Wall clock time and date at job start Wed Apr 1 2020 03:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.39873 * 125.45606 * 2 1 4 4 C 1.30246 * 110.08199 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.10473 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.46711 * 269.99366 * 5 4 3 7 7 O 1.21282 * 120.00289 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99819 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99948 * 180.02562 * 8 6 5 10 10 C 1.52991 * 109.47171 * 179.97438 * 9 8 6 11 11 H 1.08997 * 110.64546 * 56.68337 * 10 9 8 12 12 C 1.55165 * 110.72142 * 180.02562 * 10 9 8 13 13 C 1.54909 * 101.58299 * 153.86427 * 12 10 9 14 14 N 1.47433 * 104.83285 * 322.99413 * 13 12 10 15 15 C 1.36932 * 125.64563 * 204.16809 * 14 13 12 16 16 H 1.08001 * 119.99772 * 161.47243 * 15 14 13 17 17 C 1.38810 * 120.00218 * 341.46471 * 15 14 13 18 18 N 1.31618 * 120.00192 * 157.62105 * 17 15 14 19 19 Si 1.86796 * 119.99855 * 337.62465 * 17 15 14 20 20 H 1.48503 * 109.47302 * 84.53510 * 19 17 15 21 21 H 1.48507 * 109.47121 * 204.53028 * 19 17 15 22 22 H 1.48499 * 109.47336 * 324.53195 * 19 17 15 23 23 C 1.47021 * 108.70274 * 24.12408 * 14 13 12 24 24 C 1.45928 * 107.78839 * 359.96304 * 4 3 2 25 25 C 1.39944 * 134.03995 * 180.02562 * 24 4 3 26 26 C 1.36459 * 119.63780 * 179.97438 * 25 24 4 27 27 C 1.38968 * 120.63413 * 0.02562 * 26 25 24 28 28 C 1.36596 * 120.80890 * 0.02562 * 27 26 25 29 29 C 1.37031 * 125.46602 * 180.02562 * 2 1 3 30 30 H 1.08992 * 109.47278 * 269.97333 * 1 2 3 31 31 H 1.08999 * 109.47460 * 29.97663 * 1 2 3 32 32 H 1.09004 * 109.46895 * 149.97727 * 1 2 3 33 33 H 1.08999 * 109.47438 * 29.99098 * 5 4 3 34 34 H 1.09003 * 109.47412 * 149.99664 * 5 4 3 35 35 H 0.96993 * 120.00078 * 359.97438 * 8 6 5 36 36 H 1.08999 * 109.46867 * 299.99606 * 9 8 6 37 37 H 1.09003 * 109.46893 * 59.99503 * 9 8 6 38 38 H 1.08997 * 110.99981 * 271.93772 * 12 10 9 39 39 H 1.08997 * 110.99969 * 35.79080 * 12 10 9 40 40 H 1.08996 * 110.36915 * 204.15616 * 13 12 10 41 41 H 1.09003 * 110.46167 * 81.87613 * 13 12 10 42 42 H 0.96995 * 120.00448 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.88368 * 239.52561 * 23 14 13 44 44 H 1.08999 * 110.00891 * 118.43257 * 23 14 13 45 45 H 1.08000 * 120.17607 * 0.23392 * 25 24 4 46 46 H 1.07995 * 119.68542 * 180.02562 * 26 25 24 47 47 H 1.07995 * 119.59671 * 179.97438 * 27 26 25 48 48 H 1.07996 * 120.07282 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2764 1.1394 0.0000 4 6 3.5323 0.7940 -0.0005 5 6 4.7113 1.7326 -0.0013 6 6 5.1037 2.0450 -1.4224 7 8 4.4869 1.5536 -2.3439 8 7 6.1406 2.8698 -1.6694 9 6 6.5217 3.1740 -3.0509 10 6 7.7187 4.1267 -3.0517 11 1 8.5506 3.6991 -2.4921 12 6 8.1468 4.4692 -4.5033 13 6 8.8138 5.8542 -4.3123 14 7 8.0000 6.5263 -3.2829 15 6 7.8925 7.8803 -3.1091 16 1 7.0663 8.2885 -2.5458 17 6 8.8453 8.7283 -3.6566 18 7 8.5494 9.9901 -3.8858 19 14 10.5476 8.0785 -4.0682 20 1 10.5257 7.4504 -5.4137 21 1 11.5206 9.2004 -4.0615 22 1 10.9498 7.0683 -3.0568 23 6 7.3223 5.5021 -2.4747 24 6 3.5938 -0.6639 -0.0001 25 6 4.6398 -1.5935 0.0002 26 6 4.3564 -2.9284 0.0012 27 6 3.0397 -3.3727 0.0015 28 6 2.0017 -2.4848 0.0002 29 6 2.2601 -1.1161 -0.0005 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 4.4415 2.6553 0.5124 34 1 5.5501 1.2627 0.5123 35 1 6.6341 3.2626 -0.9325 36 1 6.7909 2.2514 -3.5650 37 1 5.6829 3.6445 -3.5639 38 1 8.8627 3.7397 -4.8818 39 1 7.2796 4.5404 -5.1598 40 1 8.7889 6.4191 -5.2441 41 1 9.8413 5.7380 -3.9673 42 1 9.2153 10.5828 -4.2681 43 1 6.2423 5.6338 -2.5391 44 1 7.6431 5.5745 -1.4355 45 1 5.6658 -1.2562 0.0038 46 1 5.1631 -3.6464 0.0018 47 1 2.8345 -4.4330 0.0019 48 1 0.9829 -2.8432 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266513797.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:25 Heat of formation + Delta-G solvation = 52.546018 kcal Electronic energy + Delta-G solvation = -28662.107088 eV Core-core repulsion = 24717.880493 eV Total energy + Delta-G solvation = -3944.226595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.30599 -40.75058 -39.45564 -38.11726 -36.09263 -35.09847 -34.43063 -32.40091 -31.36135 -31.16720 -30.74556 -29.93885 -27.58095 -26.50271 -24.87921 -23.87198 -22.87837 -22.75729 -21.79064 -21.22855 -20.49018 -18.93287 -18.13141 -18.00909 -17.89435 -17.21647 -17.14182 -16.60515 -16.39127 -16.17374 -16.06889 -15.45942 -15.15036 -14.98635 -14.93736 -14.71440 -14.34563 -14.18645 -13.92555 -13.83838 -13.70473 -13.51330 -13.24882 -13.07753 -12.96904 -12.72858 -12.65817 -12.60754 -12.23538 -12.01384 -11.94965 -11.80689 -11.67611 -11.60586 -11.35766 -11.11614 -10.80887 -10.75195 -10.06573 -9.62992 -9.03936 -8.79390 -8.17840 -5.44387 0.00637 0.58640 1.31964 1.32857 1.39713 1.46302 1.49444 1.64344 2.30747 2.42467 2.89301 3.03787 3.32266 3.33172 3.49085 3.70283 3.72031 3.86506 3.90449 3.95337 4.12622 4.18020 4.32875 4.38191 4.40932 4.41526 4.46094 4.48910 4.56780 4.58811 4.63421 4.67517 4.80471 4.84268 4.85720 4.96758 5.04240 5.09226 5.10333 5.21112 5.38145 5.41803 5.48729 5.54581 5.62863 5.68877 5.93834 6.10178 6.13909 6.57223 6.62273 6.77637 7.26472 7.54883 8.11454 9.02177 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.024077 B = 0.001954 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.675156 B =14325.650523 C =15018.163661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.419 5.419 3 N -0.281 5.281 4 C 0.107 3.893 5 C -0.059 4.059 6 C 0.519 3.481 7 O -0.582 6.582 8 N -0.714 5.714 9 C 0.143 3.857 10 C -0.094 4.094 11 H 0.111 0.889 12 C -0.112 4.112 13 C 0.099 3.901 14 N -0.630 5.630 15 C -0.236 4.236 16 H 0.054 0.946 17 C -0.043 4.043 18 N -0.959 5.959 19 Si 0.953 3.047 20 H -0.270 1.270 21 H -0.310 1.310 22 H -0.263 1.263 23 C 0.134 3.866 24 C -0.193 4.193 25 C -0.051 4.051 26 C -0.163 4.163 27 C -0.069 4.069 28 C -0.152 4.152 29 C 0.104 3.896 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.131 0.869 34 H 0.156 0.844 35 H 0.418 0.582 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.036 0.964 41 H 0.030 0.970 42 H 0.262 0.738 43 H 0.022 0.978 44 H 0.040 0.960 45 H 0.143 0.857 46 H 0.153 0.847 47 H 0.160 0.840 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.116 -32.134 11.257 35.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.208 5.208 3 N -0.094 5.094 4 C -0.070 4.070 5 C -0.100 4.100 6 C 0.305 3.695 7 O -0.462 6.462 8 N -0.366 5.366 9 C 0.019 3.981 10 C -0.113 4.113 11 H 0.129 0.871 12 C -0.150 4.150 13 C -0.025 4.025 14 N -0.357 5.357 15 C -0.365 4.365 16 H 0.072 0.928 17 C -0.237 4.237 18 N -0.606 5.606 19 Si 0.781 3.219 20 H -0.195 1.195 21 H -0.238 1.238 22 H -0.188 1.188 23 C 0.010 3.990 24 C -0.201 4.201 25 C -0.071 4.071 26 C -0.182 4.182 27 C -0.089 4.089 28 C -0.174 4.174 29 C -0.011 4.011 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.149 0.851 34 H 0.174 0.826 35 H 0.255 0.745 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.125 0.875 39 H 0.090 0.910 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.071 0.929 43 H 0.040 0.960 44 H 0.058 0.942 45 H 0.160 0.840 46 H 0.170 0.830 47 H 0.178 0.822 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.585 -31.258 10.582 34.657 hybrid contribution 1.035 0.601 -0.085 1.200 sum -9.550 -30.658 10.496 33.783 Atomic orbital electron populations 1.22004 0.72394 1.05160 1.04116 1.48365 1.06830 1.00692 1.64896 1.76439 1.03056 1.10208 1.19740 1.23058 0.92556 0.92480 0.98950 1.20182 0.95171 1.00340 0.94276 1.20704 0.79392 0.78006 0.91361 1.90727 1.54152 1.53424 1.47896 1.45862 1.33171 1.48084 1.09519 1.21184 0.95600 0.98289 0.83017 1.22347 0.98029 0.93413 0.97529 0.87119 1.22696 1.01138 0.95218 0.95977 1.22117 0.94451 0.94128 0.91803 1.44901 1.55026 1.01320 1.34488 1.18569 1.06010 0.80711 1.31222 0.92782 1.25713 1.02133 0.95282 1.00543 1.69987 1.35371 1.06917 1.48311 0.85853 0.80750 0.76317 0.78996 1.19542 1.23822 1.18850 1.21589 0.95311 0.87705 0.94444 1.20047 0.94298 0.92661 1.13103 1.20659 0.98156 0.92530 0.95752 1.21062 0.97858 0.95303 1.03991 1.21163 0.91834 1.00741 0.95168 1.20162 1.01665 0.87843 1.07719 1.19297 0.90783 0.90592 1.00389 0.89790 0.89779 0.87746 0.85065 0.82646 0.74519 0.90212 0.93478 0.87465 0.91028 0.94619 0.95204 0.92917 0.95960 0.94172 0.83955 0.82953 0.82233 0.83757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.50 11.40 127.77 1.46 2.96 16 2 N -0.42 -10.02 4.05 -361.04 -1.46 -11.48 16 3 N -0.28 -7.96 12.40 -43.70 -0.54 -8.50 16 4 C 0.11 2.66 5.92 44.79 0.27 2.93 16 5 C -0.06 -1.02 6.30 29.10 0.18 -0.84 16 6 C 0.52 12.47 7.82 87.66 0.69 13.15 16 7 O -0.58 -19.97 16.03 -3.04 -0.05 -20.02 16 8 N -0.71 -14.41 5.40 -463.06 -2.50 -16.91 16 9 C 0.14 3.42 4.99 86.38 0.43 3.85 16 10 C -0.09 -2.41 3.02 -9.60 -0.03 -2.44 16 11 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 12 C -0.11 -3.20 6.53 31.99 0.21 -2.99 16 13 C 0.10 4.03 4.70 86.85 0.41 4.44 16 14 N -0.63 -29.80 3.21 -691.97 -2.22 -32.02 16 15 C -0.24 -13.77 10.57 84.03 0.89 -12.89 16 16 H 0.05 3.44 8.06 -2.91 -0.02 3.42 16 17 C -0.04 -2.54 5.43 84.86 0.46 -2.08 16 18 N -0.96 -61.49 13.97 21.65 0.30 -61.19 16 19 Si 0.95 46.79 24.27 68.60 1.66 48.46 16 20 H -0.27 -12.43 6.49 99.48 0.65 -11.78 16 21 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 22 H -0.26 -12.20 6.66 99.48 0.66 -11.54 16 23 C 0.13 4.81 6.52 86.73 0.57 5.37 16 24 C -0.19 -4.50 6.33 -20.24 -0.13 -4.63 16 25 C -0.05 -0.88 10.07 22.27 0.22 -0.66 16 26 C -0.16 -2.17 9.97 22.03 0.22 -1.95 16 27 C -0.07 -0.85 9.96 22.06 0.22 -0.63 16 28 C -0.15 -2.41 9.97 22.14 0.22 -2.18 16 29 C 0.10 2.35 6.87 39.21 0.27 2.62 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.16 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.42 6.04 8.33 -92.71 -0.77 5.27 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.05 1.38 8.06 -2.39 -0.02 1.36 16 38 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.07 2.10 8.05 -2.39 -0.02 2.08 16 40 H 0.04 1.60 6.64 -2.39 -0.02 1.59 16 41 H 0.03 1.21 5.57 -2.39 -0.01 1.20 16 42 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 43 H 0.02 0.85 7.76 -2.39 -0.02 0.83 16 44 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 46 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 47 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 48 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -87.42 392.22 1.84 -85.58 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.09 Total: 12.05 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 6.55 Total: 4.03 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -6.42 Total: -130.10 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.05 Total: -20.02 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.66 Total: 48.46 kcal Total: -87.42 1.84 -85.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266513797.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.123 kcal (2) G-P(sol) polarization free energy of solvation -87.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds