Wall clock time and date at job start Wed Apr 1 2020 01:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 109.47445 * 2 1 4 4 C 1.46498 * 120.00411 * 265.67962 * 3 2 1 5 5 C 1.53008 * 109.47110 * 274.03483 * 4 3 2 6 6 O 1.42898 * 109.46992 * 64.94025 * 5 4 3 7 7 C 1.42901 * 113.99516 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.46869 * 180.02562 * 7 6 5 9 9 O 1.42902 * 109.47237 * 64.99957 * 8 7 6 10 10 C 1.34776 * 119.99912 * 85.67935 * 3 2 1 11 11 O 1.21348 * 120.00189 * 184.98062 * 10 3 2 12 12 C 1.49448 * 120.00114 * 4.97743 * 10 3 2 13 13 O 1.21348 * 120.00322 * 274.11390 * 12 10 3 14 14 N 1.34779 * 119.99874 * 94.11211 * 12 10 3 15 15 C 1.46916 * 120.63183 * 5.04605 * 14 12 10 16 16 C 1.53200 * 108.77609 * 233.58735 * 15 14 12 17 17 C 1.53038 * 109.31137 * 305.36412 * 16 15 14 18 18 C 1.53043 * 109.53756 * 61.36433 * 17 16 15 19 19 H 1.09001 * 109.49450 * 58.58834 * 18 17 16 20 20 C 1.50700 * 109.49558 * 178.68406 * 18 17 16 21 21 H 1.08002 * 120.00567 * 359.97438 * 20 18 17 22 22 C 1.37885 * 119.99922 * 180.02562 * 20 18 17 23 23 N 1.31520 * 119.99851 * 359.97438 * 22 20 18 24 24 Si 1.86795 * 120.00039 * 180.02562 * 22 20 18 25 25 H 1.48491 * 109.47312 * 59.99684 * 24 22 20 26 26 H 1.48502 * 109.46978 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46973 * 299.99432 * 24 22 20 28 28 C 1.46930 * 120.62839 * 184.76988 * 14 12 10 29 29 H 1.08998 * 109.46874 * 305.06947 * 1 2 3 30 30 H 1.09003 * 109.46558 * 65.06522 * 1 2 3 31 31 H 1.08990 * 109.47316 * 185.06645 * 1 2 3 32 32 H 1.09006 * 109.46714 * 239.99715 * 2 1 3 33 33 H 1.09003 * 109.46876 * 120.00141 * 2 1 3 34 34 H 1.08996 * 109.47712 * 154.02858 * 4 3 2 35 35 H 1.09005 * 109.46960 * 34.02557 * 4 3 2 36 36 H 1.09000 * 109.46810 * 304.94176 * 5 4 3 37 37 H 1.08998 * 109.46856 * 184.94198 * 5 4 3 38 38 H 1.09001 * 109.47510 * 59.99962 * 7 6 5 39 39 H 1.09008 * 109.47064 * 299.99715 * 7 6 5 40 40 H 1.09004 * 109.46834 * 184.99737 * 8 7 6 41 41 H 1.08991 * 109.47039 * 304.99657 * 8 7 6 42 42 H 0.96700 * 113.99979 * 180.02562 * 9 8 7 43 43 H 1.09001 * 109.58804 * 353.37118 * 15 14 12 44 44 H 1.09002 * 109.58861 * 113.65799 * 15 14 12 45 45 H 1.08998 * 109.49578 * 65.31419 * 16 15 14 46 46 H 1.08993 * 109.49574 * 185.41394 * 16 15 14 47 47 H 1.09000 * 109.46131 * 181.38617 * 17 16 15 48 48 H 1.08997 * 109.46045 * 301.36041 * 17 16 15 49 49 H 0.96994 * 119.99997 * 180.02562 * 23 22 20 50 50 H 1.09006 * 109.58201 * 246.20374 * 28 14 12 51 51 H 1.09001 * 109.58579 * 6.61982 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3528 2.0399 -1.2651 5 6 3.7963 1.7068 -1.6477 6 8 3.9089 0.3062 -1.9081 7 6 5.2248 -0.1126 -2.2756 8 6 5.2273 -1.6213 -2.5300 9 8 4.4070 -1.9148 -3.6627 10 6 2.1602 2.0458 1.1639 11 8 2.4777 3.2169 1.1591 12 6 1.9263 1.3404 2.4605 13 8 0.8042 1.2645 2.9162 14 7 2.9617 0.7884 3.1237 15 6 4.3386 0.9659 2.6430 16 6 4.9905 -0.4125 2.4943 17 6 4.8801 -1.1702 3.8194 18 6 3.4046 -1.3693 4.1737 19 1 2.9099 -1.9213 3.3745 20 6 3.2968 -2.1436 5.4621 21 1 4.1910 -2.4625 5.9770 22 6 2.0565 -2.4459 5.9830 23 7 0.9675 -2.0580 5.3558 24 14 1.9229 -3.4050 7.5804 25 1 2.5948 -2.6505 8.6685 26 1 0.4910 -3.5991 7.9229 27 1 2.5765 -4.7287 7.4191 28 6 2.7353 0.0028 4.3445 29 1 -0.3633 0.5905 0.8411 30 1 -0.3632 0.4333 -0.9319 31 1 -0.3633 -1.0235 0.0907 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.2466 3.1188 -1.1521 35 1 1.6794 1.6884 -2.0468 36 1 4.4614 1.9785 -0.8280 37 1 4.0736 2.2660 -2.5412 38 1 5.9192 0.1214 -1.4687 39 1 5.5321 0.4089 -3.1822 40 1 6.2467 -1.9554 -2.7233 41 1 4.8356 -2.1381 -1.6540 42 1 4.3618 -2.8554 -3.8824 43 1 4.3262 1.4703 1.6768 44 1 4.9018 1.5633 3.3600 45 1 4.4807 -0.9734 1.7110 46 1 6.0412 -0.2915 2.2309 47 1 5.3649 -2.1417 3.7237 48 1 5.3683 -0.5968 4.6073 49 1 0.0950 -2.2703 5.7224 50 1 3.1711 0.5213 5.1987 51 1 1.6646 -0.1282 4.5014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330415987.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:38 Heat of formation + Delta-G solvation = -166.619185 kcal Electronic energy + Delta-G solvation = -32854.923785 eV Core-core repulsion = 28561.591804 eV Total energy + Delta-G solvation = -4293.331982 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.59733 -38.76480 -38.14327 -36.78447 -36.63357 -35.79639 -33.42079 -31.87572 -31.71600 -29.98334 -29.84961 -28.59198 -25.90947 -25.07942 -23.69616 -23.32652 -22.67656 -21.92688 -21.40014 -19.35379 -18.35415 -17.89071 -17.48651 -17.04842 -16.67606 -16.30585 -15.96540 -15.82243 -15.01073 -14.92144 -14.63168 -14.43006 -14.17815 -14.00512 -13.78216 -13.62289 -13.44390 -13.21452 -12.85683 -12.78216 -12.68155 -12.23250 -12.21254 -12.10224 -11.97802 -11.85423 -11.59965 -11.23447 -11.07010 -11.04737 -10.95031 -10.66675 -10.57702 -10.44460 -10.31063 -10.29994 -9.98630 -9.81591 -9.26828 -9.20236 -8.87799 -8.71997 -8.48944 -7.90782 -6.05523 -4.13955 2.40461 2.55875 3.14546 3.29350 3.35902 3.36746 3.44686 3.75012 3.98995 4.38805 4.54208 4.76615 4.90455 4.92711 4.97929 5.10525 5.16869 5.21365 5.23531 5.26024 5.27580 5.40508 5.44390 5.49898 5.52660 5.60169 5.66093 5.71470 5.92201 5.95221 6.06755 6.09935 6.23339 6.41621 6.49763 6.55802 6.57728 6.76551 6.88221 6.95886 7.02416 7.11459 7.26467 7.37269 7.52647 7.76852 7.88949 7.99868 8.05466 8.29721 8.53523 8.89449 9.52026 11.00106 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011456 B = 0.003749 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.587995 B = 7467.716351 C = 8335.195909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 N -0.591 5.591 4 C 0.116 3.884 5 C 0.046 3.954 6 O -0.374 6.374 7 C 0.063 3.937 8 C 0.077 3.923 9 O -0.568 6.568 10 C 0.518 3.482 11 O -0.530 6.530 12 C 0.508 3.492 13 O -0.510 6.510 14 N -0.587 5.587 15 C 0.110 3.890 16 C -0.130 4.130 17 C -0.111 4.111 18 C 0.044 3.956 19 H 0.030 0.970 20 C -0.522 4.522 21 H 0.058 0.942 22 C 0.064 3.936 23 N -0.881 5.881 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.111 3.889 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.379 0.621 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.053 0.947 48 H 0.051 0.949 49 H 0.265 0.735 50 H 0.047 0.953 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.401 2.787 -17.228 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.017 4.017 3 N -0.325 5.325 4 C -0.007 4.007 5 C -0.031 4.031 6 O -0.293 6.293 7 C -0.014 4.014 8 C -0.001 4.001 9 O -0.373 6.373 10 C 0.302 3.698 11 O -0.406 6.406 12 C 0.289 3.711 13 O -0.385 6.385 14 N -0.321 5.321 15 C -0.014 4.014 16 C -0.168 4.168 17 C -0.149 4.149 18 C 0.024 3.976 19 H 0.048 0.952 20 C -0.561 4.561 21 H 0.077 0.923 22 C -0.139 4.139 23 N -0.518 5.518 24 Si 0.721 3.279 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.203 1.203 28 C -0.008 4.008 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.075 0.925 50 H 0.066 0.934 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.511 3.887 -16.922 18.918 hybrid contribution 0.333 -0.924 0.844 1.295 sum 7.844 2.963 -16.079 18.134 Atomic orbital electron populations 1.22225 0.95367 1.03048 1.02416 1.21718 0.94747 0.80865 1.04341 1.47961 1.64428 1.14952 1.05205 1.21567 0.94435 0.99252 0.85452 1.22973 0.97926 0.82655 0.99578 1.87960 1.28781 1.23272 1.89272 1.22511 0.85510 0.94323 0.99038 1.22196 0.93981 0.94773 0.89129 1.86535 1.71537 1.30250 1.48969 1.20790 0.76327 0.87249 0.85443 1.90726 1.47156 1.15556 1.87114 1.19954 0.86046 0.79738 0.85332 1.90801 1.22316 1.57451 1.67957 1.48550 1.05187 1.50149 1.28240 1.21673 0.83127 0.97784 0.98807 1.21931 0.99160 0.95645 1.00113 1.21645 1.00408 0.98574 0.94278 1.19032 0.89380 0.91764 0.97384 0.95151 1.21023 0.92336 1.35179 1.07535 0.92330 1.25041 0.95920 0.95598 0.97322 1.69854 0.97762 1.45315 1.38844 0.86642 0.77029 0.80433 0.83816 1.20227 1.21236 1.20287 1.22560 1.06480 0.90718 0.81060 0.91208 0.92874 0.91205 0.88649 0.90112 0.87957 0.89335 0.92917 0.92255 0.91896 0.92878 0.92319 0.92347 0.77458 0.91779 0.91407 0.91994 0.92160 0.92811 0.93038 0.92501 0.93447 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 10.21 37.16 0.38 -2.09 16 2 C 0.11 1.53 5.72 -4.04 -0.02 1.50 16 3 N -0.59 -8.69 2.46 -174.19 -0.43 -9.12 16 4 C 0.12 1.33 5.91 -4.04 -0.02 1.30 16 5 C 0.05 0.48 6.28 37.16 0.23 0.71 16 6 O -0.37 -4.23 8.83 -40.08 -0.35 -4.58 16 7 C 0.06 0.57 6.32 37.16 0.23 0.80 16 8 C 0.08 0.63 7.43 37.16 0.28 0.91 16 9 O -0.57 -5.28 13.62 -40.08 -0.55 -5.83 16 10 C 0.52 9.43 5.43 -11.59 -0.06 9.37 16 11 O -0.53 -10.41 16.58 5.50 0.09 -10.31 16 12 C 0.51 10.73 5.68 -11.58 -0.07 10.67 16 13 O -0.51 -12.51 15.51 5.50 0.09 -12.43 16 14 N -0.59 -11.92 2.97 -173.01 -0.51 -12.43 16 15 C 0.11 1.80 6.35 -3.71 -0.02 1.77 16 16 C -0.13 -2.00 6.08 -26.61 -0.16 -2.17 16 17 C -0.11 -2.09 5.10 -26.69 -0.14 -2.23 16 18 C 0.04 1.02 2.26 -91.43 -0.21 0.81 16 19 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 20 C -0.52 -13.57 8.56 -34.44 -0.29 -13.86 16 21 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 22 C 0.06 1.72 5.30 -17.81 -0.09 1.62 16 23 N -0.88 -24.70 11.41 55.43 0.63 -24.07 16 24 Si 0.89 20.71 29.54 -169.99 -5.02 15.68 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 C 0.11 2.62 5.41 -3.49 -0.02 2.60 16 29 H 0.07 1.21 7.10 -51.93 -0.37 0.84 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 1.24 6.84 -51.93 -0.36 0.88 16 33 H 0.08 1.37 6.95 -51.93 -0.36 1.01 16 34 H 0.10 1.18 7.25 -51.93 -0.38 0.80 16 35 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.38 1.84 9.12 45.56 0.42 2.26 16 43 H 0.06 0.98 6.30 -51.93 -0.33 0.65 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 50 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 51 H 0.12 3.39 5.18 -51.93 -0.27 3.12 16 LS Contribution 409.33 15.07 6.17 6.17 Total: -1.00 -32.79 409.33 -7.82 -40.60 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.95 Total: 4.58 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 0.01 Total: 11.74 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: -0.31 Total: -45.62 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.72 Total: -33.16 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.79 -7.82 -40.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330415987.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.014 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds