Wall clock time and date at job start Wed Apr 1 2020 03:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42899 * 109.47113 * 2 1 4 4 C 1.42903 * 113.99629 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46726 * 180.02562 * 4 3 2 6 6 O 1.42899 * 109.47405 * 64.99720 * 5 4 3 7 7 C 1.42901 * 113.99649 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47440 * 329.99889 * 7 6 5 9 9 C 1.52998 * 109.46808 * 90.00772 * 7 6 5 10 10 C 1.50704 * 109.46932 * 209.99859 * 7 6 5 11 11 O 1.21281 * 119.99939 * 0.02562 * 10 7 6 12 12 N 1.34768 * 120.00286 * 180.02562 * 10 7 6 13 13 C 1.46498 * 120.00243 * 180.02562 * 12 10 7 14 14 H 1.08999 * 110.45383 * 327.59868 * 13 12 10 15 15 C 1.54547 * 110.51027 * 90.34929 * 13 12 10 16 16 O 1.44628 * 105.03442 * 95.01543 * 15 13 12 17 17 C 1.43241 * 105.22531 * 39.02898 * 16 15 13 18 18 C 1.52885 * 115.84114 * 90.92340 * 17 16 15 19 19 N 1.47780 * 85.78520 * 94.51048 * 18 17 16 20 20 C 1.36933 * 134.40654 * 203.87428 * 19 18 17 21 21 H 1.08002 * 120.00598 * 180.02562 * 20 19 18 22 22 C 1.38816 * 119.99847 * 359.97438 * 20 19 18 23 23 N 1.31619 * 119.99767 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99984 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46910 * 60.00268 * 24 22 20 26 26 H 1.48504 * 109.47062 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47283 * 300.00268 * 24 22 20 28 28 C 1.47790 * 91.19346 * 23.87464 * 19 18 17 29 29 C 1.53463 * 106.26037 * 321.06227 * 17 16 15 30 30 H 1.08997 * 109.46916 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46502 * 300.00085 * 1 2 3 32 32 H 1.08998 * 109.46733 * 60.00191 * 1 2 3 33 33 H 1.09007 * 109.46516 * 239.99933 * 2 1 3 34 34 H 1.09004 * 109.47113 * 120.00401 * 2 1 3 35 35 H 1.09002 * 109.47382 * 59.99956 * 4 3 2 36 36 H 1.09001 * 109.46938 * 299.99942 * 4 3 2 37 37 H 1.09002 * 109.46642 * 184.99995 * 5 4 3 38 38 H 1.09002 * 109.47069 * 304.99524 * 5 4 3 39 39 H 1.09003 * 109.47203 * 299.99168 * 9 7 6 40 40 H 1.08998 * 109.47841 * 59.99362 * 9 7 6 41 41 H 1.09004 * 109.47102 * 179.97438 * 9 7 6 42 42 H 0.97003 * 120.00042 * 0.02562 * 12 10 7 43 43 H 1.09004 * 110.32796 * 213.91020 * 15 13 12 44 44 H 1.09000 * 110.32483 * 336.12244 * 15 13 12 45 45 H 1.09001 * 113.82432 * 208.72933 * 18 17 16 46 46 H 1.09002 * 113.82411 * 340.29418 * 18 17 16 47 47 H 0.97001 * 119.99742 * 180.02562 * 23 22 20 48 48 H 1.09002 * 113.82035 * 221.91011 * 28 19 18 49 49 H 1.08997 * 113.93243 * 90.35282 * 28 19 18 50 50 H 1.09005 * 110.57604 * 264.15572 * 29 17 16 51 51 H 1.08997 * 110.70892 * 141.33658 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 8 3.3987 3.5447 1.2217 7 6 3.7206 4.9331 1.3247 8 1 4.6325 5.1374 0.7637 9 6 2.5722 5.7666 0.7525 10 6 3.9301 5.2941 2.7728 11 8 3.8156 4.4457 3.6319 12 7 4.2448 6.5595 3.1132 13 6 4.4490 6.9102 4.5208 14 1 3.8072 6.3052 5.1611 15 6 5.9332 6.7321 4.9134 16 8 6.5226 8.0435 4.7570 17 6 5.5295 8.9612 5.2298 18 6 5.6065 9.3202 6.7139 19 7 6.3976 10.4898 6.2780 20 6 7.3235 11.2988 6.8807 21 1 7.7698 12.1131 6.3291 22 6 7.6879 11.0729 8.2010 23 7 7.1437 10.0809 8.8733 24 14 8.9515 12.1761 9.0230 25 1 8.4609 13.5777 9.0210 26 1 9.1635 11.7283 10.4230 27 1 10.2343 12.0996 8.2787 28 6 5.7902 10.4377 4.9316 29 6 4.1776 8.4165 4.7492 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.8934 -0.5139 0.8900 35 1 3.8334 0.9766 -0.8908 36 1 3.8341 0.9763 0.8892 37 1 4.9083 3.0253 -0.0899 38 1 3.3493 3.4418 -0.8412 39 1 2.4205 5.5056 -0.2949 40 1 1.6602 5.5624 1.3135 41 1 2.8174 6.8257 0.8315 42 1 4.3360 7.2382 2.4261 43 1 6.0139 6.4016 5.9490 44 1 6.4176 6.0173 4.2482 45 1 4.6439 9.5792 7.1547 46 1 6.1714 8.6045 7.3112 47 1 7.3980 9.9233 9.7960 48 1 6.5003 10.6046 4.1216 49 1 4.8830 11.0337 4.8325 50 1 3.8801 8.8976 3.8175 51 1 3.4123 8.5563 5.5126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327425535.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:11 Heat of formation + Delta-G solvation = -108.287049 kcal Electronic energy + Delta-G solvation = -30217.927332 eV Core-core repulsion = 25927.124822 eV Total energy + Delta-G solvation = -4290.802511 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.47519 -39.52320 -38.58239 -37.48065 -36.08177 -34.35888 -32.72168 -32.07141 -31.60959 -30.10416 -29.13357 -28.01078 -25.86666 -24.98203 -24.69265 -23.13736 -22.90492 -22.14505 -21.12131 -20.46980 -18.98442 -17.60074 -17.52231 -17.16981 -16.71230 -16.48683 -16.09281 -15.47362 -15.31957 -15.14953 -15.10494 -14.64710 -14.55046 -14.14228 -13.88447 -13.70598 -13.39124 -13.10152 -12.98794 -12.96105 -12.75528 -12.64469 -12.57582 -12.00842 -11.84129 -11.76752 -11.58331 -11.53667 -11.44226 -11.24579 -11.19475 -11.08078 -10.81639 -10.53570 -10.37133 -10.18086 -9.95947 -9.77220 -9.57668 -9.50728 -9.25157 -8.80228 -8.70533 -6.85817 -5.72455 -3.04464 2.50990 2.66984 3.28965 3.42922 3.46537 3.48112 3.60848 4.26561 4.41955 4.48994 4.56407 4.61846 4.66735 4.69063 4.76084 4.80048 4.86769 4.97762 5.00550 5.04906 5.05366 5.18861 5.20573 5.26421 5.32625 5.35184 5.38061 5.43370 5.51464 5.55939 5.64033 5.76977 5.79079 5.84969 5.98557 6.03415 6.06696 6.34476 6.46521 6.48487 6.60961 6.73165 6.87526 6.97435 7.22227 7.41527 7.50955 7.68796 8.01423 8.14531 9.07731 9.74419 10.61084 11.44845 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.033686 B = 0.001731 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.014466 B =16173.530998 C =16336.395042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.065 3.935 5 C 0.061 3.939 6 O -0.348 6.348 7 C 0.070 3.930 8 H 0.087 0.913 9 C -0.169 4.169 10 C 0.513 3.487 11 O -0.519 6.519 12 N -0.715 5.715 13 C 0.113 3.887 14 H 0.103 0.897 15 C 0.038 3.962 16 O -0.337 6.337 17 C 0.055 3.945 18 C 0.152 3.848 19 N -0.605 5.605 20 C -0.221 4.221 21 H 0.079 0.921 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.913 3.087 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.130 3.870 29 C -0.145 4.145 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.401 0.599 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.036 0.964 46 H 0.078 0.922 47 H 0.254 0.746 48 H 0.051 0.949 49 H 0.047 0.953 50 H 0.079 0.921 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.561 -16.301 -21.999 29.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.012 4.012 5 C -0.016 4.016 6 O -0.265 6.265 7 C 0.009 3.991 8 H 0.105 0.895 9 C -0.227 4.227 10 C 0.298 3.702 11 O -0.393 6.393 12 N -0.369 5.369 13 C 0.009 3.991 14 H 0.121 0.879 15 C -0.040 4.040 16 O -0.256 6.256 17 C 0.014 3.986 18 C 0.026 3.974 19 N -0.331 5.331 20 C -0.349 4.349 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.743 3.257 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.004 3.996 29 C -0.184 4.184 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.236 0.764 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.053 0.947 46 H 0.096 0.904 47 H 0.064 0.936 48 H 0.069 0.931 49 H 0.064 0.936 50 H 0.097 0.903 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.437 -16.716 -21.020 29.190 hybrid contribution 0.837 0.776 0.055 1.143 sum -10.600 -15.939 -20.965 28.389 Atomic orbital electron populations 1.21736 0.93694 1.02166 1.03261 1.22462 0.95760 0.83845 0.99936 1.87965 1.20426 1.26245 1.95390 1.22488 0.82322 0.95353 1.00999 1.22642 0.98369 0.92835 0.87714 1.88127 1.80073 1.20704 1.37643 1.21895 0.99104 0.84100 0.94004 0.89548 1.22228 0.98992 0.99484 1.02015 1.20375 0.76775 0.82571 0.90500 1.90735 1.49300 1.48270 1.51038 1.46049 1.71561 1.10248 1.09030 1.22455 0.97892 0.96780 0.82012 0.87856 1.23803 0.91754 0.86982 1.01479 1.89008 1.38362 1.14447 1.83739 1.23780 0.84873 0.91410 0.98537 1.22608 0.94316 0.89751 0.90708 1.45823 1.44354 1.34521 1.08370 1.18946 1.13494 1.08029 0.94424 0.90272 1.24769 1.00289 0.98844 0.96495 1.69800 1.45718 1.31254 1.10131 0.86192 0.81196 0.79759 0.78550 1.21224 1.21570 1.21087 1.22495 0.96272 0.90079 0.90742 1.23068 0.99678 0.93040 1.02620 0.91170 0.91627 0.91958 0.93628 0.93291 0.91784 0.92138 0.91552 0.92214 0.91222 0.90946 0.90929 0.76414 0.91168 0.89588 0.94669 0.90385 0.93617 0.93051 0.93560 0.90271 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.42 6.66 37.16 0.25 0.66 16 3 O -0.38 -3.84 10.31 -40.09 -0.41 -4.26 16 4 C 0.07 0.52 6.32 37.16 0.23 0.75 16 5 C 0.06 0.49 6.13 37.16 0.23 0.72 16 6 O -0.35 -4.11 9.49 -59.73 -0.57 -4.67 16 7 C 0.07 0.68 3.14 -27.88 -0.09 0.59 16 8 H 0.09 0.61 7.79 -51.93 -0.40 0.21 16 9 C -0.17 -1.26 9.42 37.16 0.35 -0.91 16 10 C 0.51 6.58 7.23 -10.99 -0.08 6.50 16 11 O -0.52 -9.03 16.15 -14.35 -0.23 -9.26 16 12 N -0.72 -8.05 4.98 -52.13 -0.26 -8.31 16 13 C 0.11 1.55 3.49 -66.20 -0.23 1.32 16 14 H 0.10 1.49 7.55 -51.93 -0.39 1.10 16 15 C 0.04 0.62 7.37 37.97 0.28 0.90 16 16 O -0.34 -6.66 11.44 -35.23 -0.40 -7.06 16 17 C 0.06 1.04 1.28 -90.66 -0.12 0.92 16 18 C 0.15 3.59 6.99 -3.40 -0.02 3.57 16 19 N -0.60 -15.81 3.71 -183.59 -0.68 -16.49 16 20 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 21 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -27.84 11.40 55.49 0.63 -27.21 16 24 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 28 C 0.13 2.65 8.47 -3.40 -0.03 2.63 16 29 C -0.14 -2.01 6.24 -25.57 -0.16 -2.17 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 38 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 39 H 0.07 0.43 7.87 -51.93 -0.41 0.03 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.41 7.56 -51.93 -0.39 0.01 16 42 H 0.40 3.46 7.81 -40.82 -0.32 3.14 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.09 1.31 8.06 -51.93 -0.42 0.89 16 45 H 0.04 0.82 7.96 -51.93 -0.41 0.41 16 46 H 0.08 2.09 7.20 -51.93 -0.37 1.72 16 47 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.08 0.91 7.69 -51.93 -0.40 0.51 16 51 H 0.09 1.20 7.84 -51.93 -0.41 0.79 16 LS Contribution 416.54 15.07 6.28 6.28 Total: -1.00 -36.96 416.54 -8.88 -45.84 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -8.95 Total: -0.44 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 0.74 Total: 8.06 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.31 Total: -52.01 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -1.61 Total: -25.25 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -36.96 -8.88 -45.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327425535.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.443 kcal (2) G-P(sol) polarization free energy of solvation -36.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds