Wall clock time and date at job start Wed Apr 1 2020 04:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35752 * 125.68021 * 2 1 4 4 C 1.35368 * 108.85497 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.07508 * 179.97438 * 4 3 2 6 6 N 1.46895 * 109.47426 * 89.99198 * 5 4 3 7 7 C 1.48222 * 111.00422 * 189.99756 * 6 5 4 8 8 C 1.52674 * 85.71407 * 136.72871 * 7 6 5 9 9 C 1.48218 * 111.00538 * 289.72728 * 6 5 4 10 10 C 1.52235 * 122.19603 * 104.25509 * 8 7 6 11 11 N 1.47309 * 87.60871 * 99.84724 * 10 8 7 12 12 C 1.34780 * 135.87025 * 205.98690 * 11 10 8 13 13 O 1.21280 * 120.00423 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99795 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46838 * 89.99826 * 20 18 16 22 22 H 1.48497 * 109.47419 * 209.99978 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00539 * 20 18 16 24 24 C 1.47315 * 88.25445 * 26.23769 * 11 10 8 25 25 C 1.39965 * 107.85191 * 0.23384 * 4 3 2 26 26 C 1.37576 * 125.68132 * 180.02562 * 2 1 3 27 27 C 1.43202 * 126.22153 * 359.97438 * 26 2 1 28 28 N 3.55845 * 90.07757 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46873 * 90.00797 * 1 2 3 30 30 H 1.09004 * 109.47339 * 210.00485 * 1 2 3 31 31 H 1.09000 * 109.47469 * 330.00630 * 1 2 3 32 32 H 1.08009 * 125.57601 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.47208 * 329.99430 * 5 4 3 34 34 H 1.08995 * 109.47295 * 209.99870 * 5 4 3 35 35 H 1.08999 * 113.83135 * 22.53466 * 7 6 5 36 36 H 1.08999 * 113.94809 * 250.94064 * 7 6 5 37 37 H 1.09003 * 113.83749 * 109.07090 * 9 6 5 38 38 H 1.09005 * 113.83308 * 337.46911 * 9 6 5 39 39 H 1.09004 * 113.52561 * 345.16109 * 10 8 7 40 40 H 1.08996 * 113.59115 * 214.54345 * 10 8 7 41 41 H 1.09002 * 109.47060 * 299.99722 * 14 12 11 42 42 H 1.09001 * 109.47380 * 59.99809 * 14 12 11 43 43 H 1.09002 * 109.47153 * 299.99998 * 15 14 12 44 44 H 1.08998 * 109.47533 * 59.99628 * 15 14 12 45 45 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 46 46 H 1.09003 * 113.52347 * 88.44812 * 24 11 10 47 47 H 1.08997 * 113.52869 * 219.07944 * 24 11 10 48 48 H 1.07994 * 126.44910 * 179.75645 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2568 1.1027 0.0000 4 6 3.5525 0.7109 -0.0006 5 6 4.7544 1.6199 -0.0013 6 7 5.1456 1.9157 1.3834 7 6 6.1667 2.9891 1.4292 8 6 5.3549 3.5540 2.5923 9 6 4.1503 2.7959 2.0401 10 6 5.8066 3.4156 4.0395 11 7 6.3047 4.7992 3.9517 12 6 7.2594 5.5245 4.5673 13 8 7.9457 5.0170 5.4289 14 6 7.4735 6.9666 4.1856 15 6 8.6071 7.5544 5.0285 16 6 8.8216 8.9962 4.6465 17 1 8.2102 9.4484 3.8795 18 6 9.7976 9.7386 5.2767 19 7 10.5418 9.1882 6.2111 20 14 10.0640 11.5257 4.8027 21 1 9.2065 12.3951 5.6479 22 1 11.4898 11.8855 5.0094 23 1 9.7072 11.7173 3.3740 24 6 5.3005 5.0463 2.9027 25 6 3.5776 -0.6885 -0.0064 26 6 2.2674 -1.1175 -0.0005 27 6 1.8226 -2.4787 -0.0006 28 7 1.4698 -3.5584 -0.0016 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.9097 2.1255 -0.0004 33 1 4.5072 2.5488 -0.5153 34 1 5.5808 1.1292 -0.5154 35 1 6.1741 3.6279 0.5461 36 1 7.1605 2.6426 1.7129 37 1 3.5564 2.2955 2.8050 38 1 3.5469 3.3762 1.3420 39 1 6.5959 2.6770 4.1802 40 1 4.9836 3.2932 4.7436 41 1 7.7362 7.0278 3.1295 42 1 6.5578 7.5299 4.3655 43 1 8.3440 7.4932 6.0845 44 1 9.5229 6.9913 4.8491 45 1 11.2282 9.7105 6.6548 46 1 4.3367 5.3750 3.2917 47 1 5.6654 5.6749 2.0904 48 1 4.4576 -1.3145 -0.0120 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271252503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:23 Heat of formation + Delta-G solvation = 123.327040 kcal Electronic energy + Delta-G solvation = -27965.707006 eV Core-core repulsion = 24024.549707 eV Total energy + Delta-G solvation = -3941.157299 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.95814 -41.20705 -38.71944 -36.95537 -36.67084 -33.97154 -33.43819 -31.30183 -30.87466 -29.49075 -27.97983 -26.59874 -26.36532 -26.08871 -25.00306 -23.11710 -22.53797 -21.20664 -20.31798 -18.84797 -18.55843 -18.17439 -16.89959 -16.43447 -16.31177 -15.96795 -15.95408 -15.80390 -15.23820 -14.82995 -14.72727 -14.49328 -14.35612 -13.96464 -13.88965 -13.81391 -13.36995 -13.30733 -13.15866 -12.87158 -12.72571 -12.62638 -12.43713 -12.16077 -12.14246 -11.99826 -11.66629 -11.30419 -11.14381 -10.92606 -10.89075 -10.65323 -10.58620 -9.94869 -9.65372 -9.28190 -9.15066 -9.03905 -8.95923 -8.64455 -8.43688 -8.30464 -5.95307 -3.99847 0.92752 1.74220 2.13174 2.55414 3.01332 3.07200 3.24506 3.33431 3.39560 3.41866 3.42120 3.65226 4.07061 4.10948 4.18447 4.43755 4.47166 4.48585 4.61562 4.63655 4.76822 4.79934 5.01626 5.06719 5.09502 5.15916 5.27059 5.33656 5.39514 5.41566 5.45516 5.46351 5.53085 5.72912 5.74658 5.80078 5.84879 6.04381 6.10946 6.24031 6.24543 6.33170 6.42525 6.55657 6.76231 6.91357 7.00717 7.75012 7.87077 8.05243 8.09173 8.39131 8.76721 9.08527 9.63549 11.15643 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.030400 B = 0.001584 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.831551 B =17667.882358 C =17944.915084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.425 5.425 3 C 0.039 3.961 4 C -0.160 4.160 5 C 0.092 3.908 6 N -0.470 5.470 7 C 0.034 3.966 8 C -0.131 4.131 9 C 0.027 3.973 10 C 0.133 3.867 11 N -0.655 5.655 12 C 0.539 3.461 13 O -0.531 6.531 14 C -0.121 4.121 15 C 0.036 3.964 16 C -0.527 4.527 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.115 3.885 25 C -0.088 4.088 26 C 0.041 3.959 27 C 0.282 3.718 28 N -0.414 5.414 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.172 0.828 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.023 0.977 44 H 0.024 0.976 45 H 0.261 0.739 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.754 -17.022 -17.440 33.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.100 5.100 3 C -0.097 4.097 4 C -0.166 4.166 5 C -0.036 4.036 6 N -0.192 5.192 7 C -0.095 4.095 8 C -0.133 4.133 9 C -0.102 4.102 10 C 0.010 3.990 11 N -0.394 5.394 12 C 0.331 3.669 13 O -0.406 6.406 14 C -0.161 4.161 15 C -0.002 4.002 16 C -0.565 4.565 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.009 4.009 25 C -0.117 4.117 26 C -0.071 4.071 27 C -0.033 4.033 28 N -0.091 5.091 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.189 0.811 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.071 0.929 46 H 0.102 0.898 47 H 0.098 0.902 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.829 -19.458 -16.460 34.216 hybrid contribution -0.126 2.180 -0.626 2.272 sum -22.955 -17.278 -17.086 33.428 Atomic orbital electron populations 1.22192 0.76260 1.05045 1.03977 1.43845 1.06419 1.04794 1.54896 1.21862 0.89935 0.91171 1.06720 1.19144 0.93208 0.93619 1.10664 1.20958 0.94716 0.96866 0.91075 1.68695 1.05737 1.30644 1.14172 1.23602 0.97818 0.91865 0.96184 1.23103 0.97781 0.95890 0.96488 1.23649 0.94490 0.93462 0.98590 1.22387 0.98174 0.85477 0.92993 1.49960 1.34614 1.13442 1.41366 1.21251 0.77337 0.88677 0.79605 1.90687 1.46185 1.72469 1.31258 1.21809 1.03056 0.88669 1.02522 1.18922 0.91738 0.94626 0.94866 1.21204 1.18084 0.96165 1.21068 0.92629 1.25025 0.95901 0.98353 0.95080 1.70003 1.21464 1.36408 1.24890 0.86589 0.77362 0.85204 0.78767 1.20691 1.21209 1.19904 1.22784 0.92451 0.95251 0.90409 1.21191 0.93708 0.94614 1.02217 1.15609 0.90079 0.80538 1.20836 1.24374 0.94083 0.91598 0.93206 1.81323 1.06003 1.11032 1.10736 0.90154 0.89849 0.88735 0.81098 0.93273 0.89545 0.90397 0.88665 0.89049 0.90747 0.90258 0.90048 0.90391 0.90443 0.95830 0.95758 0.92946 0.89755 0.90191 0.83202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.12 10.92 59.85 0.65 0.78 16 2 N -0.42 -2.01 3.17 -121.39 -0.38 -2.39 16 3 C 0.04 0.16 10.92 -16.84 -0.18 -0.02 16 4 C -0.16 -0.91 5.25 -105.00 -0.55 -1.46 16 5 C 0.09 0.51 5.31 -4.98 -0.03 0.49 16 6 N -0.47 -3.40 6.25 -246.91 -1.54 -4.94 16 7 C 0.03 0.26 7.82 -3.26 -0.03 0.24 16 8 C -0.13 -1.09 1.47 -155.74 -0.23 -1.32 16 9 C 0.03 0.16 6.99 -3.27 -0.02 0.14 16 10 C 0.13 1.54 8.43 -7.54 -0.06 1.48 16 11 N -0.66 -9.61 3.69 -184.97 -0.68 -10.29 16 12 C 0.54 10.84 8.08 -10.98 -0.09 10.75 16 13 O -0.53 -13.13 16.75 5.56 0.09 -13.04 16 14 C -0.12 -2.50 5.46 -27.88 -0.15 -2.65 16 15 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 16 C -0.53 -14.97 9.11 -34.44 -0.31 -15.28 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.47 13.29 55.43 0.74 -26.73 16 20 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 C 0.12 1.10 8.26 -7.39 -0.06 1.04 16 25 C -0.09 -0.58 10.79 -39.07 -0.42 -1.00 16 26 C 0.04 0.28 6.75 -83.50 -0.56 -0.29 16 27 C 0.28 2.36 15.21 -22.47 -0.34 2.02 16 28 N -0.41 -4.34 18.54 41.84 0.78 -3.56 16 29 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 30 H 0.08 0.19 7.79 -51.93 -0.40 -0.21 16 31 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.17 0.26 8.06 -52.48 -0.42 -0.16 16 33 H 0.05 0.22 7.71 -51.93 -0.40 -0.18 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.51 7.80 -51.93 -0.40 0.10 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.30 7.79 -51.93 -0.40 -0.11 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 42 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 44 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 412.03 15.07 6.21 6.21 Total: -1.00 -37.34 412.03 -9.92 -47.26 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -7.49 Total: -6.43 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -2.61 Total: -2.64 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -1.10 Total: -47.91 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.04 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -37.34 -9.92 -47.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271252503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.582 kcal (2) G-P(sol) polarization free energy of solvation -37.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds