Wall clock time and date at job start Wed Apr 1 2020 04:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35752 * 125.68021 * 2 1 4 4 C 1.35368 * 108.85497 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.07508 * 179.97438 * 4 3 2 6 6 N 1.46895 * 109.47426 * 89.99198 * 5 4 3 7 7 C 1.48222 * 111.00422 * 189.99756 * 6 5 4 8 8 C 1.52674 * 85.71407 * 136.72871 * 7 6 5 9 9 C 1.48218 * 111.00538 * 289.72728 * 6 5 4 10 10 C 1.52235 * 122.19603 * 104.25509 * 8 7 6 11 11 N 1.47309 * 87.60871 * 99.84724 * 10 8 7 12 12 C 1.34780 * 135.87025 * 205.98690 * 11 10 8 13 13 O 1.21280 * 120.00423 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99795 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46838 * 89.99826 * 20 18 16 22 22 H 1.48497 * 109.47419 * 209.99978 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00539 * 20 18 16 24 24 C 1.47315 * 88.25445 * 26.23769 * 11 10 8 25 25 C 1.39965 * 107.85191 * 0.23384 * 4 3 2 26 26 C 1.37576 * 125.68132 * 180.02562 * 2 1 3 27 27 C 1.43202 * 126.22153 * 359.97438 * 26 2 1 28 28 N 3.55845 * 90.07757 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46873 * 90.00797 * 1 2 3 30 30 H 1.09004 * 109.47339 * 210.00485 * 1 2 3 31 31 H 1.09000 * 109.47469 * 330.00630 * 1 2 3 32 32 H 1.08009 * 125.57601 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.47208 * 329.99430 * 5 4 3 34 34 H 1.08995 * 109.47295 * 209.99870 * 5 4 3 35 35 H 1.08999 * 113.83135 * 22.53466 * 7 6 5 36 36 H 1.08999 * 113.94809 * 250.94064 * 7 6 5 37 37 H 1.09003 * 113.83749 * 109.07090 * 9 6 5 38 38 H 1.09005 * 113.83308 * 337.46911 * 9 6 5 39 39 H 1.09004 * 113.52561 * 345.16109 * 10 8 7 40 40 H 1.08996 * 113.59115 * 214.54345 * 10 8 7 41 41 H 1.09002 * 109.47060 * 299.99722 * 14 12 11 42 42 H 1.09001 * 109.47380 * 59.99809 * 14 12 11 43 43 H 1.09002 * 109.47153 * 299.99998 * 15 14 12 44 44 H 1.08998 * 109.47533 * 59.99628 * 15 14 12 45 45 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 46 46 H 1.09003 * 113.52347 * 88.44812 * 24 11 10 47 47 H 1.08997 * 113.52869 * 219.07944 * 24 11 10 48 48 H 1.07994 * 126.44910 * 179.75645 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2568 1.1027 0.0000 4 6 3.5525 0.7109 -0.0006 5 6 4.7544 1.6199 -0.0013 6 7 5.1456 1.9157 1.3834 7 6 6.1667 2.9891 1.4292 8 6 5.3549 3.5540 2.5923 9 6 4.1503 2.7959 2.0401 10 6 5.8066 3.4156 4.0395 11 7 6.3047 4.7992 3.9517 12 6 7.2594 5.5245 4.5673 13 8 7.9457 5.0170 5.4289 14 6 7.4735 6.9666 4.1856 15 6 8.6071 7.5544 5.0285 16 6 8.8216 8.9962 4.6465 17 1 8.2102 9.4484 3.8795 18 6 9.7976 9.7386 5.2767 19 7 10.5418 9.1882 6.2111 20 14 10.0640 11.5257 4.8027 21 1 9.2065 12.3951 5.6479 22 1 11.4898 11.8855 5.0094 23 1 9.7072 11.7173 3.3740 24 6 5.3005 5.0463 2.9027 25 6 3.5776 -0.6885 -0.0064 26 6 2.2674 -1.1175 -0.0005 27 6 1.8226 -2.4787 -0.0006 28 7 1.4698 -3.5584 -0.0016 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.9097 2.1255 -0.0004 33 1 4.5072 2.5488 -0.5153 34 1 5.5808 1.1292 -0.5154 35 1 6.1741 3.6279 0.5461 36 1 7.1605 2.6426 1.7129 37 1 3.5564 2.2955 2.8050 38 1 3.5469 3.3762 1.3420 39 1 6.5959 2.6770 4.1802 40 1 4.9836 3.2932 4.7436 41 1 7.7362 7.0278 3.1295 42 1 6.5578 7.5299 4.3655 43 1 8.3440 7.4932 6.0845 44 1 9.5229 6.9913 4.8491 45 1 11.2282 9.7105 6.6548 46 1 4.3367 5.3750 3.2917 47 1 5.6654 5.6749 2.0904 48 1 4.4576 -1.3145 -0.0120 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271252503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:22 Heat of formation + Delta-G solvation = 97.045851 kcal Electronic energy + Delta-G solvation = -27966.846644 eV Core-core repulsion = 24024.549707 eV Total energy + Delta-G solvation = -3942.296937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.40915 -41.93159 -40.00707 -37.83904 -37.50534 -35.55252 -34.34806 -33.05802 -31.65427 -30.25528 -28.81478 -27.59049 -27.02470 -26.81694 -26.33016 -23.83288 -23.27741 -22.72770 -20.71963 -20.07897 -19.23422 -18.73364 -18.66580 -17.53827 -17.15652 -16.80251 -16.70183 -16.49860 -16.39690 -16.01932 -15.84664 -15.69114 -15.20188 -14.69225 -14.50494 -14.47854 -14.26849 -14.03760 -13.93394 -13.85159 -13.68468 -13.50949 -13.26221 -13.12999 -13.04458 -13.02086 -12.79717 -12.60282 -12.45385 -12.18751 -11.93792 -11.91361 -11.63886 -11.56404 -11.42082 -11.28465 -10.61802 -10.55666 -9.75823 -9.53874 -9.43388 -9.04579 -8.16355 -6.31041 0.45944 1.25865 1.43745 1.46984 1.57897 1.70502 1.74322 1.93627 2.10382 2.44155 2.44861 2.94117 3.06203 3.16583 3.44150 3.48856 3.77681 3.90438 4.05685 4.14848 4.28877 4.42839 4.43651 4.47874 4.49412 4.53431 4.57984 4.62238 4.67141 4.69930 4.72298 4.78137 4.84147 4.86548 4.93405 4.94596 5.05434 5.12444 5.19403 5.22427 5.39028 5.50551 5.59130 5.62607 5.81908 5.85647 6.01895 6.18046 6.25049 6.31428 6.44174 6.77388 6.88938 7.27504 7.39565 8.96476 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.030400 B = 0.001584 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.831551 B =17667.882358 C =17944.915084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.422 5.422 3 C 0.062 3.938 4 C -0.177 4.177 5 C 0.096 3.904 6 N -0.491 5.491 7 C 0.032 3.968 8 C -0.117 4.117 9 C 0.044 3.956 10 C 0.122 3.878 11 N -0.657 5.657 12 C 0.534 3.466 13 O -0.599 6.599 14 C -0.106 4.106 15 C 0.041 3.959 16 C -0.542 4.542 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.939 5.939 20 Si 0.976 3.024 21 H -0.271 1.271 22 H -0.287 1.287 23 H -0.253 1.253 24 C 0.116 3.884 25 C -0.097 4.097 26 C 0.015 3.985 27 C 0.303 3.697 28 N -0.464 5.464 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.209 0.791 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.102 0.898 43 H -0.020 1.020 44 H -0.020 1.020 45 H 0.262 0.738 46 H 0.114 0.886 47 H 0.096 0.904 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.007 -14.452 -20.292 36.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.096 5.096 3 C -0.075 4.075 4 C -0.183 4.183 5 C -0.032 4.032 6 N -0.213 5.213 7 C -0.097 4.097 8 C -0.118 4.118 9 C -0.085 4.085 10 C -0.001 4.001 11 N -0.392 5.392 12 C 0.326 3.674 13 O -0.479 6.479 14 C -0.146 4.146 15 C 0.004 3.996 16 C -0.580 4.580 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.579 5.579 20 Si 0.800 3.200 21 H -0.197 1.197 22 H -0.213 1.213 23 H -0.177 1.177 24 C -0.006 4.006 25 C -0.127 4.127 26 C -0.097 4.097 27 C -0.011 4.011 28 N -0.142 5.142 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.226 0.774 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.128 0.872 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.120 0.880 43 H -0.002 1.002 44 H -0.001 1.001 45 H 0.071 0.929 46 H 0.132 0.868 47 H 0.114 0.886 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -26.174 -16.925 -19.381 36.704 hybrid contribution 0.848 1.311 0.239 1.579 sum -25.327 -15.614 -19.142 35.379 Atomic orbital electron populations 1.22438 0.74543 1.06003 1.05024 1.44080 1.07485 1.04192 1.53871 1.22422 0.89176 0.92292 1.03629 1.19213 0.94149 0.92948 1.11969 1.20935 0.94426 0.97687 0.90115 1.68683 1.06134 1.30870 1.15648 1.23615 0.96842 0.92443 0.96752 1.22938 0.99650 0.95147 0.94082 1.23715 0.93432 0.92598 0.98765 1.22692 0.97836 0.83118 0.96405 1.49914 1.33723 1.14614 1.40955 1.21003 0.78282 0.88765 0.79366 1.90652 1.49224 1.73618 1.34449 1.21522 1.01376 0.89452 1.02244 1.18706 0.92426 0.94832 0.93669 1.21695 1.18330 0.96589 1.21377 0.90393 1.26172 0.95457 1.04106 0.94771 1.70196 1.22370 1.38791 1.26515 0.85287 0.77135 0.78127 0.79472 1.19668 1.21289 1.17674 1.23206 0.91979 0.96366 0.89062 1.21349 0.93642 0.95629 1.02041 1.15579 0.90659 0.80352 1.23100 1.24639 0.92807 0.91801 0.91864 1.81325 1.07595 1.12354 1.12895 0.89069 0.90775 0.85960 0.77395 0.91013 0.90389 0.88244 0.91331 0.88806 0.87211 0.92690 0.88332 0.88045 0.88031 1.00166 1.00139 0.92890 0.86786 0.88597 0.83719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.04 10.92 127.77 1.40 1.44 16 2 N -0.42 -2.73 3.17 -537.98 -1.70 -4.43 16 3 C 0.06 0.24 10.92 83.42 0.91 1.15 16 4 C -0.18 -1.46 5.25 -20.11 -0.11 -1.56 16 5 C 0.10 0.75 5.31 85.56 0.45 1.20 16 6 N -0.49 -5.66 6.25 -935.07 -5.84 -11.50 16 7 C 0.03 0.42 7.82 85.94 0.67 1.10 16 8 C -0.12 -1.57 1.47 -52.72 -0.08 -1.64 16 9 C 0.04 0.31 6.99 85.94 0.60 0.91 16 10 C 0.12 2.71 8.43 83.68 0.71 3.41 16 11 N -0.66 -18.53 3.69 -857.49 -3.17 -21.70 16 12 C 0.53 21.96 8.08 87.66 0.71 22.67 16 13 O -0.60 -31.63 16.75 -3.03 -0.05 -31.68 16 14 C -0.11 -4.39 5.46 29.85 0.16 -4.22 16 15 C 0.04 2.35 4.26 29.85 0.13 2.48 16 16 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 17 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 18 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 19 N -0.94 -60.06 13.29 21.45 0.28 -59.78 16 20 Si 0.98 44.03 29.54 68.60 2.03 46.06 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.25 -10.48 7.11 99.48 0.71 -9.78 16 24 C 0.12 1.73 8.26 83.77 0.69 2.42 16 25 C -0.10 -1.17 10.79 22.60 0.24 -0.93 16 26 C 0.02 0.19 6.75 39.40 0.27 0.45 16 27 C 0.30 5.13 15.21 88.33 1.34 6.47 16 28 N -0.46 -10.12 18.54 19.00 0.35 -9.77 16 29 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.07 0.22 7.79 -2.39 -0.02 0.20 16 31 H 0.12 -0.58 8.14 -2.39 -0.02 -0.60 16 32 H 0.21 -0.81 8.06 -2.91 -0.02 -0.84 16 33 H 0.07 0.25 7.71 -2.39 -0.02 0.23 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.10 0.91 7.80 -2.39 -0.02 0.89 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.11 0.08 7.79 -2.38 -0.02 0.06 16 39 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 42 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 43 H -0.02 -1.30 8.10 -2.39 -0.02 -1.32 16 44 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 45 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 46 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -89.37 412.03 1.65 -87.72 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: 0.95 Total: 0.44 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 8.79 Total: 4.63 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -10.07 Total: -107.17 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -0.05 Total: -31.68 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -89.37 1.65 -87.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271252503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.766 kcal (2) G-P(sol) polarization free energy of solvation -89.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds