Wall clock time and date at job start Wed Apr 1 2020 03:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45198 * 109.47223 * 2 1 4 4 C 1.34227 * 116.99633 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00545 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99735 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.52517 * 300.00564 * 6 4 3 8 8 N 1.46498 * 109.47345 * 59.99727 * 7 6 4 9 9 C 1.34774 * 120.00109 * 180.02562 * 8 7 6 10 10 O 1.21583 * 119.99919 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99868 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00072 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47289 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47131 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47130 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00100 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99896 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99699 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47182 * 90.00248 * 19 17 15 21 21 H 1.48498 * 109.47091 * 210.00192 * 19 17 15 22 22 H 1.48505 * 109.47095 * 329.99725 * 19 17 15 23 23 C 1.53181 * 109.52446 * 179.87493 * 6 4 3 24 24 C 1.53172 * 109.03453 * 183.05053 * 23 6 4 25 25 C 1.53090 * 109.16556 * 56.98675 * 24 23 6 26 26 O 1.42910 * 109.41246 * 302.38644 * 25 24 23 27 27 C 1.43032 * 114.12939 * 61.16026 * 26 25 24 28 28 H 1.09006 * 109.47129 * 300.00011 * 1 2 3 29 29 H 1.08995 * 109.47023 * 60.00276 * 1 2 3 30 30 H 1.08999 * 109.47150 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47179 * 239.99501 * 2 1 3 32 32 H 1.09007 * 109.46382 * 119.99923 * 2 1 3 33 33 H 1.09003 * 109.46554 * 300.00013 * 7 6 4 34 34 H 1.08995 * 109.47120 * 180.02562 * 7 6 4 35 35 H 0.97006 * 119.99928 * 359.97438 * 8 7 6 36 36 H 0.97001 * 120.00676 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 38 38 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 39 39 H 1.09001 * 109.46832 * 299.99854 * 13 12 11 40 40 H 1.08996 * 109.46952 * 59.99873 * 13 12 11 41 41 H 1.09001 * 109.46997 * 299.99574 * 14 13 12 42 42 H 1.09004 * 109.47298 * 59.99717 * 14 13 12 43 43 H 0.97007 * 119.99539 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.54027 * 302.92333 * 23 6 4 45 45 H 1.08998 * 109.53969 * 63.09682 * 23 6 4 46 46 H 1.09007 * 109.51742 * 176.88663 * 24 23 6 47 47 H 1.08999 * 109.53030 * 297.01403 * 24 23 6 48 48 H 1.09004 * 109.48584 * 62.36511 * 25 24 23 49 49 H 1.08996 * 109.48492 * 182.40537 * 25 24 23 50 50 H 1.09006 * 109.56315 * 178.89126 * 27 26 25 51 51 H 1.09000 * 109.47008 * 58.81562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 6 3.4505 3.6847 -1.2494 8 7 1.9876 3.7621 -1.2505 9 6 1.3462 4.3802 -2.2620 10 8 1.9817 4.8732 -3.1737 11 7 0.0004 4.4518 -2.2626 12 6 -0.6969 5.1243 -3.3618 13 6 -2.2065 5.0652 -3.1202 14 6 -2.9346 5.7668 -4.2683 15 6 -4.4216 5.7081 -4.0306 16 1 -4.8086 5.2196 -3.1487 17 6 -5.2880 6.2790 -4.9388 18 7 -4.8166 6.8743 -6.0125 19 14 -7.1311 6.2068 -4.6438 20 1 -7.5550 7.3986 -3.8660 21 1 -7.8408 6.1889 -5.9481 22 1 -7.4628 4.9753 -3.8829 23 6 5.4506 2.8585 0.0039 24 6 6.0237 4.2769 0.0804 25 6 5.4748 4.9742 1.3278 26 8 4.0467 4.9860 1.2757 27 6 3.4517 3.6855 1.2506 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.7869 3.1525 -2.1393 34 1 3.8680 4.6916 -1.2492 35 1 1.4805 3.3678 -0.5236 36 1 -0.5068 4.0582 -1.5354 37 1 -0.3777 6.1653 -3.4117 38 1 -0.4592 4.6260 -4.3017 39 1 -2.5259 4.0242 -3.0701 40 1 -2.4438 5.5637 -2.1804 41 1 -2.6153 6.8078 -4.3188 42 1 -2.6972 5.2679 -5.2080 43 1 -5.4262 7.2756 -6.6516 44 1 5.7838 2.2834 0.8678 45 1 5.7931 2.3742 -0.9106 46 1 7.1110 4.2277 0.1394 47 1 5.7321 4.8361 -0.8086 48 1 5.8015 4.4369 2.2182 49 1 5.8456 5.9985 1.3647 50 1 2.3660 3.7811 1.2311 51 1 3.7520 3.1313 2.1398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001311913989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:39 Heat of formation + Delta-G solvation = -183.431383 kcal Electronic energy + Delta-G solvation = -31063.575030 eV Core-core repulsion = 26769.514016 eV Total energy + Delta-G solvation = -4294.061013 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.68351 -39.85547 -39.38448 -37.14490 -35.92862 -35.09633 -33.73307 -33.22161 -32.31050 -31.62234 -30.90272 -27.27329 -26.02655 -25.86778 -24.89801 -23.41892 -22.85427 -21.89984 -20.78485 -20.34224 -19.78040 -18.34223 -17.97892 -17.28636 -17.12443 -16.55505 -16.34163 -16.12644 -15.95720 -15.43675 -14.99648 -14.81394 -14.46035 -14.35765 -14.30906 -14.08010 -13.72879 -13.56561 -13.51565 -13.13759 -13.12130 -12.88630 -12.35923 -12.25922 -12.04259 -11.91596 -11.77756 -11.66286 -11.56893 -11.54627 -11.05170 -10.94480 -10.88848 -10.68628 -10.67656 -10.57213 -10.06994 -10.00810 -9.82309 -9.41231 -9.14125 -9.09987 -8.53047 -8.35120 -5.99808 -4.02706 1.68206 2.08668 2.81462 3.31919 3.34844 3.38253 3.40867 3.44952 3.84264 4.02405 4.09965 4.27431 4.43226 4.46653 4.47914 4.52938 4.55597 4.62432 4.81930 4.88058 4.91675 5.09964 5.16551 5.22500 5.29238 5.35960 5.41251 5.41987 5.43244 5.45158 5.57301 5.66129 5.75668 5.76819 5.86579 6.00332 6.23186 6.44696 6.59081 6.63618 6.67042 6.85955 7.06657 7.12132 7.26536 7.66640 7.79973 7.99509 8.22215 8.40477 8.82536 9.04106 9.61234 11.11515 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014605 B = 0.002211 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.743770 B =12660.019153 C =13778.911981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.064 3.936 3 O -0.355 6.355 4 C 0.476 3.524 5 O -0.499 6.499 6 C -0.098 4.098 7 C 0.157 3.843 8 N -0.747 5.747 9 C 0.703 3.297 10 O -0.594 6.594 11 N -0.740 5.740 12 C 0.135 3.865 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.521 4.521 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.099 4.099 24 C -0.160 4.160 25 C 0.054 3.946 26 O -0.364 6.364 27 C 0.077 3.923 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.398 0.602 36 H 0.393 0.607 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.053 0.947 49 H 0.101 0.899 50 H 0.107 0.893 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.391 -11.929 18.925 30.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.010 4.010 3 O -0.272 6.272 4 C 0.318 3.682 5 O -0.386 6.386 6 C -0.100 4.100 7 C 0.032 3.968 8 N -0.407 5.407 9 C 0.403 3.597 10 O -0.473 6.473 11 N -0.395 5.395 12 C 0.012 3.988 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.137 4.137 24 C -0.198 4.198 25 C -0.023 4.023 26 O -0.281 6.281 27 C -0.001 4.001 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.235 0.765 36 H 0.226 0.774 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.072 0.928 49 H 0.119 0.881 50 H 0.125 0.875 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.994 -11.520 17.887 30.600 hybrid contribution -1.312 -0.941 0.694 1.758 sum 20.681 -12.461 18.581 30.467 Atomic orbital electron populations 1.21850 0.92016 1.03407 1.04024 1.23111 0.95773 0.79448 1.02631 1.86408 1.24026 1.33180 1.83574 1.23285 0.80907 0.91713 0.72339 1.90675 1.60433 1.42683 1.44784 1.21633 0.98294 0.89890 1.00191 1.21049 0.80380 1.01165 0.94161 1.45139 1.06449 1.62639 1.26458 1.15927 0.82274 0.79224 0.82277 1.90915 1.66199 1.52890 1.37272 1.45342 1.04355 1.61953 1.27803 1.21500 0.92616 0.96678 0.87978 1.21881 0.91044 1.01125 1.01724 1.19028 0.94389 0.95663 0.92308 1.21207 0.91494 1.36136 1.07129 0.92672 1.25032 0.98910 0.95370 0.95188 1.69970 1.34799 1.37205 1.11301 0.86588 0.85480 0.78379 0.77496 1.20667 1.21238 1.19928 1.21501 0.89619 0.97839 1.04717 1.22320 1.01573 0.95595 1.00295 1.22717 0.80913 1.02078 0.96588 1.88092 1.19695 1.25974 1.94383 1.22557 0.99344 0.84609 0.93553 0.91231 0.90929 0.90021 0.91070 0.91155 0.91219 0.89027 0.76476 0.77370 0.91952 0.92044 0.92835 0.92758 0.96238 0.96272 0.92947 0.90140 0.89839 0.89725 0.89902 0.92833 0.88127 0.87529 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 10.29 37.16 0.38 -0.54 16 2 C 0.06 0.47 6.19 37.16 0.23 0.70 16 3 O -0.36 -3.04 7.77 -39.25 -0.30 -3.34 16 4 C 0.48 4.50 6.55 36.01 0.24 4.74 16 5 O -0.50 -5.80 15.72 -18.75 -0.29 -6.09 16 6 C -0.10 -0.80 0.50 -155.52 -0.08 -0.87 16 7 C 0.16 1.65 4.15 -4.04 -0.02 1.63 16 8 N -0.75 -8.61 4.75 -65.23 -0.31 -8.92 16 9 C 0.70 11.05 8.57 -86.92 -0.74 10.30 16 10 O -0.59 -11.86 16.34 5.29 0.09 -11.78 16 11 N -0.74 -10.97 5.56 -65.22 -0.36 -11.34 16 12 C 0.14 2.45 5.67 -4.04 -0.02 2.42 16 13 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 19 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.10 -0.68 4.12 -26.55 -0.11 -0.79 16 24 C -0.16 -0.91 5.77 -26.60 -0.15 -1.06 16 25 C 0.05 0.32 6.84 37.20 0.25 0.57 16 26 O -0.36 -3.12 10.19 -35.23 -0.36 -3.48 16 27 C 0.08 0.57 5.34 37.21 0.20 0.76 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.03 6.14 -51.93 -0.32 0.71 16 35 H 0.40 3.76 5.36 -40.82 -0.22 3.54 16 36 H 0.39 4.68 8.49 -40.82 -0.35 4.33 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.08 0.53 8.03 -51.93 -0.42 0.11 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 47 H 0.08 0.55 6.63 -51.93 -0.34 0.21 16 48 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.11 0.75 6.82 -51.93 -0.35 0.40 16 51 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 409.18 15.07 6.17 6.17 Total: -1.00 -34.98 409.18 -8.90 -43.89 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -8.73 Total: 2.12 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -0.51 Total: 2.49 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.06 Total: -46.43 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.87 Total: -24.69 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.98 -8.90 -43.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311913989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.544 kcal (2) G-P(sol) polarization free energy of solvation -34.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds