Wall clock time and date at job start Wed Apr 1 2020 04:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36883 * 126.39338 * 2 1 4 4 C 1.34668 * 106.81643 * 180.02562 * 3 2 1 5 5 N 1.34136 * 108.02022 * 359.77869 * 4 3 2 6 6 C 1.30499 * 109.25179 * 0.37360 * 5 4 3 7 7 C 1.50706 * 125.64801 * 179.88956 * 6 5 4 8 8 C 1.52991 * 109.47398 * 269.69281 * 7 6 5 9 9 C 1.50696 * 109.47431 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99911 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00181 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99854 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47030 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.46800 * 294.99531 * 13 12 11 15 15 N 1.46497 * 109.47307 * 54.99896 * 13 12 11 16 16 C 1.36935 * 120.00289 * 56.10331 * 15 13 12 17 17 H 1.08003 * 119.99760 * 3.83617 * 16 15 13 18 18 C 1.38807 * 120.00260 * 183.83618 * 16 15 13 19 19 N 1.31617 * 120.00141 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99873 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47081 * 90.00315 * 20 18 16 22 22 H 1.48504 * 109.47000 * 210.00117 * 20 18 16 23 23 H 1.48494 * 109.47270 * 330.00164 * 20 18 16 24 24 C 1.50699 * 109.47144 * 174.99714 * 13 12 11 25 25 C 1.38235 * 120.00132 * 26.74756 * 24 13 12 26 26 C 1.38234 * 120.00091 * 179.97438 * 25 24 13 27 27 C 1.38233 * 120.00167 * 359.96663 * 26 25 24 28 28 C 1.38237 * 119.99797 * 0.02562 * 27 26 25 29 29 C 1.38232 * 120.00207 * 206.71542 * 24 13 12 30 30 H 1.08998 * 109.47107 * 269.97209 * 1 2 3 31 31 H 1.09000 * 109.47193 * 29.97403 * 1 2 3 32 32 H 1.09008 * 109.47145 * 149.97188 * 1 2 3 33 33 H 1.08000 * 126.59541 * 0.05903 * 3 2 1 34 34 H 1.08001 * 125.99337 * 180.02562 * 4 3 2 35 35 H 1.08996 * 109.46895 * 149.68453 * 7 6 5 36 36 H 1.08999 * 109.46686 * 29.69122 * 7 6 5 37 37 H 1.09008 * 109.47398 * 59.99807 * 8 7 6 38 38 H 1.08999 * 109.46932 * 300.00141 * 8 7 6 39 39 H 0.96996 * 120.00096 * 0.02562 * 11 9 8 40 40 H 1.08997 * 109.47671 * 59.99720 * 12 11 9 41 41 H 1.08999 * 109.47286 * 299.99851 * 12 11 9 42 42 H 0.97005 * 120.00156 * 236.10618 * 15 13 12 43 43 H 0.96998 * 120.00174 * 179.97438 * 19 18 16 44 44 H 1.08007 * 120.00012 * 359.96898 * 25 24 13 45 45 H 1.08005 * 119.99791 * 179.97438 * 26 25 24 46 46 H 1.07998 * 119.99854 * 179.72468 * 27 26 25 47 47 H 1.07997 * 119.99962 * 179.97438 * 28 27 26 48 48 H 1.08006 * 119.99869 * 0.02562 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2771 1.1019 0.0000 4 6 3.5460 0.6506 -0.0006 5 7 3.5095 -0.6902 0.0040 6 6 2.2663 -1.0869 -0.0006 7 6 1.8018 -2.5206 -0.0002 8 6 1.6434 -3.0059 -1.4424 9 6 1.1795 -4.4397 -1.4419 10 8 0.9943 -5.0168 -0.3914 11 7 0.9705 -5.0807 -2.6089 12 6 0.5190 -6.4744 -2.6084 13 6 0.3607 -6.9598 -4.0507 14 1 -0.4369 -6.3985 -4.5374 15 7 1.6165 -6.7528 -4.7762 16 6 2.7795 -7.2977 -4.3012 17 1 2.7613 -7.9311 -3.4266 18 6 3.9817 -7.0360 -4.9437 19 7 5.0996 -7.5593 -4.4868 20 14 4.0131 -5.9411 -6.4568 21 1 4.2132 -4.5293 -6.0422 22 1 5.1264 -6.3582 -7.3467 23 1 2.7246 -6.0654 -7.1846 24 6 0.0157 -8.4267 -4.0521 25 6 -0.6360 -8.9845 -2.9681 26 6 -0.9529 -10.3301 -2.9696 27 6 -0.6188 -11.1177 -4.0553 28 6 0.0328 -10.5598 -5.1394 29 6 0.3503 -9.2145 -5.1376 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5143 33 1 1.9612 2.1346 0.0009 34 1 4.4368 1.2613 -0.0003 35 1 0.8437 -2.5919 0.5146 36 1 2.5369 -3.1404 0.5131 37 1 2.6017 -2.9346 -1.9571 38 1 0.9083 -2.3860 -1.9556 39 1 1.1189 -4.6193 -3.4491 40 1 -0.4390 -6.5459 -2.0934 41 1 1.2543 -7.0944 -2.0954 42 1 1.6242 -6.2298 -5.5931 43 1 5.9397 -7.3768 -4.9360 44 1 -0.8975 -8.3691 -2.1199 45 1 -1.4618 -10.7659 -2.1224 46 1 -0.8625 -12.1698 -4.0545 47 1 0.2942 -11.1752 -5.9875 48 1 0.8594 -8.7787 -5.9846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317722634.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:32 Heat of formation + Delta-G solvation = 66.856180 kcal Electronic energy + Delta-G solvation = -29108.730276 eV Core-core repulsion = 25165.124217 eV Total energy + Delta-G solvation = -3943.606059 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.18728 -39.51814 -38.77910 -36.06646 -34.20879 -33.60394 -33.47873 -31.96410 -30.56848 -29.90946 -29.21657 -27.53112 -27.10018 -24.91665 -23.78016 -22.23320 -21.72577 -21.48277 -20.06867 -19.80219 -19.56099 -18.06846 -17.36160 -16.70882 -16.39556 -15.83982 -15.63243 -15.34201 -14.91953 -14.72236 -14.41086 -14.25749 -14.12345 -13.83891 -13.44920 -13.27675 -13.12656 -12.98397 -12.89029 -12.82680 -12.77014 -12.38250 -12.17358 -12.03020 -11.99025 -11.50066 -11.13336 -11.03971 -10.86466 -10.64469 -10.47991 -10.14662 -10.00904 -9.73472 -9.60643 -9.53684 -9.10848 -8.51341 -8.46724 -8.38744 -8.16611 -7.43488 -5.80844 -3.21579 1.86061 1.89463 1.94607 2.61950 3.01493 3.06373 3.28004 3.30925 3.40245 3.63443 4.29456 4.40651 4.44088 4.51225 4.65959 4.78718 4.94084 5.03729 5.09545 5.11905 5.20621 5.30505 5.34410 5.41239 5.42439 5.49325 5.51728 5.57501 5.60136 5.71549 5.86075 5.93321 5.97702 6.05636 6.14507 6.16068 6.21227 6.48457 6.57165 6.62801 6.66071 6.87132 6.98114 7.03158 7.04607 7.23326 7.52978 7.91043 7.97240 8.05455 8.35571 8.63695 9.10977 9.81654 9.97616 11.36802 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.011280 B = 0.002872 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.742323 B = 9746.602964 C =11487.332336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.461 5.461 3 C -0.066 4.066 4 C -0.027 4.027 5 N -0.486 5.486 6 C 0.213 3.787 7 C -0.017 4.017 8 C -0.135 4.135 9 C 0.514 3.486 10 O -0.553 6.553 11 N -0.703 5.703 12 C 0.116 3.884 13 C 0.204 3.796 14 H 0.073 0.927 15 N -0.740 5.740 16 C -0.241 4.241 17 H 0.091 0.909 18 C 0.013 3.987 19 N -0.926 5.926 20 Si 0.878 3.122 21 H -0.284 1.284 22 H -0.292 1.292 23 H -0.278 1.278 24 C -0.079 4.079 25 C -0.124 4.124 26 C -0.130 4.130 27 C -0.132 4.132 28 C -0.129 4.129 29 C -0.075 4.075 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.172 0.828 34 H 0.169 0.831 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.400 0.600 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.364 0.636 43 H 0.260 0.740 44 H 0.119 0.881 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.113 0.887 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.061 11.943 4.144 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.144 5.144 3 C -0.198 4.198 4 C -0.176 4.176 5 N -0.204 5.204 6 C -0.050 4.050 7 C -0.057 4.057 8 C -0.176 4.176 9 C 0.300 3.700 10 O -0.432 6.432 11 N -0.352 5.352 12 C -0.009 4.009 13 C 0.093 3.907 14 H 0.091 0.909 15 N -0.382 5.382 16 C -0.370 4.370 17 H 0.109 0.891 18 C -0.184 4.184 19 N -0.573 5.573 20 Si 0.709 3.291 21 H -0.211 1.211 22 H -0.219 1.219 23 H -0.205 1.205 24 C -0.082 4.082 25 C -0.142 4.142 26 C -0.148 4.148 27 C -0.150 4.150 28 C -0.147 4.147 29 C -0.094 4.094 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.190 0.810 34 H 0.186 0.814 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.235 0.765 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.197 0.803 43 H 0.070 0.930 44 H 0.136 0.864 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.131 0.869 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.452 10.912 5.018 18.792 hybrid contribution -0.211 1.538 -1.599 2.229 sum -14.663 12.450 3.419 19.538 Atomic orbital electron populations 1.22065 0.76812 1.04730 1.03699 1.45338 1.07514 1.06696 1.54836 1.22659 0.91464 0.92425 1.13277 1.22334 0.96403 0.91292 1.07553 1.70320 1.18530 1.11910 1.19633 1.23368 0.85721 0.90899 1.04971 1.19712 1.03046 0.86129 0.96777 1.21589 1.04071 0.93840 0.98089 1.20327 0.77385 0.88351 0.83957 1.90676 1.52504 1.68702 1.31318 1.45689 1.67515 1.13770 1.08259 1.21798 0.98834 0.81976 0.98310 1.19287 0.89042 0.90762 0.91601 0.90869 1.42797 1.03973 1.63570 1.27856 1.18896 0.83042 1.24247 1.10824 0.89097 1.24655 0.95321 0.99852 0.98553 1.69689 0.97881 1.47991 1.41694 0.86678 0.76945 0.81281 0.84202 1.21099 1.21857 1.20451 1.20574 0.96364 0.97407 0.93838 1.21101 0.99818 0.95198 0.98113 1.20984 1.01445 0.94219 0.98158 1.20998 1.00411 0.99108 0.94525 1.21103 0.99566 0.95529 0.98472 1.20977 0.96586 0.93031 0.98757 0.90452 0.89633 0.89265 0.81039 0.81402 0.89752 0.87666 0.87884 0.89690 0.76550 0.92440 0.90648 0.80285 0.92992 0.86352 0.86944 0.87094 0.86871 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 10.79 59.85 0.65 1.06 16 2 N -0.46 -4.70 3.15 -121.28 -0.38 -5.08 16 3 C -0.07 -0.65 11.58 -16.56 -0.19 -0.84 16 4 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 5 N -0.49 -7.47 11.25 -10.81 -0.12 -7.59 16 6 C 0.21 2.80 7.16 -155.42 -1.11 1.68 16 7 C -0.02 -0.22 4.60 -27.89 -0.13 -0.35 16 8 C -0.13 -1.73 5.68 -27.89 -0.16 -1.88 16 9 C 0.51 8.28 7.83 -10.99 -0.09 8.20 16 10 O -0.55 -10.65 15.98 5.55 0.09 -10.56 16 11 N -0.70 -11.19 5.39 -60.30 -0.32 -11.51 16 12 C 0.12 1.98 3.89 -4.04 -0.02 1.97 16 13 C 0.20 3.42 3.26 -69.08 -0.23 3.19 16 14 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 15 N -0.74 -14.93 3.63 -54.55 -0.20 -15.13 16 16 C -0.24 -6.13 8.96 -15.06 -0.13 -6.26 16 17 H 0.09 2.65 7.43 -52.48 -0.39 2.26 16 18 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 19 N -0.93 -28.21 13.97 55.49 0.78 -27.44 16 20 Si 0.88 20.58 27.77 -169.99 -4.72 15.86 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -5.95 6.47 56.52 0.37 -5.59 16 24 C -0.08 -1.37 5.18 -104.63 -0.54 -1.91 16 25 C -0.12 -1.96 9.14 -39.58 -0.36 -2.32 16 26 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 27 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 28 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 29 C -0.08 -1.34 8.98 -39.59 -0.36 -1.70 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.48 7.66 -51.92 -0.40 0.09 16 33 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.08 0.95 7.66 -51.93 -0.40 0.55 16 36 H 0.10 1.55 8.10 -51.93 -0.42 1.13 16 37 H 0.10 1.46 8.14 -51.92 -0.42 1.03 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.40 5.85 8.14 -40.82 -0.33 5.52 16 40 H 0.06 0.89 6.86 -51.93 -0.36 0.53 16 41 H 0.08 1.59 7.33 -51.93 -0.38 1.20 16 42 H 0.36 7.13 5.87 -40.82 -0.24 6.89 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.12 1.70 6.22 -52.48 -0.33 1.38 16 45 H 0.11 1.38 8.06 -52.48 -0.42 0.95 16 46 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 47 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 48 H 0.13 2.35 7.50 -52.48 -0.39 1.96 16 LS Contribution 398.44 15.07 6.00 6.00 Total: -1.00 -34.94 398.44 -10.08 -45.02 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -7.03 Total: 17.02 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -4.17 Total: -6.59 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -0.25 Total: -66.75 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.72 Total: 15.86 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.94 -10.08 -45.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317722634.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.874 kcal (2) G-P(sol) polarization free energy of solvation -34.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds