00042 * 359.97438 * 23 22 21 25 25 C 1.38819 * 119.99730 * 179.97438 * 23 22 21 26 26 N 1.31617 * 120.00018 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99597 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.46995 * 90.00381 * 27 25 23 29 29 H 1.48508 * 109.46767 * 210.00033 * 27 25 23 30 30 H 1.48494 * 109.47191 * 329.99861 * 27 25 23 31 31 H 1.08996 * 109.47510 * 59.99661 * 1 2 3 32 32 H 1.09001 * 109.47180 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46883 * 299.99594 * 1 2 3 34 34 H 1.09004 * 109.46883 * 240.00405 * 2 1 3 35 35 H 1.08996 * 109.47510 * 120.00339 * 2 1 3 36 36 H 1.09000 * 109.91495 * 123.05634 * 6 4 3 37 37 H 1.08996 * 109.91651 * 1.78136 * 6 4 3 38 38 H 1.09000 * 109.47247 * 60.00371 * 10 8 7 39 39 H 1.09001 * 109.47358 * 299.99798 * 10 8 7 40 40 H 1.09005 * 110.90813 * 338.63994 * 14 12 11 41 41 H 1.08997 * 110.91296 * 102.24572 * 14 12 11 42 42 H 1.08994 * 110.61955 * 278.52142 * 15 14 12 43 43 H 1.08997 * 110.61889 * 155.51829 * 15 14 12 44 44 H 1.09000 * 109.88374 * 267.09276 * 17 16 15 45 45 H 1.09008 * 110.00405 * 146.01168 * 17 16 15 46 46 H 1.08996 * 110.65997 * 157.50711 * 18 7 6 47 47 H 1.09000 * 110.66189 * 280.62142 * 18 7 6 48 48 H 1.09001 * 109.46717 * 48.56497 * 21 19 18 49 49 H 1.09002 * 109.47377 * 168.55956 * 21 19 18 50 50 H 0.97002 * 119.99535 * 359.97438 * 22 21 19 51 51 H 0.97006 * 119.99609 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8772 0.6134 -0.5208 6 6 3.9607 1.5390 1.4444 7 7 4.6220 2.8490 1.5923 8 6 4.8009 3.5437 2.7333 9 8 5.3657 4.6167 2.7076 10 6 4.2992 2.9874 4.0408 11 8 4.6057 3.9010 5.0961 12 6 4.1709 3.4660 6.3860 13 1 3.2683 2.8611 6.2994 14 6 3.9252 4.6811 7.3132 15 6 4.5024 4.1819 8.6624 16 8 5.6565 3.4085 8.2694 17 6 5.2868 2.6717 7.0919 18 6 5.0435 3.2478 0.2295 19 6 3.8646 2.7894 -0.6593 20 1 3.0537 3.5173 -0.6304 21 6 4.3275 2.5542 -2.0985 22 7 4.6179 3.8414 -2.7347 23 6 5.0515 3.8812 -4.0330 24 1 5.1799 2.9635 -4.5877 25 6 5.3261 5.1010 -4.6360 26 7 5.1701 6.2193 -3.9597 27 14 5.9170 5.1552 -6.4072 28 1 4.7470 5.2507 -7.3166 29 1 6.7925 6.3391 -6.6009 30 1 6.6814 3.9192 -6.7121 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 4.6792 0.7385 1.6205 37 1 3.1326 1.4596 2.1486 38 1 4.7816 2.0298 4.2372 39 1 3.2198 2.8459 3.9853 40 1 4.4680 5.5572 6.9583 41 1 2.8600 4.8944 7.4010 42 1 3.7779 3.5539 9.1809 43 1 4.7993 5.0238 9.2878 44 1 4.9187 1.6848 7.3725 45 1 6.1466 2.5717 6.4293 46 1 5.1732 4.3283 0.1679 47 1 5.9606 2.7324 -0.0557 48 1 5.2277 1.9396 -2.0946 49 1 3.5412 2.0433 -2.6542 50 1 4.5029 4.6656 -2.2363 51 1 5.3623 7.0717 -4.3810 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263966692.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:25 Heat of formation + Delta-G solvation = -174.600815 kcal Electronic energy + Delta-G solvation = -30450.719210 eV Core-core repulsion = 26157.041119 eV Total energy + Delta-G solvation = -4293.678091 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.42778 -40.62308 -39.63639 -38.04851 -37.57767 -36.42940 -33.99705 -32.55981 -32.36210 -31.38889 -29.93012 -29.40983 -28.92625 -26.68935 -25.10162 -23.90245 -23.69721 -23.11649 -22.33759 -21.47145 -20.61448 -19.19545 -18.59166 -18.33430 -17.85038 -17.34116 -17.26261 -17.00969 -16.60858 -16.45531 -16.30776 -15.82984 -15.65658 -15.53247 -15.22780 -15.03540 -14.83468 -14.37726 -14.16513 -13.94415 -13.65359 -13.63808 -13.37010 -13.20207 -13.15141 -13.03237 -12.84363 -12.77066 -12.67406 -12.41675 -12.39672 -12.24506 -12.17553 -11.95701 -11.75966 -11.72836 -11.60745 -11.02412 -10.98123 -10.93221 -10.55289 -10.48889 -9.78748 -9.02391 -7.95276 -5.25424 1.45297 1.46446 1.49040 1.52020 1.57439 2.53713 2.64334 2.74023 2.97256 3.27379 3.38733 3.45271 3.48509 3.68859 3.86576 3.96757 3.99856 4.01149 4.08063 4.18492 4.21411 4.23732 4.28306 4.30915 4.36147 4.44581 4.49734 4.54476 4.59493 4.61939 4.67677 4.72641 4.75434 4.80045 4.82910 4.88468 4.94061 5.02732 5.06041 5.11225 5.13358 5.25613 5.36469 5.48948 5.80745 6.05693 6.25449 6.35089 6.43075 7.02782 7.31508 8.06604 8.28639 9.28494 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.002381 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.361210 B =11757.040586 C =13800.183204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 O -0.396 6.396 4 C 0.092 3.908 5 H 0.106 0.894 6 C 0.079 3.921 7 N -0.616 5.616 8 C 0.520 3.480 9 O -0.581 6.581 10 C 0.056 3.944 11 O -0.386 6.386 12 C 0.049 3.951 13 H 0.115 0.885 14 C -0.156 4.156 15 C 0.046 3.954 16 O -0.405 6.405 17 C 0.021 3.979 18 C 0.121 3.879 19 C -0.095 4.095 20 H 0.066 0.934 21 C 0.167 3.833 22 N -0.748 5.748 23 C -0.243 4.243 24 H 0.082 0.918 25 C -0.081 4.081 26 N -0.973 5.973 27 Si 0.977 3.023 28 H -0.287 1.287 29 H -0.299 1.299 30 H -0.265 1.265 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.065 0.935 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.049 0.951 47 H 0.085 0.915 48 H 0.038 0.962 49 H 0.028 0.972 50 H 0.371 0.629 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.173 -19.320 24.144 32.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.030 4.030 3 O -0.316 6.316 4 C 0.033 3.967 5 H 0.124 0.876 6 C -0.043 4.043 7 N -0.351 5.351 8 C 0.310 3.690 9 O -0.461 6.461 10 C -0.023 4.023 11 O -0.305 6.305 12 C -0.008 4.008 13 H 0.133 0.867 14 C -0.194 4.194 15 C -0.030 4.030 16 O -0.325 6.325 17 C -0.056 4.056 18 C -0.002 4.002 19 C -0.115 4.115 20 H 0.085 0.915 21 C 0.041 3.959 22 N -0.390 5.390 23 C -0.374 4.374 24 H 0.100 0.900 25 C -0.273 4.273 26 N -0.624 5.624 27 Si 0.805 3.195 28 H -0.214 1.214 29 H -0.225 1.225 30 H -0.189 1.189 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.084 0.916 41 H 0.129 0.871 42 H 0.107 0.893 43 H 0.121 0.879 44 H 0.112 0.888 45 H 0.095 0.905 46 H 0.067 0.933 47 H 0.103 0.897 48 H 0.055 0.945 49 H 0.046 0.954 50 H 0.202 0.798 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.639 -18.493 24.161 31.628 hybrid contribution 0.305 0.910 -1.325 1.636 sum -8.333 -17.583 22.836 30.001 Atomic orbital electron populations 1.21775 0.93543 1.03276 1.02308 1.22798 0.95943 0.82599 1.01641 1.88018 1.20083 1.28576 1.94917 1.22930 0.81963 0.97269 0.94500 0.87594 1.23004 0.98880 0.84286 0.98108 1.48741 1.58082 1.22157 1.06158 1.20771 0.78966 0.83900 0.85377 1.90749 1.44586 1.23905 1.86819 1.22352 1.02452 0.93707 0.83796 1.88109 1.81282 1.45436 1.15629 1.23889 0.97634 0.96809 0.82474 0.86694 1.23281 1.03804 0.97837 0.94472 1.23745 0.87712 0.95752 0.95747 1.88873 1.36982 1.62157 1.44475 1.23866 0.98740 0.95809 0.87147 1.22255 0.97349 1.00289 0.80293 1.22293 0.96855 0.97959 0.94368 0.91547 1.20765 0.97318 0.87964 0.89894 1.42614 1.80564 1.03863 1.11975 1.19663 1.35137 0.92894 0.89737 0.90001 1.25659 1.03695 0.95183 1.02729 1.69852 1.57099 0.97289 1.38144 0.85092 0.77566 0.77091 0.79721 1.21372 1.22539 1.18920 0.93556 0.88935 0.92050 0.92719 0.90569 0.86919 0.87428 0.86587 0.86969 0.91596 0.87059 0.89260 0.87905 0.88801 0.90455 0.93267 0.89700 0.94462 0.95424 0.79796 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.05 0.65 6.51 71.98 0.47 1.12 16 3 O -0.40 -8.83 9.94 -148.98 -1.48 -10.31 16 4 C 0.09 1.95 3.04 31.48 0.10 2.04 16 5 H 0.11 1.77 7.56 -2.39 -0.02 1.75 16 6 C 0.08 1.27 6.57 86.53 0.57 1.84 16 7 N -0.62 -16.38 3.29 -810.11 -2.67 -19.05 16 8 C 0.52 15.66 7.97 87.66 0.70 16.36 16 9 O -0.58 -24.97 16.71 16.00 0.27 -24.71 16 10 C 0.06 1.02 5.36 71.24 0.38 1.40 16 11 O -0.39 -9.18 9.49 -129.94 -1.23 -10.41 16 12 C 0.05 0.73 3.51 31.58 0.11 0.84 16 13 H 0.12 0.84 7.86 -2.39 -0.02 0.82 16 14 C -0.16 -2.24 6.90 31.90 0.22 -2.02 16 15 C 0.05 0.58 7.72 72.67 0.56 1.14 16 16 O -0.41 -7.97 11.52 -148.98 -1.72 -9.69 16 17 C 0.02 0.32 7.52 72.35 0.54 0.86 16 18 C 0.12 4.05 6.44 86.61 0.56 4.60 16 19 C -0.09 -3.05 2.80 -9.70 -0.03 -3.07 16 20 H 0.07 2.53 8.08 -2.38 -0.02 2.51 16 21 C 0.17 6.42 5.58 86.38 0.48 6.90 16 22 N -0.75 -38.71 5.52 -343.45 -1.90 -40.61 16 23 C -0.24 -13.68 9.99 84.04 0.84 -12.84 16 24 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 25 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 26 N -0.97 -62.08 13.06 21.65 0.28 -61.80 16 27 Si 0.98 47.01 29.55 68.60 2.03 49.04 16 28 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 29 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 30 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.05 0.74 8.10 -2.38 -0.02 0.72 16 35 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.11 1.21 7.36 -2.39 -0.02 1.19 16 38 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.11 1.34 7.88 -2.39 -0.02 1.32 16 40 H 0.07 1.33 8.09 -2.38 -0.02 1.31 16 41 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.08 1.39 7.97 -2.38 -0.02 1.37 16 46 H 0.05 2.09 7.85 -2.39 -0.02 2.07 16 47 H 0.08 2.70 7.93 -2.39 -0.02 2.68 16 48 H 0.04 1.34 7.99 -2.39 -0.02 1.32 16 49 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.37 21.08 7.67 -92.71 -0.71 20.37 16 51 H 0.25 15.50 8.31 -92.70 -0.77 14.73 16 Total: -1.00 -85.98 416.12 0.49 -85.50 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.20 Total: 28.44 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 6.71 Total: 13.59 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -4.28 Total: -121.45 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -4.16 Total: -55.12 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -85.98 0.49 -85.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263966692.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.104 kcal (2) G-P(sol) polarization free energy of solvation -85.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds