Wall clock time and date at job start Wed Apr 1 2020 02:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47097 * 2 1 4 4 C 1.42904 * 113.99993 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47291 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47236 * 55.00037 * 5 4 3 7 7 O 1.42903 * 109.47367 * 295.00341 * 5 4 3 8 8 C 1.53002 * 109.47256 * 175.00169 * 5 4 3 9 9 N 1.46896 * 109.46849 * 184.99868 * 8 5 4 10 10 C 1.48066 * 110.99794 * 190.00042 * 9 8 5 11 11 C 1.53388 * 86.02883 * 222.76840 * 10 9 8 12 12 C 1.48064 * 110.99861 * 90.55427 * 9 8 5 13 13 C 1.52558 * 113.84204 * 138.14067 * 11 10 9 14 14 N 1.46267 * 109.56569 * 176.52252 * 13 11 10 15 15 C 1.46506 * 118.71236 * 163.90057 * 14 13 11 16 16 C 1.53000 * 109.46992 * 90.00143 * 15 14 13 17 17 C 1.50696 * 109.47110 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00016 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99838 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00069 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00113 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47254 * 59.99074 * 21 19 17 23 23 H 1.48495 * 109.47558 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46814 * 299.99935 * 21 19 17 25 25 C 1.33713 * 122.57214 * 344.18486 * 14 13 11 26 26 O 1.21286 * 118.38533 * 182.95647 * 25 14 13 27 27 C 1.50145 * 123.25143 * 2.72120 * 25 14 13 28 28 O 1.42681 * 113.79317 * 268.80527 * 11 10 9 29 29 H 1.09005 * 109.47505 * 59.99581 * 1 2 3 30 30 H 1.08999 * 109.47519 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47232 * 299.99706 * 1 2 3 32 32 H 1.09007 * 109.46867 * 240.00578 * 2 1 3 33 33 H 1.08996 * 109.47405 * 120.00620 * 2 1 3 34 34 H 1.09005 * 109.46690 * 60.00587 * 4 3 2 35 35 H 1.08998 * 109.47366 * 300.00693 * 4 3 2 36 36 H 0.96697 * 113.99948 * 299.99841 * 7 5 4 37 37 H 1.09000 * 109.46575 * 65.00325 * 8 5 4 38 38 H 1.08998 * 109.47027 * 305.00114 * 8 5 4 39 39 H 1.08999 * 113.78278 * 108.49091 * 10 9 8 40 40 H 1.09004 * 113.78202 * 337.04472 * 10 9 8 41 41 H 1.08998 * 113.78441 * 22.95113 * 12 9 8 42 42 H 1.09001 * 113.78398 * 251.50398 * 12 9 8 43 43 H 1.09003 * 109.45054 * 56.49046 * 13 11 10 44 44 H 1.09000 * 109.44067 * 296.54336 * 13 11 10 45 45 H 1.09000 * 109.46803 * 209.99577 * 15 14 13 46 46 H 1.09000 * 109.47214 * 330.00370 * 15 14 13 47 47 H 1.09000 * 109.47214 * 300.00285 * 16 15 14 48 48 H 1.09008 * 109.47142 * 59.99450 * 16 15 14 49 49 H 0.97000 * 119.99667 * 180.02562 * 20 19 17 50 50 H 1.09000 * 109.48336 * 222.46321 * 27 25 14 51 51 H 1.08998 * 109.04635 * 102.86453 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 1 3.3493 3.4411 0.8429 7 8 3.3985 3.5458 -1.2198 8 6 5.3453 3.0605 0.1275 9 7 5.7142 4.4772 0.2484 10 6 7.1795 4.6557 0.1328 11 6 7.0447 5.6389 1.3024 12 6 5.7533 4.8960 1.6680 13 6 8.1476 5.5080 2.3483 14 7 7.9761 6.5381 3.3725 15 6 8.6870 6.3905 4.6450 16 6 10.0564 7.0654 4.5454 17 6 10.7874 6.9143 5.8546 18 1 10.3219 6.3890 6.6754 19 6 12.0504 7.4466 6.0044 20 7 12.6174 8.0858 5.0047 21 14 12.9568 7.2586 7.6269 22 1 13.1372 5.8159 7.9289 23 1 14.2859 7.9137 7.5303 24 1 12.1677 7.8962 8.7114 25 6 7.1917 7.6063 3.1949 26 8 7.1472 8.4414 4.0733 27 6 6.3670 7.8258 1.9596 28 8 6.8352 6.9907 0.8968 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8339 0.9765 -0.8893 35 1 3.8333 0.9766 0.8907 36 1 3.7836 3.1481 -2.0126 37 1 5.8186 2.6361 -0.7579 38 1 5.6808 2.5207 1.0130 39 1 7.4931 5.1232 -0.8005 40 1 7.7518 3.7602 0.3751 41 1 5.9026 4.0719 2.3655 42 1 4.9334 5.5547 1.9548 43 1 9.1188 5.6306 1.8689 44 1 8.0932 4.5228 2.8115 45 1 8.1081 6.8591 5.4409 46 1 8.8191 5.3315 4.8668 47 1 10.6353 6.5970 3.7494 48 1 9.9243 8.1245 4.3236 49 1 13.5061 8.4600 5.1100 50 1 6.4376 8.8703 1.6561 51 1 5.3272 7.5828 2.1783 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274564051.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:04 Heat of formation + Delta-G solvation = -160.181482 kcal Electronic energy + Delta-G solvation = -30576.660917 eV Core-core repulsion = 26283.608095 eV Total energy + Delta-G solvation = -4293.052822 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 30.70 seconds Orbital eigenvalues (eV) -42.40932 -40.63880 -39.43252 -38.04080 -37.16475 -36.99449 -35.13155 -32.92845 -32.27913 -31.77896 -30.04195 -28.83462 -27.46625 -27.12929 -26.34258 -24.28896 -23.68764 -23.32197 -22.31797 -21.31146 -19.69575 -18.77255 -18.58623 -18.13834 -17.58371 -17.45450 -17.15131 -16.99653 -16.94450 -16.57667 -16.29263 -15.85227 -15.76070 -15.68261 -15.13727 -14.84720 -14.60048 -14.50492 -14.27447 -14.16887 -14.04652 -13.74912 -13.62373 -13.37463 -13.27806 -13.12095 -12.83321 -12.64250 -12.60091 -12.37164 -12.27839 -12.24399 -12.01013 -11.91854 -11.74477 -11.66809 -11.49606 -11.20878 -10.88068 -10.59497 -10.56956 -10.42477 -9.81438 -9.61931 -8.23380 -6.36418 1.38293 1.42914 1.44245 1.50734 1.84166 2.37205 2.40528 2.46491 2.94878 3.09958 3.20088 3.31070 3.58960 3.59702 3.82696 3.97063 4.09447 4.10004 4.14144 4.16430 4.22189 4.28425 4.31687 4.36378 4.37625 4.42481 4.49523 4.51330 4.55898 4.57360 4.66462 4.67289 4.76626 4.80239 4.86208 4.90893 4.96547 5.03086 5.15348 5.25944 5.34909 5.42454 5.55240 5.76685 5.82122 5.97157 6.14812 6.28046 6.40867 6.78693 6.96914 7.03874 7.33239 8.88544 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017843 B = 0.001981 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.858400 B =14130.846166 C =14737.754974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.410 6.410 4 C 0.031 3.969 5 C 0.123 3.877 6 H 0.080 0.920 7 O -0.565 6.565 8 C -0.008 4.008 9 N -0.472 5.472 10 C 0.037 3.963 11 C 0.063 3.937 12 C -0.015 4.015 13 C 0.095 3.905 14 N -0.598 5.598 15 C 0.129 3.871 16 C 0.026 3.974 17 C -0.545 4.545 18 H 0.067 0.933 19 C 0.000 4.000 20 N -0.933 5.933 21 Si 0.971 3.029 22 H -0.258 1.258 23 H -0.284 1.284 24 H -0.271 1.271 25 C 0.471 3.529 26 O -0.592 6.592 27 C 0.064 3.936 28 O -0.346 6.346 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.383 0.617 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.116 0.884 45 H 0.056 0.944 46 H 0.095 0.905 47 H -0.001 1.001 48 H -0.029 1.029 49 H 0.264 0.736 50 H 0.137 0.863 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.202 -21.069 -14.686 32.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.330 6.330 4 C -0.046 4.046 5 C 0.063 3.937 6 H 0.098 0.902 7 O -0.371 6.371 8 C -0.137 4.137 9 N -0.194 5.194 10 C -0.092 4.092 11 C 0.022 3.978 12 C -0.144 4.144 13 C -0.028 4.028 14 N -0.329 5.329 15 C 0.007 3.993 16 C -0.012 4.012 17 C -0.583 4.583 18 H 0.085 0.915 19 C -0.198 4.198 20 N -0.572 5.572 21 Si 0.795 3.205 22 H -0.182 1.182 23 H -0.209 1.209 24 H -0.196 1.196 25 C 0.260 3.740 26 O -0.474 6.474 27 C -0.015 4.015 28 O -0.264 6.264 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.231 0.769 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.122 0.878 40 H 0.136 0.864 41 H 0.121 0.879 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.134 0.866 45 H 0.074 0.926 46 H 0.113 0.887 47 H 0.017 0.983 48 H -0.010 1.010 49 H 0.072 0.928 50 H 0.154 0.846 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.962 -19.675 -14.573 31.590 hybrid contribution 1.703 -0.481 1.267 2.177 sum -18.258 -20.156 -13.306 30.277 Atomic orbital electron populations 1.21774 0.93485 1.03248 1.02448 1.22648 0.96059 0.82958 1.00934 1.87940 1.21630 1.27829 1.95594 1.23297 0.81597 0.97402 1.02287 1.21694 0.93062 0.90925 0.88056 0.90170 1.86644 1.72487 1.62046 1.15930 1.23357 0.95861 0.90251 1.04198 1.68577 1.14636 1.19023 1.17167 1.24060 0.90291 0.96844 0.97958 1.23134 0.94500 0.83992 0.96220 1.24692 0.97301 1.00283 0.92145 1.22309 0.99641 0.92510 0.88296 1.47727 1.44673 1.23102 1.17402 1.21533 0.92487 1.01133 0.84164 1.19156 0.92131 0.93738 0.96224 1.21519 1.01317 1.36181 0.99307 0.91484 1.26034 0.98614 0.94436 1.00758 1.70119 1.15916 1.37535 1.33668 0.85417 0.77207 0.79149 0.78751 1.18248 1.20891 1.19632 1.21583 0.80897 0.81149 0.90396 1.90731 1.67520 1.43549 1.45616 1.22724 0.97608 0.98060 0.83084 1.88106 1.86563 1.18590 1.33128 0.92570 0.89148 0.92695 0.92321 0.92524 0.91146 0.91184 0.76872 0.87992 0.90663 0.87789 0.86368 0.87877 0.89690 0.91095 0.86607 0.92562 0.88723 0.98301 1.01024 0.92751 0.84559 0.87194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.81 16 2 C 0.05 0.55 6.66 71.98 0.48 1.03 16 3 O -0.41 -6.90 10.31 -144.34 -1.49 -8.39 16 4 C 0.03 0.34 5.57 71.98 0.40 0.74 16 5 C 0.12 1.71 3.47 30.59 0.11 1.81 16 6 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 7 O -0.56 -10.18 13.25 -144.34 -1.91 -12.09 16 8 C -0.01 -0.08 4.43 86.30 0.38 0.30 16 9 N -0.47 -7.49 6.11 -920.32 -5.62 -13.12 16 10 C 0.04 0.53 7.36 86.20 0.63 1.17 16 11 C 0.06 1.31 1.16 -10.65 -0.01 1.30 16 12 C -0.02 -0.27 7.07 86.21 0.61 0.34 16 13 C 0.10 2.38 5.88 86.28 0.51 2.89 16 14 N -0.60 -21.34 2.83 -825.54 -2.34 -23.68 16 15 C 0.13 5.48 5.21 86.38 0.45 5.93 16 16 C 0.03 1.40 5.29 29.85 0.16 1.56 16 17 C -0.54 -31.51 9.11 25.60 0.23 -31.27 16 18 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 19 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 20 N -0.93 -58.14 13.29 21.45 0.28 -57.86 16 21 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 22 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 C 0.47 17.84 7.57 87.65 0.66 18.51 16 26 O -0.59 -28.43 16.33 -3.05 -0.05 -28.48 16 27 C 0.06 1.79 6.65 71.06 0.47 2.26 16 28 O -0.35 -9.29 10.66 -148.98 -1.59 -10.88 16 29 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.07 0.55 8.14 -2.39 -0.02 0.54 16 36 H 0.38 3.90 9.05 -74.06 -0.67 3.23 16 37 H 0.10 0.63 8.08 -2.39 -0.02 0.61 16 38 H 0.08 0.50 7.38 -2.39 -0.02 0.49 16 39 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.12 1.00 7.88 -2.38 -0.02 0.98 16 41 H 0.10 1.33 7.25 -2.39 -0.02 1.31 16 42 H 0.08 1.67 7.01 -2.39 -0.02 1.65 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.12 2.13 7.77 -2.39 -0.02 2.11 16 45 H 0.06 2.61 7.28 -2.39 -0.02 2.59 16 46 H 0.09 3.41 7.96 -2.39 -0.02 3.39 16 47 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 48 H -0.03 -1.85 8.14 -2.38 -0.02 -1.87 16 49 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 50 H 0.14 3.60 8.14 -2.39 -0.02 3.58 16 51 H 0.11 2.53 7.15 -2.39 -0.02 2.52 16 Total: -1.00 -83.84 413.51 -4.16 -87.99 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.24 Total: 13.62 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 6.29 Total: 6.21 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -7.68 Total: -94.65 kcal Atomic # 8 Polarization: -54.80 SS G_CDS: -5.04 Total: -59.84 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -83.84 -4.16 -87.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274564051.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.188 kcal (2) G-P(sol) polarization free energy of solvation -83.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 30.70 seconds