Wall clock time and date at job start Wed Apr 1 2020 04:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36086 * 126.30233 * 2 1 4 4 N 1.30069 * 110.13076 * 179.97438 * 3 2 1 5 5 C 1.35871 * 109.55698 * 0.02562 * 4 3 2 6 6 C 1.39404 * 133.52062 * 179.97438 * 5 4 3 7 7 C 1.39127 * 119.51059 * 179.97438 * 6 5 4 8 8 C 1.47685 * 119.90332 * 180.02562 * 7 6 5 9 9 O 1.21573 * 119.99663 * 359.97438 * 8 7 6 10 10 N 1.34770 * 119.99711 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99821 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47187 * 175.12439 * 11 10 8 13 13 N 1.46495 * 110.01671 * 303.90535 * 12 11 10 14 14 C 1.36938 * 120.00073 * 301.45485 * 13 12 11 15 15 H 1.07995 * 119.99999 * 354.61916 * 14 13 12 16 16 C 1.38814 * 119.99970 * 174.60469 * 14 13 12 17 17 N 1.31622 * 120.00006 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47097 * 90.00367 * 18 16 14 20 20 H 1.48500 * 109.47340 * 210.00339 * 18 16 14 21 21 H 1.48503 * 109.47230 * 330.00594 * 18 16 14 22 22 C 1.54268 * 110.02997 * 182.46029 * 12 11 10 23 23 C 1.54893 * 104.19077 * 217.10659 * 22 12 11 24 24 C 1.54886 * 102.75015 * 37.94604 * 23 22 12 25 25 C 1.53883 * 110.02870 * 65.29610 * 12 11 10 26 26 C 1.40135 * 120.19313 * 359.97438 * 7 6 5 27 27 C 1.36435 * 120.45579 * 0.02562 * 26 7 6 28 28 C 1.37797 * 126.30532 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47559 * 89.97715 * 1 2 3 30 30 H 1.09002 * 109.46859 * 209.97871 * 1 2 3 31 31 H 1.08999 * 109.46804 * 329.96923 * 1 2 3 32 32 H 1.07996 * 124.93731 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.24605 * 0.02562 * 6 5 4 34 34 H 0.96994 * 120.00323 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.47306 * 295.12809 * 11 10 8 36 36 H 1.08998 * 109.47040 * 55.12586 * 11 10 8 37 37 H 0.97002 * 120.00020 * 121.46554 * 13 12 11 38 38 H 0.96997 * 120.00223 * 179.97438 * 17 16 14 39 39 H 1.09001 * 110.48748 * 335.78169 * 22 12 11 40 40 H 1.09000 * 110.48509 * 98.43452 * 22 12 11 41 41 H 1.09000 * 110.75843 * 279.62388 * 23 22 12 42 42 H 1.09004 * 110.75177 * 156.25989 * 23 22 12 43 43 H 1.09007 * 110.48488 * 203.37186 * 24 23 22 44 44 H 1.09006 * 110.48522 * 80.73528 * 24 23 22 45 45 H 1.08999 * 110.02793 * 238.56717 * 25 12 11 46 46 H 1.09000 * 110.03386 * 359.97438 * 25 12 11 47 47 H 1.08003 * 119.77339 * 179.97438 * 26 7 6 48 48 H 1.08002 * 119.92190 * 179.72703 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2707 1.0967 0.0000 4 7 3.5199 0.7345 0.0005 5 6 3.6001 -0.6219 0.0004 6 6 4.6659 -1.5205 0.0003 7 6 4.4094 -2.8879 0.0006 8 6 5.5319 -3.8476 0.0011 9 8 6.6781 -3.4422 0.0007 10 7 5.2856 -5.1726 0.0020 11 6 6.3992 -6.1246 0.0019 12 6 5.8529 -7.5484 0.1256 13 7 5.0217 -7.6640 1.3263 14 6 5.5547 -7.3887 2.5572 15 1 6.6082 -7.1711 2.6530 16 6 4.7409 -7.3889 3.6818 17 7 3.4571 -7.6543 3.5650 18 14 5.4679 -7.0126 5.3608 19 1 5.3964 -5.5512 5.6149 20 1 4.6995 -7.7350 6.4062 21 1 6.8860 -7.4522 5.3961 22 6 7.0179 -8.5577 0.1888 23 6 6.5056 -9.7797 -0.6134 24 6 5.7206 -9.1213 -1.7750 25 6 5.0281 -7.9068 -1.1232 26 6 3.0890 -3.3572 0.0016 27 6 2.0435 -2.4807 0.0017 28 6 2.2809 -1.1105 -0.0005 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5143 32 1 1.9234 2.1193 0.0004 33 1 5.6832 -1.1578 0.0008 34 1 4.3712 -5.4959 0.0026 35 1 6.9584 -6.0296 -0.9289 36 1 7.0576 -5.9136 0.8445 37 1 4.0937 -7.9358 1.2494 38 1 2.8885 -7.6549 4.3509 39 1 7.9097 -8.1408 -0.2792 40 1 7.2237 -8.8385 1.2217 41 1 5.8461 -10.3948 -0.0012 42 1 7.3398 -10.3681 -0.9956 43 1 4.9798 -9.8135 -2.1753 44 1 6.4030 -8.7955 -2.5601 45 1 4.0096 -8.1676 -0.8356 46 1 5.0166 -7.0662 -1.8170 47 1 2.8976 -4.4202 0.0014 48 1 1.0292 -2.8519 -0.0020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319363371.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:29 Heat of formation + Delta-G solvation = 48.518536 kcal Electronic energy + Delta-G solvation = -29868.202837 eV Core-core repulsion = 25923.801598 eV Total energy + Delta-G solvation = -3944.401239 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.24820 -39.56456 -38.25811 -36.71350 -34.47154 -34.04850 -33.28973 -30.86557 -30.50483 -29.58291 -28.25589 -27.78588 -27.19848 -24.84198 -23.55956 -22.87657 -22.68046 -20.79911 -20.52566 -19.77299 -18.67634 -17.64504 -17.26305 -16.96799 -16.60841 -16.01476 -15.59696 -15.44063 -14.69925 -14.54763 -14.48011 -14.12274 -14.06860 -13.71274 -13.51169 -13.43044 -13.31053 -13.12363 -12.75623 -12.64866 -12.59579 -11.98759 -11.54687 -11.47332 -11.41682 -11.08791 -10.76327 -10.72204 -10.62747 -10.51527 -10.49589 -10.22319 -10.12872 -10.08209 -9.84308 -9.63187 -9.48591 -8.89683 -8.53752 -8.31787 -8.14383 -6.99962 -5.79967 -3.08378 0.91511 1.11300 2.40119 2.65537 3.26452 3.44202 3.50164 3.51655 3.66373 4.10997 4.21746 4.36065 4.38490 4.58636 4.76882 4.87934 5.04134 5.05572 5.12445 5.17081 5.24843 5.28793 5.32703 5.39422 5.56879 5.63908 5.70512 5.80526 5.95326 5.96317 6.03826 6.09961 6.19675 6.26854 6.31232 6.32128 6.39422 6.42237 6.47006 6.58111 6.62874 6.71899 6.78472 6.84204 6.92927 7.02638 7.13996 7.71195 7.73064 8.12122 8.38900 8.76116 9.51151 10.04378 10.39801 11.42152 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.010541 B = 0.003298 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.750610 B = 8488.325548 C = 9661.992201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.498 5.498 3 C 0.252 3.748 4 N -0.487 5.487 5 C 0.031 3.969 6 C 0.002 3.998 7 C -0.136 4.136 8 C 0.558 3.442 9 O -0.553 6.553 10 N -0.693 5.693 11 C 0.120 3.880 12 C 0.188 3.812 13 N -0.711 5.711 14 C -0.231 4.231 15 H 0.070 0.930 16 C -0.007 4.007 17 N -0.932 5.932 18 Si 0.899 3.101 19 H -0.290 1.290 20 H -0.293 1.293 21 H -0.282 1.282 22 C -0.132 4.132 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.127 4.127 26 C -0.060 4.060 27 C -0.118 4.118 28 C 0.065 3.935 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.213 0.787 33 H 0.143 0.857 34 H 0.401 0.599 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.138 0.862 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.788 9.825 -11.957 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.188 5.188 3 C -0.034 4.034 4 N -0.206 5.206 5 C -0.086 4.086 6 C -0.018 4.018 7 C -0.141 4.141 8 C 0.344 3.656 9 O -0.433 6.433 10 N -0.343 5.343 11 C -0.006 4.006 12 C 0.096 3.904 13 N -0.352 5.352 14 C -0.362 4.362 15 H 0.088 0.912 16 C -0.203 4.203 17 N -0.580 5.580 18 Si 0.731 3.269 19 H -0.218 1.218 20 H -0.219 1.219 21 H -0.207 1.207 22 C -0.172 4.172 23 C -0.155 4.155 24 C -0.158 4.158 25 C -0.165 4.165 26 C -0.081 4.081 27 C -0.139 4.139 28 C -0.045 4.045 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.230 0.770 33 H 0.161 0.839 34 H 0.237 0.763 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.218 0.782 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.155 0.845 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.319 10.655 -11.789 17.101 hybrid contribution -1.329 -0.402 1.200 1.835 sum -7.648 10.253 -10.589 16.606 Atomic orbital electron populations 1.21989 0.76020 1.04823 1.03469 1.45263 1.07349 1.05567 1.60663 1.25330 0.85174 0.93309 0.99604 1.70461 1.18221 1.10913 1.20978 1.18875 0.91952 0.90169 1.07599 1.20367 0.98263 0.89974 0.93236 1.19734 0.93593 0.93363 1.07450 1.17990 0.88139 0.82572 0.76864 1.90730 1.22215 1.78982 1.51377 1.45613 1.10981 1.04822 1.72857 1.21908 0.88678 0.89614 1.00423 1.20471 0.91359 0.90982 0.87565 1.42544 1.11025 1.81088 1.00568 1.19090 0.93372 1.39336 0.84400 0.91236 1.24649 0.95467 1.02503 0.97708 1.69641 1.03661 1.55977 1.28750 0.86305 0.78124 0.77893 0.84605 1.21787 1.21932 1.20742 1.22824 0.97486 0.95746 1.01135 1.22386 0.98926 0.97617 0.96526 1.22300 0.98828 0.97028 0.97655 1.22443 0.99722 0.97631 0.96676 1.20832 0.90964 0.99924 0.96353 1.19546 0.99884 0.88439 1.06042 1.19044 0.91163 0.89500 1.04798 0.90689 0.89596 0.89336 0.77021 0.83934 0.76300 0.92982 0.91319 0.78159 0.93663 0.92870 0.90269 0.91424 0.92746 0.92395 0.92265 0.91322 0.92000 0.84471 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.40 11.17 59.85 0.67 1.07 16 2 N -0.50 -4.92 3.20 -123.14 -0.39 -5.32 16 3 C 0.25 2.53 12.50 -89.77 -1.12 1.40 16 4 N -0.49 -7.05 11.28 -12.07 -0.14 -7.18 16 5 C 0.03 0.49 7.22 -84.72 -0.61 -0.12 16 6 C 0.00 0.03 9.64 -38.82 -0.37 -0.34 16 7 C -0.14 -2.28 5.87 -105.00 -0.62 -2.89 16 8 C 0.56 10.68 7.76 -12.40 -0.10 10.59 16 9 O -0.55 -12.21 16.32 5.30 0.09 -12.12 16 10 N -0.69 -12.53 5.05 -61.30 -0.31 -12.84 16 11 C 0.12 2.23 3.99 -4.04 -0.02 2.21 16 12 C 0.19 3.37 0.68 -130.70 -0.09 3.29 16 13 N -0.71 -15.73 4.76 -46.20 -0.22 -15.95 16 14 C -0.23 -5.94 8.39 -15.06 -0.13 -6.06 16 15 H 0.07 1.82 7.23 -52.49 -0.38 1.44 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 17 N -0.93 -26.45 13.06 55.49 0.73 -25.72 16 18 Si 0.90 22.32 29.55 -169.99 -5.02 17.30 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 C -0.13 -2.25 5.94 -25.07 -0.15 -2.40 16 23 C -0.12 -1.73 6.91 -24.74 -0.17 -1.90 16 24 C -0.12 -1.60 6.83 -25.08 -0.17 -1.78 16 25 C -0.13 -1.89 5.80 -25.61 -0.15 -2.04 16 26 C -0.06 -0.87 9.47 -39.52 -0.37 -1.24 16 27 C -0.12 -1.50 9.97 -39.92 -0.40 -1.90 16 28 C 0.06 0.86 6.87 -83.95 -0.58 0.29 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.21 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.14 2.44 7.63 -52.49 -0.40 2.04 16 34 H 0.40 6.79 5.99 -40.82 -0.24 6.55 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.47 7.49 -51.93 -0.39 1.09 16 37 H 0.38 9.04 7.28 -40.82 -0.30 8.75 16 38 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.05 0.83 7.85 -51.93 -0.41 0.42 16 40 H 0.08 1.55 7.12 -51.93 -0.37 1.18 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.05 7.44 -51.93 -0.39 0.67 16 46 H 0.06 0.85 7.54 -51.93 -0.39 0.46 16 47 H 0.14 1.81 6.36 -52.48 -0.33 1.48 16 48 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 390.54 15.07 5.89 5.89 Total: -1.00 -33.68 390.54 -10.82 -44.50 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -6.96 Total: 13.58 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -4.47 Total: -2.12 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -0.33 Total: -67.02 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.68 -10.82 -44.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319363371.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.019 kcal (2) G-P(sol) polarization free energy of solvation -33.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds