Wall clock time and date at job start Wed Apr 1 2020 04:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36086 * 126.30233 * 2 1 4 4 N 1.30069 * 110.13076 * 179.97438 * 3 2 1 5 5 C 1.35871 * 109.55698 * 0.02562 * 4 3 2 6 6 C 1.39404 * 133.52062 * 179.97438 * 5 4 3 7 7 C 1.39127 * 119.51059 * 179.97438 * 6 5 4 8 8 C 1.47685 * 119.90332 * 180.02562 * 7 6 5 9 9 O 1.21573 * 119.99663 * 359.97438 * 8 7 6 10 10 N 1.34770 * 119.99711 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99821 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47187 * 175.12439 * 11 10 8 13 13 N 1.46495 * 110.01671 * 303.90535 * 12 11 10 14 14 C 1.36938 * 120.00073 * 301.45485 * 13 12 11 15 15 H 1.07995 * 119.99999 * 354.61916 * 14 13 12 16 16 C 1.38814 * 119.99970 * 174.60469 * 14 13 12 17 17 N 1.31622 * 120.00006 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47097 * 90.00367 * 18 16 14 20 20 H 1.48500 * 109.47340 * 210.00339 * 18 16 14 21 21 H 1.48503 * 109.47230 * 330.00594 * 18 16 14 22 22 C 1.54268 * 110.02997 * 182.46029 * 12 11 10 23 23 C 1.54893 * 104.19077 * 217.10659 * 22 12 11 24 24 C 1.54886 * 102.75015 * 37.94604 * 23 22 12 25 25 C 1.53883 * 110.02870 * 65.29610 * 12 11 10 26 26 C 1.40135 * 120.19313 * 359.97438 * 7 6 5 27 27 C 1.36435 * 120.45579 * 0.02562 * 26 7 6 28 28 C 1.37797 * 126.30532 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47559 * 89.97715 * 1 2 3 30 30 H 1.09002 * 109.46859 * 209.97871 * 1 2 3 31 31 H 1.08999 * 109.46804 * 329.96923 * 1 2 3 32 32 H 1.07996 * 124.93731 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.24605 * 0.02562 * 6 5 4 34 34 H 0.96994 * 120.00323 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.47306 * 295.12809 * 11 10 8 36 36 H 1.08998 * 109.47040 * 55.12586 * 11 10 8 37 37 H 0.97002 * 120.00020 * 121.46554 * 13 12 11 38 38 H 0.96997 * 120.00223 * 179.97438 * 17 16 14 39 39 H 1.09001 * 110.48748 * 335.78169 * 22 12 11 40 40 H 1.09000 * 110.48509 * 98.43452 * 22 12 11 41 41 H 1.09000 * 110.75843 * 279.62388 * 23 22 12 42 42 H 1.09004 * 110.75177 * 156.25989 * 23 22 12 43 43 H 1.09007 * 110.48488 * 203.37186 * 24 23 22 44 44 H 1.09006 * 110.48522 * 80.73528 * 24 23 22 45 45 H 1.08999 * 110.02793 * 238.56717 * 25 12 11 46 46 H 1.09000 * 110.03386 * 359.97438 * 25 12 11 47 47 H 1.08003 * 119.77339 * 179.97438 * 26 7 6 48 48 H 1.08002 * 119.92190 * 179.72703 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2707 1.0967 0.0000 4 7 3.5199 0.7345 0.0005 5 6 3.6001 -0.6219 0.0004 6 6 4.6659 -1.5205 0.0003 7 6 4.4094 -2.8879 0.0006 8 6 5.5319 -3.8476 0.0011 9 8 6.6781 -3.4422 0.0007 10 7 5.2856 -5.1726 0.0020 11 6 6.3992 -6.1246 0.0019 12 6 5.8529 -7.5484 0.1256 13 7 5.0217 -7.6640 1.3263 14 6 5.5547 -7.3887 2.5572 15 1 6.6082 -7.1711 2.6530 16 6 4.7409 -7.3889 3.6818 17 7 3.4571 -7.6543 3.5650 18 14 5.4679 -7.0126 5.3608 19 1 5.3964 -5.5512 5.6149 20 1 4.6995 -7.7350 6.4062 21 1 6.8860 -7.4522 5.3961 22 6 7.0179 -8.5577 0.1888 23 6 6.5056 -9.7797 -0.6134 24 6 5.7206 -9.1213 -1.7750 25 6 5.0281 -7.9068 -1.1232 26 6 3.0890 -3.3572 0.0016 27 6 2.0435 -2.4807 0.0017 28 6 2.2809 -1.1105 -0.0005 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5143 32 1 1.9234 2.1193 0.0004 33 1 5.6832 -1.1578 0.0008 34 1 4.3712 -5.4959 0.0026 35 1 6.9584 -6.0296 -0.9289 36 1 7.0576 -5.9136 0.8445 37 1 4.0937 -7.9358 1.2494 38 1 2.8885 -7.6549 4.3509 39 1 7.9097 -8.1408 -0.2792 40 1 7.2237 -8.8385 1.2217 41 1 5.8461 -10.3948 -0.0012 42 1 7.3398 -10.3681 -0.9956 43 1 4.9798 -9.8135 -2.1753 44 1 6.4030 -8.7955 -2.5601 45 1 4.0096 -8.1676 -0.8356 46 1 5.0166 -7.0662 -1.8170 47 1 2.8976 -4.4202 0.0014 48 1 1.0292 -2.8519 -0.0020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319363371.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:28 Heat of formation + Delta-G solvation = 27.703694 kcal Electronic energy + Delta-G solvation = -29869.105436 eV Core-core repulsion = 25923.801598 eV Total energy + Delta-G solvation = -3945.303839 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.18622 -41.02503 -39.65506 -37.90075 -35.61014 -35.28741 -35.08175 -32.48387 -31.70353 -30.77454 -29.53677 -29.24108 -27.91416 -26.34919 -25.18662 -24.09706 -23.82928 -21.83300 -21.70559 -21.09698 -20.14420 -19.01886 -18.79398 -18.15718 -17.75517 -17.06445 -16.84544 -16.79434 -16.21229 -15.98837 -15.76289 -15.59960 -15.16814 -15.11825 -14.90179 -14.57523 -14.29451 -14.05956 -14.01258 -13.97916 -13.50585 -13.37646 -13.20368 -12.95089 -12.61974 -12.59465 -12.45062 -12.34197 -12.14863 -11.85695 -11.70251 -11.56728 -11.40918 -11.36150 -11.29582 -11.10952 -11.02017 -10.83212 -9.99650 -9.46323 -9.20395 -8.92600 -7.90090 -5.14258 -0.21915 0.02984 1.42311 1.46185 1.50581 1.66633 1.70674 1.95955 2.26968 2.57156 2.86125 3.24811 3.41720 3.56220 3.77643 3.79389 3.86133 3.91487 3.98054 3.98839 4.16712 4.23784 4.31901 4.38695 4.48431 4.50664 4.60643 4.62906 4.69731 4.76656 4.78484 4.89141 4.98225 5.03600 5.07653 5.16352 5.21692 5.24774 5.27936 5.29979 5.33384 5.42546 5.50162 5.59020 5.64271 5.66389 5.70610 6.16980 6.34503 6.63877 6.80001 7.26490 7.42410 8.15262 8.40649 9.32190 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.010541 B = 0.003298 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.750610 B = 8488.325548 C = 9661.992201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.491 5.491 3 C 0.275 3.725 4 N -0.539 5.539 5 C 0.009 3.991 6 C -0.020 4.020 7 C -0.151 4.151 8 C 0.553 3.447 9 O -0.593 6.593 10 N -0.687 5.687 11 C 0.125 3.875 12 C 0.185 3.815 13 N -0.712 5.712 14 C -0.213 4.213 15 H 0.060 0.940 16 C -0.059 4.059 17 N -0.956 5.956 18 Si 0.943 3.057 19 H -0.301 1.301 20 H -0.294 1.294 21 H -0.278 1.278 22 C -0.133 4.133 23 C -0.112 4.112 24 C -0.112 4.112 25 C -0.121 4.121 26 C -0.072 4.072 27 C -0.102 4.102 28 C 0.060 3.940 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.266 0.734 33 H 0.121 0.879 34 H 0.407 0.593 35 H 0.068 0.932 36 H 0.032 0.968 37 H 0.377 0.623 38 H 0.248 0.752 39 H 0.068 0.932 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.146 0.854 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.282 10.484 -13.670 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.180 5.180 3 C -0.011 4.011 4 N -0.258 5.258 5 C -0.108 4.108 6 C -0.041 4.041 7 C -0.156 4.156 8 C 0.341 3.659 9 O -0.476 6.476 10 N -0.336 5.336 11 C -0.001 4.001 12 C 0.094 3.906 13 N -0.353 5.353 14 C -0.345 4.345 15 H 0.078 0.922 16 C -0.252 4.252 17 N -0.607 5.607 18 Si 0.775 3.225 19 H -0.229 1.229 20 H -0.220 1.220 21 H -0.203 1.203 22 C -0.173 4.173 23 C -0.150 4.150 24 C -0.149 4.149 25 C -0.159 4.159 26 C -0.093 4.093 27 C -0.123 4.123 28 C -0.052 4.052 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.138 0.862 32 H 0.281 0.719 33 H 0.139 0.861 34 H 0.245 0.755 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.211 0.789 38 H 0.057 0.943 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.164 0.836 48 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.833 11.298 -13.531 19.716 hybrid contribution -0.588 -0.450 1.674 1.831 sum -9.421 10.847 -11.856 18.628 Atomic orbital electron populations 1.22423 0.72669 1.06677 1.05269 1.45626 1.09156 1.04189 1.59002 1.26375 0.83965 0.95160 0.95565 1.70437 1.21083 1.10386 1.23919 1.19006 0.92713 0.91020 1.08102 1.20264 0.98015 0.90603 0.95181 1.19568 0.93859 0.92736 1.09464 1.18455 0.88375 0.83111 0.75947 1.90691 1.23942 1.79610 1.53333 1.45573 1.11151 1.04530 1.72355 1.21844 0.88595 0.90015 0.99691 1.20725 0.91825 0.90608 0.87436 1.42594 1.11077 1.80750 1.00859 1.19202 0.92802 1.36690 0.85836 0.92206 1.25118 0.95979 1.04215 0.99900 1.69727 1.04217 1.58075 1.28714 0.85596 0.77755 0.76836 0.82349 1.22936 1.22034 1.20303 1.22784 0.97793 0.96726 0.99969 1.22351 0.99570 0.96525 0.96536 1.22292 0.99225 0.96180 0.97227 1.22396 0.99088 0.99159 0.95247 1.20903 0.90260 1.00737 0.97355 1.19852 1.00910 0.87971 1.03551 1.19196 0.91015 0.90654 1.04346 0.88856 0.89192 0.86189 0.71890 0.86117 0.75527 0.91347 0.94918 0.78874 0.94318 0.91327 0.93454 0.93104 0.90451 0.90562 0.90288 0.91560 0.90530 0.83619 0.82044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.37 11.17 127.77 1.43 1.80 16 2 N -0.49 -8.05 3.20 -543.49 -1.74 -9.79 16 3 C 0.27 4.68 12.50 180.05 2.25 6.93 16 4 N -0.54 -15.28 11.28 -192.09 -2.17 -17.45 16 5 C 0.01 0.28 7.22 39.40 0.28 0.56 16 6 C -0.02 -0.72 9.64 22.76 0.22 -0.50 16 7 C -0.15 -5.30 5.87 -20.11 -0.12 -5.42 16 8 C 0.55 22.30 7.76 86.74 0.67 22.98 16 9 O -0.59 -27.92 16.32 -3.95 -0.06 -27.98 16 10 N -0.69 -25.48 5.05 -466.13 -2.35 -27.84 16 11 C 0.12 4.72 3.99 86.38 0.34 5.07 16 12 C 0.18 6.57 0.68 4.33 0.00 6.58 16 13 N -0.71 -31.94 4.76 -300.07 -1.43 -33.37 16 14 C -0.21 -11.21 8.39 84.03 0.70 -10.50 16 15 H 0.06 3.24 7.23 -2.91 -0.02 3.22 16 16 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 17 N -0.96 -55.08 13.06 21.65 0.28 -54.80 16 18 Si 0.94 46.89 29.55 68.60 2.03 48.92 16 19 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 20 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 21 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 22 C -0.13 -4.47 5.94 31.67 0.19 -4.28 16 23 C -0.11 -3.10 6.91 31.89 0.22 -2.88 16 24 C -0.11 -2.62 6.83 31.67 0.22 -2.40 16 25 C -0.12 -3.38 5.80 31.32 0.18 -3.20 16 26 C -0.07 -2.06 9.47 22.31 0.21 -1.85 16 27 C -0.10 -2.41 9.97 22.05 0.22 -2.19 16 28 C 0.06 1.50 6.87 39.00 0.27 1.77 16 29 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.27 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.12 4.65 7.63 -2.91 -0.02 4.63 16 34 H 0.41 13.95 5.99 -92.71 -0.56 13.39 16 35 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.03 1.47 7.49 -2.39 -0.02 1.45 16 37 H 0.38 17.93 7.28 -92.71 -0.67 17.26 16 38 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 39 H 0.07 2.08 7.85 -2.39 -0.02 2.07 16 40 H 0.05 1.89 7.12 -2.39 -0.02 1.87 16 41 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 45 H 0.07 1.91 7.44 -2.39 -0.02 1.90 16 46 H 0.08 1.93 7.54 -2.39 -0.02 1.92 16 47 H 0.15 3.79 6.36 -2.91 -0.02 3.77 16 48 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -77.94 390.54 2.09 -75.85 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: -0.23 Total: 36.81 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 7.76 Total: 9.64 kcal Atomic # 7 Polarization: -135.84 SS G_CDS: -7.40 Total: -143.25 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.06 Total: -27.98 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -77.94 2.09 -75.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319363371.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.557 kcal (2) G-P(sol) polarization free energy of solvation -77.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds