Wall clock time and date at job start Wed Apr 1 2020 03:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45198 * 109.47223 * 2 1 4 4 C 1.34227 * 116.99633 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00545 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99735 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.52517 * 300.00564 * 6 4 3 8 8 N 1.46498 * 109.47345 * 59.99727 * 7 6 4 9 9 C 1.34774 * 120.00109 * 180.02562 * 8 7 6 10 10 O 1.21583 * 119.99919 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99868 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00072 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47289 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47131 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47130 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00100 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99896 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99699 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47182 * 90.00248 * 19 17 15 21 21 H 1.48498 * 109.47091 * 210.00192 * 19 17 15 22 22 H 1.48505 * 109.47095 * 329.99725 * 19 17 15 23 23 C 1.53181 * 109.52446 * 179.87493 * 6 4 3 24 24 C 1.53172 * 109.03453 * 183.05053 * 23 6 4 25 25 C 1.53090 * 109.16556 * 56.98675 * 24 23 6 26 26 O 1.42910 * 109.41246 * 302.38644 * 25 24 23 27 27 C 1.43032 * 114.12939 * 61.16026 * 26 25 24 28 28 H 1.09006 * 109.47129 * 300.00011 * 1 2 3 29 29 H 1.08995 * 109.47023 * 60.00276 * 1 2 3 30 30 H 1.08999 * 109.47150 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47179 * 239.99501 * 2 1 3 32 32 H 1.09007 * 109.46382 * 119.99923 * 2 1 3 33 33 H 1.09003 * 109.46554 * 300.00013 * 7 6 4 34 34 H 1.08995 * 109.47120 * 180.02562 * 7 6 4 35 35 H 0.97006 * 119.99928 * 359.97438 * 8 7 6 36 36 H 0.97001 * 120.00676 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 38 38 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 39 39 H 1.09001 * 109.46832 * 299.99854 * 13 12 11 40 40 H 1.08996 * 109.46952 * 59.99873 * 13 12 11 41 41 H 1.09001 * 109.46997 * 299.99574 * 14 13 12 42 42 H 1.09004 * 109.47298 * 59.99717 * 14 13 12 43 43 H 0.97007 * 119.99539 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.54027 * 302.92333 * 23 6 4 45 45 H 1.08998 * 109.53969 * 63.09682 * 23 6 4 46 46 H 1.09007 * 109.51742 * 176.88663 * 24 23 6 47 47 H 1.08999 * 109.53030 * 297.01403 * 24 23 6 48 48 H 1.09004 * 109.48584 * 62.36511 * 25 24 23 49 49 H 1.08996 * 109.48492 * 182.40537 * 25 24 23 50 50 H 1.09006 * 109.56315 * 178.89126 * 27 26 25 51 51 H 1.09000 * 109.47008 * 58.81562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 6 3.4505 3.6847 -1.2494 8 7 1.9876 3.7621 -1.2505 9 6 1.3462 4.3802 -2.2620 10 8 1.9817 4.8732 -3.1737 11 7 0.0004 4.4518 -2.2626 12 6 -0.6969 5.1243 -3.3618 13 6 -2.2065 5.0652 -3.1202 14 6 -2.9346 5.7668 -4.2683 15 6 -4.4216 5.7081 -4.0306 16 1 -4.8086 5.2196 -3.1487 17 6 -5.2880 6.2790 -4.9388 18 7 -4.8166 6.8743 -6.0125 19 14 -7.1311 6.2068 -4.6438 20 1 -7.5550 7.3986 -3.8660 21 1 -7.8408 6.1889 -5.9481 22 1 -7.4628 4.9753 -3.8829 23 6 5.4506 2.8585 0.0039 24 6 6.0237 4.2769 0.0804 25 6 5.4748 4.9742 1.3278 26 8 4.0467 4.9860 1.2757 27 6 3.4517 3.6855 1.2506 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.7869 3.1525 -2.1393 34 1 3.8680 4.6916 -1.2492 35 1 1.4805 3.3678 -0.5236 36 1 -0.5068 4.0582 -1.5354 37 1 -0.3777 6.1653 -3.4117 38 1 -0.4592 4.6260 -4.3017 39 1 -2.5259 4.0242 -3.0701 40 1 -2.4438 5.5637 -2.1804 41 1 -2.6153 6.8078 -4.3188 42 1 -2.6972 5.2679 -5.2080 43 1 -5.4262 7.2756 -6.6516 44 1 5.7838 2.2834 0.8678 45 1 5.7931 2.3742 -0.9106 46 1 7.1110 4.2277 0.1394 47 1 5.7321 4.8361 -0.8086 48 1 5.8015 4.4369 2.2182 49 1 5.8456 5.9985 1.3647 50 1 2.3660 3.7811 1.2311 51 1 3.7520 3.1313 2.1398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001311913989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:38 Heat of formation + Delta-G solvation = -207.043958 kcal Electronic energy + Delta-G solvation = -31064.598948 eV Core-core repulsion = 26769.514016 eV Total energy + Delta-G solvation = -4295.084931 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.41940 -40.91946 -40.20059 -37.87154 -37.16117 -36.34757 -35.16555 -34.48884 -33.14986 -32.68917 -32.03115 -28.78937 -27.21105 -26.41739 -25.69016 -24.69549 -23.88980 -22.51130 -22.27170 -21.84241 -20.50268 -19.34131 -18.80318 -18.50295 -18.02383 -17.87927 -17.27389 -16.91302 -16.87042 -16.54987 -16.45027 -15.91247 -15.70912 -15.47611 -15.26675 -15.02015 -14.62554 -14.47521 -14.23770 -14.14756 -13.96783 -13.70811 -13.62169 -13.56996 -13.39566 -12.96533 -12.73599 -12.63696 -12.51703 -12.50277 -12.34275 -12.16285 -12.09157 -11.70033 -11.63547 -11.61862 -11.56391 -11.31009 -11.28577 -11.12264 -10.57810 -10.53011 -10.38277 -9.76054 -8.17122 -6.28368 0.92539 1.41987 1.43321 1.44765 1.55493 1.67984 2.16178 2.43870 2.81643 3.12357 3.16754 3.28438 3.43308 3.52635 3.66857 3.97294 4.00728 4.00972 4.05499 4.20615 4.27207 4.31800 4.33632 4.38219 4.46977 4.57530 4.60167 4.65297 4.67201 4.79419 4.85024 4.94433 4.96515 4.99788 5.02490 5.05207 5.14496 5.20441 5.24131 5.38740 5.41155 5.50104 5.57668 5.74705 5.87245 5.99405 6.12936 6.25394 6.51818 6.89153 7.10908 7.41057 7.58625 8.95104 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014605 B = 0.002211 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.743770 B =12660.019153 C =13778.911981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.356 6.356 4 C 0.477 3.523 5 O -0.522 6.522 6 C -0.089 4.089 7 C 0.158 3.842 8 N -0.728 5.728 9 C 0.701 3.299 10 O -0.639 6.639 11 N -0.728 5.728 12 C 0.150 3.850 13 C -0.099 4.099 14 C 0.024 3.976 15 C -0.539 4.539 16 H 0.067 0.933 17 C -0.005 4.005 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.259 1.259 23 C -0.098 4.098 24 C -0.155 4.155 25 C 0.048 3.952 26 O -0.385 6.385 27 C 0.077 3.923 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.411 0.589 36 H 0.411 0.589 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.068 0.932 40 H 0.069 0.931 41 H -0.008 1.008 42 H -0.008 1.008 43 H 0.263 0.737 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.105 0.895 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.109 0.891 50 H 0.109 0.891 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.878 -12.969 21.501 32.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.272 6.272 4 C 0.320 3.680 5 O -0.410 6.410 6 C -0.091 4.091 7 C 0.034 3.966 8 N -0.387 5.387 9 C 0.401 3.599 10 O -0.521 6.521 11 N -0.383 5.383 12 C 0.026 3.974 13 C -0.137 4.137 14 C -0.014 4.014 15 C -0.577 4.577 16 H 0.086 0.914 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.791 3.209 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.183 1.183 23 C -0.136 4.136 24 C -0.193 4.193 25 C -0.028 4.028 26 O -0.303 6.303 27 C 0.000 4.000 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.250 0.750 36 H 0.247 0.753 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.071 0.929 44 H 0.107 0.893 45 H 0.094 0.906 46 H 0.123 0.877 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.127 0.873 50 H 0.127 0.873 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 21.474 -12.595 20.534 32.271 hybrid contribution -1.091 -0.639 -0.110 1.269 sum 20.383 -13.235 20.424 31.745 Atomic orbital electron populations 1.21857 0.90716 1.04368 1.03899 1.23280 0.96762 0.78788 1.02620 1.86398 1.23553 1.34072 1.83215 1.23495 0.81023 0.91839 0.71616 1.90666 1.60957 1.43450 1.45947 1.21606 0.99121 0.88927 0.99426 1.21069 0.79387 1.01116 0.95061 1.44969 1.07011 1.61227 1.25492 1.16066 0.82243 0.79160 0.82471 1.90889 1.67123 1.54846 1.39234 1.44985 1.04243 1.61633 1.27487 1.21079 0.91962 0.95960 0.88448 1.21579 0.91121 1.01289 0.99736 1.18943 0.94574 0.94432 0.93477 1.21684 0.92660 1.35868 1.07456 0.91434 1.26032 1.04406 0.94913 0.94849 1.70120 1.36728 1.38328 1.12460 0.85417 0.78877 0.79063 0.77495 1.19843 1.21162 1.18331 1.21529 0.88606 0.98718 1.04716 1.22300 1.02774 0.94457 0.99752 1.22904 0.79701 1.02983 0.97190 1.88066 1.21208 1.26553 1.94465 1.22621 0.99503 0.84394 0.93503 0.90349 0.91939 0.88589 0.91996 0.90324 0.92494 0.89581 0.74952 0.75258 0.93513 0.93609 0.91302 0.91274 0.98985 0.99005 0.92864 0.89313 0.90587 0.87685 0.91224 0.91183 0.87258 0.87346 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.29 71.98 0.74 -0.76 16 2 C 0.06 0.78 6.19 71.98 0.45 1.23 16 3 O -0.36 -5.59 7.77 -51.39 -0.40 -5.99 16 4 C 0.48 8.52 6.55 71.24 0.47 8.98 16 5 O -0.52 -11.69 15.72 21.97 0.35 -11.34 16 6 C -0.09 -1.35 0.50 -52.83 -0.03 -1.37 16 7 C 0.16 3.27 4.15 86.38 0.36 3.63 16 8 N -0.73 -16.20 4.75 -478.55 -2.27 -18.47 16 9 C 0.70 21.80 8.57 179.06 1.53 23.34 16 10 O -0.64 -25.99 16.34 -3.98 -0.07 -26.05 16 11 N -0.73 -20.87 5.56 -478.53 -2.66 -23.53 16 12 C 0.15 5.44 5.67 86.38 0.49 5.93 16 13 C -0.10 -3.82 5.27 30.59 0.16 -3.66 16 14 C 0.02 1.22 4.97 29.85 0.15 1.37 16 15 C -0.54 -29.96 9.11 25.60 0.23 -29.73 16 16 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 17 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 18 N -0.94 -57.41 13.29 21.45 0.28 -57.12 16 19 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 23 C -0.10 -1.23 4.12 30.71 0.13 -1.11 16 24 C -0.16 -1.55 5.77 30.68 0.18 -1.37 16 25 C 0.05 0.48 6.84 72.01 0.49 0.98 16 26 O -0.38 -5.99 10.19 -148.98 -1.52 -7.50 16 27 C 0.08 0.99 5.34 72.01 0.38 1.38 16 28 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 32 H 0.08 0.93 8.13 -2.38 -0.02 0.91 16 33 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 1.93 6.14 -2.39 -0.01 1.92 16 35 H 0.41 7.10 5.36 -92.70 -0.50 6.60 16 36 H 0.41 8.87 8.49 -92.71 -0.79 8.08 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 41 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 42 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 43 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 44 H 0.09 1.00 8.03 -2.39 -0.02 0.99 16 45 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.10 0.62 8.14 -2.38 -0.02 0.61 16 47 H 0.07 0.89 6.63 -2.39 -0.02 0.88 16 48 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 49 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.11 1.31 6.82 -2.38 -0.02 1.29 16 51 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -76.38 409.18 1.58 -74.80 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -0.35 Total: 20.44 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 6.19 Total: 9.04 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -4.65 Total: -99.12 kcal Atomic # 8 Polarization: -49.25 SS G_CDS: -1.64 Total: -50.89 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -76.38 1.58 -74.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311913989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.246 kcal (2) G-P(sol) polarization free energy of solvation -76.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds