Wall clock time and date at job start Wed Apr 1 2020 04:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35034 * 124.88692 * 2 1 4 4 C 1.35371 * 107.22924 * 180.02562 * 3 2 1 5 5 C 1.41496 * 105.50187 * 0.02562 * 4 3 2 6 6 C 1.47705 * 126.51803 * 179.97438 * 5 4 3 7 7 O 1.21576 * 120.00207 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00345 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00304 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.46915 * 325.00412 * 9 8 6 11 11 C 1.53002 * 109.47363 * 204.99969 * 9 8 6 12 12 C 1.53001 * 109.47170 * 64.99838 * 11 9 8 13 13 C 1.52994 * 109.47344 * 180.02562 * 12 11 9 14 14 N 1.46495 * 109.47431 * 180.02562 * 13 12 11 15 15 C 1.36938 * 120.00431 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99676 * 359.97438 * 15 14 13 17 17 C 1.38807 * 120.00243 * 180.02562 * 15 14 13 18 18 N 1.31624 * 120.00076 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99960 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47495 * 59.99344 * 19 17 15 21 21 H 1.48504 * 109.47264 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47049 * 299.99500 * 19 17 15 23 23 C 1.50702 * 109.46980 * 84.99924 * 9 8 6 24 24 C 1.38238 * 119.99760 * 39.72932 * 23 9 8 25 25 C 1.38245 * 119.99689 * 179.80874 * 24 23 9 26 26 C 1.38238 * 119.99869 * 0.39864 * 25 24 23 27 27 C 1.38234 * 120.00077 * 359.85543 * 26 25 24 28 28 C 1.38234 * 119.99992 * 220.00123 * 23 9 8 29 29 N 1.28468 * 124.88202 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.46809 * 270.02488 * 1 2 3 31 31 H 1.09002 * 109.46891 * 30.01658 * 1 2 3 32 32 H 1.08999 * 109.46998 * 150.01836 * 1 2 3 33 33 H 1.07998 * 126.38355 * 359.97289 * 3 2 1 34 34 H 1.07998 * 127.24848 * 180.02562 * 4 3 2 35 35 H 0.96998 * 120.00006 * 359.97438 * 8 6 5 36 36 H 1.08994 * 109.47175 * 185.00595 * 11 9 8 37 37 H 1.09002 * 109.46503 * 304.99961 * 11 9 8 38 38 H 1.09001 * 109.47112 * 300.00724 * 12 11 9 39 39 H 1.09007 * 109.46662 * 59.99995 * 12 11 9 40 40 H 1.09007 * 109.46869 * 300.00615 * 13 12 11 41 41 H 1.09003 * 109.46960 * 59.99651 * 13 12 11 42 42 H 0.97002 * 119.99710 * 359.97438 * 14 13 12 43 43 H 0.97000 * 119.99938 * 180.02562 * 18 17 15 44 44 H 1.07997 * 120.00198 * 359.97438 * 24 23 9 45 45 H 1.07999 * 119.99853 * 180.22885 * 25 24 23 46 46 H 1.08000 * 119.99671 * 179.83358 * 26 25 24 47 47 H 1.07999 * 120.00003 * 179.97438 * 27 26 25 48 48 H 1.07996 * 120.00423 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2374 1.1077 0.0000 4 6 3.5273 0.6970 -0.0006 5 6 3.4741 -0.7169 -0.0015 6 6 4.6272 -1.6399 -0.0030 7 8 5.7597 -1.1978 -0.0039 8 7 4.4240 -2.9723 -0.0043 9 6 5.5678 -3.8877 -0.0063 10 1 6.3769 -3.4569 -0.5958 11 6 5.1486 -5.2265 -0.6170 12 6 4.7891 -5.0246 -2.0904 13 6 4.3693 -6.3631 -2.7010 14 7 4.0258 -6.1699 -4.1120 15 6 3.6188 -7.2355 -4.8698 16 1 3.5516 -8.2184 -4.4273 17 6 3.2938 -7.0525 -6.2068 18 7 3.3763 -5.8547 -6.7462 19 14 2.7381 -8.5059 -7.2402 20 1 1.5086 -9.0924 -6.6491 21 1 2.4522 -8.0490 -8.6240 22 1 3.8113 -9.5319 -7.2691 23 6 6.0385 -4.1065 1.4085 24 6 5.1174 -4.2390 2.4307 25 6 5.5491 -4.4437 3.7280 26 6 6.9022 -4.5075 4.0042 27 6 7.8233 -4.3697 2.9827 28 6 7.3915 -4.1690 1.6849 29 7 2.1997 -1.0539 -0.0005 30 1 -0.3633 0.0004 1.0276 31 1 -0.3633 0.8899 -0.5141 32 1 -0.3633 -0.8901 -0.5135 33 1 1.8906 2.1304 -0.0004 34 1 4.4109 1.3179 -0.0004 35 1 3.5205 -3.3251 -0.0039 36 1 5.9723 -5.9358 -0.5378 37 1 4.2821 -5.6146 -0.0815 38 1 3.9654 -4.3151 -2.1696 39 1 5.6557 -4.6364 -2.6258 40 1 5.1929 -7.0728 -2.6218 41 1 3.5028 -6.7509 -2.1654 42 1 4.0865 -5.2872 -4.5094 43 1 3.1488 -5.7268 -7.6804 44 1 4.0604 -4.1854 2.2155 45 1 4.8294 -4.5509 4.5260 46 1 7.2395 -4.6647 5.0180 47 1 8.8804 -4.4192 3.1986 48 1 8.1113 -4.0615 0.8870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277546921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:40 Heat of formation + Delta-G solvation = 75.596534 kcal Electronic energy + Delta-G solvation = -28823.859409 eV Core-core repulsion = 24880.632360 eV Total energy + Delta-G solvation = -3943.227049 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.78663 -40.10721 -38.69963 -36.39628 -34.73422 -33.70867 -32.52433 -31.57357 -30.94398 -30.73932 -30.05185 -27.92065 -26.73570 -24.27582 -23.24257 -22.63595 -22.27770 -21.65589 -20.77238 -20.55039 -20.02223 -18.05243 -17.13340 -16.87701 -16.68070 -16.47361 -16.07542 -15.44807 -14.71954 -14.68753 -14.52079 -14.42053 -14.18278 -13.96738 -13.58898 -13.43424 -13.37946 -13.17417 -13.08427 -12.88915 -12.84953 -12.81861 -12.14042 -11.76594 -11.59111 -11.14353 -11.09206 -11.04446 -10.81552 -10.76007 -10.51085 -10.38959 -10.09255 -10.02193 -9.66051 -9.46012 -9.26838 -9.08184 -8.93972 -8.81842 -8.72837 -6.86623 -5.71562 -3.00097 1.28745 1.37121 1.48109 1.98041 2.24326 3.16694 3.42834 3.46771 3.50594 3.52088 3.76125 4.13394 4.56295 4.58054 4.67106 4.70660 4.71967 4.82673 4.91899 5.00768 5.04016 5.06872 5.15785 5.23698 5.42641 5.46623 5.48630 5.55661 5.60119 5.61207 5.74478 5.92348 5.93798 6.00252 6.16088 6.20683 6.24188 6.36346 6.38367 6.43293 6.45433 6.47402 6.52194 6.67229 6.92820 6.95355 6.96183 7.44304 7.73439 7.76771 8.23908 8.47580 9.58118 10.17848 10.52267 11.51417 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.007105 B = 0.003048 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3939.829341 B = 9183.433952 C =12183.934437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.285 5.285 3 C -0.021 4.021 4 C -0.179 4.179 5 C -0.016 4.016 6 C 0.608 3.392 7 O -0.531 6.531 8 N -0.706 5.706 9 C 0.185 3.815 10 H 0.100 0.900 11 C -0.116 4.116 12 C -0.125 4.125 13 C 0.154 3.846 14 N -0.734 5.734 15 C -0.239 4.239 16 H 0.069 0.931 17 C -0.016 4.016 18 N -0.935 5.935 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.087 4.087 24 C -0.105 4.105 25 C -0.123 4.123 26 C -0.125 4.125 27 C -0.121 4.121 28 C -0.103 4.103 29 N -0.258 5.258 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.182 0.818 34 H 0.162 0.838 35 H 0.407 0.593 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.018 0.982 41 H 0.017 0.983 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.522 13.242 22.996 26.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.073 5.073 3 C -0.164 4.164 4 C -0.207 4.207 5 C -0.176 4.176 6 C 0.393 3.607 7 O -0.405 6.405 8 N -0.358 5.358 9 C 0.081 3.919 10 H 0.118 0.882 11 C -0.155 4.155 12 C -0.163 4.163 13 C 0.026 3.974 14 N -0.378 5.378 15 C -0.370 4.370 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.089 4.089 24 C -0.123 4.123 25 C -0.141 4.141 26 C -0.143 4.143 27 C -0.139 4.139 28 C -0.122 4.122 29 N -0.095 5.095 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.199 0.801 34 H 0.179 0.821 35 H 0.243 0.757 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.138 0.862 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.603 12.467 22.917 26.138 hybrid contribution -0.395 0.148 -0.730 0.843 sum -1.998 12.615 22.187 25.601 Atomic orbital electron populations 1.22199 0.73115 1.05757 1.04384 1.45407 1.07864 1.03122 1.50895 1.22858 0.90993 0.93752 1.08771 1.21785 0.97336 0.93571 1.07994 1.21939 0.90710 0.94233 1.10706 1.16851 0.86557 0.81465 0.75842 1.90789 1.22539 1.77104 1.50081 1.45864 1.10311 1.05126 1.74455 1.19979 0.89301 0.90407 0.92210 0.88203 1.21822 1.02414 0.94690 0.96537 1.21741 1.01684 0.99339 0.93576 1.20631 0.96537 0.93737 0.86474 1.42372 1.80800 1.09333 1.05313 1.19207 1.36698 0.89274 0.91830 0.91272 1.24746 1.02676 0.96663 0.97047 1.69661 1.55258 1.20449 1.12968 0.86261 0.78518 0.81812 0.79567 1.21313 1.21706 1.21265 1.20243 0.93685 0.99324 0.95601 1.20929 0.99385 0.99424 0.92542 1.21097 0.95819 1.00663 0.96552 1.21112 0.93367 1.00808 0.99013 1.21109 0.99499 1.00356 0.92929 1.21032 0.95050 0.99204 0.96896 1.73528 1.02962 1.14149 1.18855 0.89738 0.88574 0.88248 0.80104 0.82054 0.75688 0.89985 0.91160 0.91833 0.91792 0.96458 0.96545 0.78318 0.93517 0.86385 0.86382 0.86423 0.86158 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 11.31 59.85 0.68 1.08 16 2 N -0.28 -2.68 3.70 -68.13 -0.25 -2.93 16 3 C -0.02 -0.18 11.46 -17.17 -0.20 -0.38 16 4 C -0.18 -2.06 10.81 -39.36 -0.43 -2.49 16 5 C -0.02 -0.21 7.13 -82.77 -0.59 -0.80 16 6 C 0.61 9.14 7.78 -12.39 -0.10 9.05 16 7 O -0.53 -9.38 16.59 5.30 0.09 -9.29 16 8 N -0.71 -9.26 3.76 -55.92 -0.21 -9.47 16 9 C 0.19 2.40 2.17 -69.08 -0.15 2.25 16 10 H 0.10 1.43 7.44 -51.93 -0.39 1.04 16 11 C -0.12 -1.51 4.73 -26.73 -0.13 -1.63 16 12 C -0.13 -2.08 5.22 -26.73 -0.14 -2.22 16 13 C 0.15 3.18 6.26 -4.05 -0.03 3.16 16 14 N -0.73 -19.41 5.60 -59.91 -0.34 -19.74 16 15 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 16 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 17 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 18 N -0.93 -29.04 13.06 55.49 0.72 -28.32 16 19 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 C -0.09 -1.08 4.91 -104.62 -0.51 -1.60 16 24 C -0.10 -1.21 9.33 -39.58 -0.37 -1.58 16 25 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 26 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 27 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 28 C -0.10 -1.23 9.67 -39.58 -0.38 -1.61 16 29 N -0.26 -3.22 11.67 33.42 0.39 -2.83 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.10 0.21 8.13 -51.93 -0.42 -0.21 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.41 4.94 8.33 -40.82 -0.34 4.60 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.09 7.75 -51.93 -0.40 0.69 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.38 10.68 7.67 -40.82 -0.31 10.37 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.12 1.26 7.71 -52.49 -0.40 0.86 16 45 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 47 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 48 H 0.12 1.34 8.04 -52.49 -0.42 0.92 16 LS Contribution 410.13 15.07 6.18 6.18 Total: -1.00 -36.88 410.13 -9.53 -46.40 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -7.31 Total: 11.59 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -3.78 Total: -9.42 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: 0.32 Total: -63.30 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.88 -9.53 -46.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277546921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.000 kcal (2) G-P(sol) polarization free energy of solvation -36.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds