Wall clock time and date at job start Wed Apr 1 2020 03:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42899 * 109.47113 * 2 1 4 4 C 1.42903 * 113.99629 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46726 * 180.02562 * 4 3 2 6 6 O 1.42899 * 109.47405 * 64.99720 * 5 4 3 7 7 C 1.42901 * 113.99649 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47440 * 329.99889 * 7 6 5 9 9 C 1.52998 * 109.46808 * 90.00772 * 7 6 5 10 10 C 1.50704 * 109.46932 * 209.99859 * 7 6 5 11 11 O 1.21281 * 119.99939 * 0.02562 * 10 7 6 12 12 N 1.34768 * 120.00286 * 180.02562 * 10 7 6 13 13 C 1.46498 * 120.00243 * 180.02562 * 12 10 7 14 14 H 1.08999 * 110.45383 * 327.59868 * 13 12 10 15 15 C 1.54547 * 110.51027 * 90.34929 * 13 12 10 16 16 O 1.44628 * 105.03442 * 95.01543 * 15 13 12 17 17 C 1.43241 * 105.22531 * 39.02898 * 16 15 13 18 18 C 1.52885 * 115.84114 * 90.92340 * 17 16 15 19 19 N 1.47780 * 85.78520 * 94.51048 * 18 17 16 20 20 C 1.36933 * 134.40654 * 203.87428 * 19 18 17 21 21 H 1.08002 * 120.00598 * 180.02562 * 20 19 18 22 22 C 1.38816 * 119.99847 * 359.97438 * 20 19 18 23 23 N 1.31619 * 119.99767 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99984 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46910 * 60.00268 * 24 22 20 26 26 H 1.48504 * 109.47062 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47283 * 300.00268 * 24 22 20 28 28 C 1.47790 * 91.19346 * 23.87464 * 19 18 17 29 29 C 1.53463 * 106.26037 * 321.06227 * 17 16 15 30 30 H 1.08997 * 109.46916 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46502 * 300.00085 * 1 2 3 32 32 H 1.08998 * 109.46733 * 60.00191 * 1 2 3 33 33 H 1.09007 * 109.46516 * 239.99933 * 2 1 3 34 34 H 1.09004 * 109.47113 * 120.00401 * 2 1 3 35 35 H 1.09002 * 109.47382 * 59.99956 * 4 3 2 36 36 H 1.09001 * 109.46938 * 299.99942 * 4 3 2 37 37 H 1.09002 * 109.46642 * 184.99995 * 5 4 3 38 38 H 1.09002 * 109.47069 * 304.99524 * 5 4 3 39 39 H 1.09003 * 109.47203 * 299.99168 * 9 7 6 40 40 H 1.08998 * 109.47841 * 59.99362 * 9 7 6 41 41 H 1.09004 * 109.47102 * 179.97438 * 9 7 6 42 42 H 0.97003 * 120.00042 * 0.02562 * 12 10 7 43 43 H 1.09004 * 110.32796 * 213.91020 * 15 13 12 44 44 H 1.09000 * 110.32483 * 336.12244 * 15 13 12 45 45 H 1.09001 * 113.82432 * 208.72933 * 18 17 16 46 46 H 1.09002 * 113.82411 * 340.29418 * 18 17 16 47 47 H 0.97001 * 119.99742 * 180.02562 * 23 22 20 48 48 H 1.09002 * 113.82035 * 221.91011 * 28 19 18 49 49 H 1.08997 * 113.93243 * 90.35282 * 28 19 18 50 50 H 1.09005 * 110.57604 * 264.15572 * 29 17 16 51 51 H 1.08997 * 110.70892 * 141.33658 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 8 3.3987 3.5447 1.2217 7 6 3.7206 4.9331 1.3247 8 1 4.6325 5.1374 0.7637 9 6 2.5722 5.7666 0.7525 10 6 3.9301 5.2941 2.7728 11 8 3.8156 4.4457 3.6319 12 7 4.2448 6.5595 3.1132 13 6 4.4490 6.9102 4.5208 14 1 3.8072 6.3052 5.1611 15 6 5.9332 6.7321 4.9134 16 8 6.5226 8.0435 4.7570 17 6 5.5295 8.9612 5.2298 18 6 5.6065 9.3202 6.7139 19 7 6.3976 10.4898 6.2780 20 6 7.3235 11.2988 6.8807 21 1 7.7698 12.1131 6.3291 22 6 7.6879 11.0729 8.2010 23 7 7.1437 10.0809 8.8733 24 14 8.9515 12.1761 9.0230 25 1 8.4609 13.5777 9.0210 26 1 9.1635 11.7283 10.4230 27 1 10.2343 12.0996 8.2787 28 6 5.7902 10.4377 4.9316 29 6 4.1776 8.4165 4.7492 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.8934 -0.5139 0.8900 35 1 3.8334 0.9766 -0.8908 36 1 3.8341 0.9763 0.8892 37 1 4.9083 3.0253 -0.0899 38 1 3.3493 3.4418 -0.8412 39 1 2.4205 5.5056 -0.2949 40 1 1.6602 5.5624 1.3135 41 1 2.8174 6.8257 0.8315 42 1 4.3360 7.2382 2.4261 43 1 6.0139 6.4016 5.9490 44 1 6.4176 6.0173 4.2482 45 1 4.6439 9.5792 7.1547 46 1 6.1714 8.6045 7.3112 47 1 7.3980 9.9233 9.7960 48 1 6.5003 10.6046 4.1216 49 1 4.8830 11.0337 4.8325 50 1 3.8801 8.8976 3.8175 51 1 3.4123 8.5563 5.5126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327425535.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:10 Heat of formation + Delta-G solvation = -135.748937 kcal Electronic energy + Delta-G solvation = -30219.118169 eV Core-core repulsion = 25927.124822 eV Total energy + Delta-G solvation = -4291.993347 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.71517 -40.69827 -39.32484 -38.28668 -37.63948 -35.57723 -34.12896 -33.41531 -32.34250 -31.22494 -29.87825 -29.55185 -27.57889 -26.63837 -25.56986 -23.93205 -23.67322 -23.45210 -22.33823 -21.50550 -20.54906 -18.76224 -18.44691 -18.25925 -17.79681 -17.57239 -17.04993 -16.78445 -16.66665 -16.40320 -16.02073 -15.97178 -15.54929 -15.43006 -15.09854 -14.84947 -14.57155 -14.46528 -14.37640 -13.70751 -13.56448 -13.32156 -13.27537 -13.18639 -13.12401 -12.95215 -12.82565 -12.69897 -12.62296 -12.50455 -12.33179 -12.29984 -12.16489 -12.00192 -11.83342 -11.66827 -11.29364 -10.98231 -10.91008 -10.66288 -10.57115 -10.44530 -10.01604 -8.91702 -7.89402 -5.22181 1.44127 1.48387 1.54242 1.54444 1.80768 2.47555 2.75209 2.84089 2.89444 3.28786 3.42095 3.53581 3.64373 3.72916 3.83493 3.94574 4.03065 4.07935 4.14414 4.15853 4.24908 4.32231 4.34298 4.46498 4.49895 4.54126 4.57279 4.66492 4.66922 4.75196 4.80295 4.81170 4.85755 4.88587 4.91374 4.95114 4.96122 5.03747 5.18556 5.25189 5.26575 5.29268 5.44675 5.51433 5.93201 6.07790 6.12669 6.30375 6.55560 6.91763 7.21407 7.61538 8.55647 9.27460 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.033686 B = 0.001731 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.014466 B =16173.530998 C =16336.395042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.408 6.408 4 C 0.059 3.941 5 C 0.055 3.945 6 O -0.385 6.385 7 C 0.072 3.928 8 H 0.119 0.881 9 C -0.164 4.164 10 C 0.510 3.490 11 O -0.573 6.573 12 N -0.699 5.699 13 C 0.125 3.875 14 H 0.096 0.904 15 C 0.036 3.964 16 O -0.362 6.362 17 C 0.074 3.926 18 C 0.145 3.855 19 N -0.641 5.641 20 C -0.233 4.233 21 H 0.085 0.915 22 C -0.071 4.071 23 N -0.956 5.956 24 Si 0.980 3.020 25 H -0.274 1.274 26 H -0.295 1.295 27 H -0.278 1.278 28 C 0.132 3.868 29 C -0.129 4.129 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.096 0.904 42 H 0.418 0.582 43 H 0.052 0.948 44 H 0.095 0.905 45 H 0.035 0.965 46 H 0.034 0.966 47 H 0.247 0.753 48 H 0.057 0.943 49 H 0.080 0.920 50 H 0.118 0.882 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.114 -15.591 -25.166 31.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.329 6.329 4 C -0.017 4.017 5 C -0.021 4.021 6 O -0.304 6.304 7 C 0.011 3.989 8 H 0.136 0.864 9 C -0.221 4.221 10 C 0.297 3.703 11 O -0.451 6.451 12 N -0.353 5.353 13 C 0.020 3.980 14 H 0.114 0.886 15 C -0.042 4.042 16 O -0.280 6.280 17 C 0.033 3.967 18 C 0.019 3.981 19 N -0.367 5.367 20 C -0.362 4.362 21 H 0.102 0.898 22 C -0.263 4.263 23 N -0.605 5.605 24 Si 0.808 3.192 25 H -0.199 1.199 26 H -0.221 1.221 27 H -0.204 1.204 28 C 0.008 3.992 29 C -0.167 4.167 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.111 0.889 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.115 0.885 42 H 0.257 0.743 43 H 0.070 0.930 44 H 0.113 0.887 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.056 0.944 48 H 0.075 0.925 49 H 0.097 0.903 50 H 0.136 0.864 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.003 -15.975 -24.265 31.434 hybrid contribution 1.028 0.498 0.986 1.509 sum -10.975 -15.477 -23.280 30.032 Atomic orbital electron populations 1.21759 0.93276 1.03242 1.02465 1.22634 0.96223 0.83090 1.00710 1.87927 1.21637 1.27729 1.95568 1.22666 0.81549 0.95804 1.01687 1.22885 0.99748 0.92616 0.86812 1.88089 1.80738 1.21927 1.39652 1.22029 1.01379 0.83762 0.91685 0.86381 1.22223 0.97104 1.00451 1.02345 1.21098 0.75360 0.82113 0.91693 1.90716 1.51699 1.49833 1.52826 1.45861 1.70659 1.10479 1.08327 1.22145 0.95668 0.96761 0.83466 0.88611 1.23885 0.93690 0.85754 1.00889 1.88981 1.39807 1.15849 1.83401 1.23399 0.87443 0.91204 0.94681 1.22581 0.93214 0.88658 0.93644 1.46247 1.44735 1.34850 1.10889 1.19391 1.13886 1.08085 0.94813 0.89767 1.25648 1.02751 1.00553 0.97385 1.70013 1.47464 1.33130 1.09897 0.85134 0.78845 0.78310 0.76943 1.19941 1.22149 1.20422 1.22739 0.97062 0.91271 0.88125 1.22974 0.96573 0.92593 1.04581 0.89196 0.93204 0.91898 0.91684 0.93612 0.88922 0.93522 0.89484 0.90760 0.89644 0.92984 0.88521 0.74321 0.92977 0.88694 0.94694 0.94787 0.94421 0.92473 0.90271 0.86394 0.88185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.28 71.99 0.74 -1.10 16 2 C 0.05 0.69 6.66 71.99 0.48 1.17 16 3 O -0.41 -7.98 10.31 -144.34 -1.49 -9.47 16 4 C 0.06 0.88 6.32 71.98 0.45 1.33 16 5 C 0.06 0.78 6.13 71.98 0.44 1.22 16 6 O -0.39 -8.65 9.49 -125.55 -1.19 -9.85 16 7 C 0.07 1.21 3.14 29.85 0.09 1.31 16 8 H 0.12 1.21 7.79 -2.39 -0.02 1.19 16 9 C -0.16 -1.94 9.42 71.98 0.68 -1.26 16 10 C 0.51 12.31 7.23 87.66 0.63 12.94 16 11 O -0.57 -20.01 16.15 16.00 0.26 -19.75 16 12 N -0.70 -13.88 4.98 -437.24 -2.18 -16.05 16 13 C 0.13 3.24 3.49 46.11 0.16 3.40 16 14 H 0.10 2.71 7.55 -2.39 -0.02 2.70 16 15 C 0.04 1.15 7.37 72.51 0.53 1.69 16 16 O -0.36 -14.09 11.44 -148.98 -1.70 -15.79 16 17 C 0.07 2.70 1.28 -10.66 -0.01 2.68 16 18 C 0.14 7.00 6.99 86.09 0.60 7.60 16 19 N -0.64 -33.63 3.71 -741.02 -2.75 -36.38 16 20 C -0.23 -13.51 10.70 84.04 0.90 -12.61 16 21 H 0.08 4.62 7.83 -2.91 -0.02 4.59 16 22 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 23 N -0.96 -59.79 11.40 21.65 0.25 -59.55 16 24 Si 0.98 47.07 29.55 68.60 2.03 49.10 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 27 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 28 C 0.13 5.13 8.47 86.09 0.73 5.86 16 29 C -0.13 -3.19 6.24 31.34 0.20 -2.99 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 0.82 8.08 -2.39 -0.02 0.80 16 38 H 0.07 0.80 7.87 -2.39 -0.02 0.78 16 39 H 0.08 0.77 7.87 -2.39 -0.02 0.75 16 40 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.10 0.65 7.56 -2.39 -0.02 0.63 16 42 H 0.42 5.43 7.81 -92.71 -0.72 4.71 16 43 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 44 H 0.09 2.86 8.06 -2.39 -0.02 2.84 16 45 H 0.04 1.67 7.96 -2.39 -0.02 1.65 16 46 H 0.03 1.92 7.20 -2.39 -0.02 1.90 16 47 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 48 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 50 H 0.12 2.08 7.69 -2.38 -0.02 2.07 16 51 H 0.10 2.38 7.84 -2.39 -0.02 2.36 16 Total: -1.00 -84.73 416.54 0.51 -84.22 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.19 Total: 15.97 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 7.10 Total: 17.54 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -4.67 Total: -111.98 kcal Atomic # 8 Polarization: -50.73 SS G_CDS: -4.12 Total: -54.85 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -84.73 0.51 -84.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327425535.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.526 kcal (2) G-P(sol) polarization free energy of solvation -84.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds