Wall clock time and date at job start Wed Apr 1 2020 04:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28384 * 124.37129 * 2 1 4 4 C 1.31577 * 111.96303 * 180.19858 * 3 2 1 5 5 C 1.47391 * 126.82480 * 179.80565 * 4 3 2 6 6 O 1.21609 * 120.00253 * 179.69092 * 5 4 3 7 7 N 1.34775 * 119.99785 * 359.68850 * 5 4 3 8 8 C 1.46502 * 120.00117 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.43035 * 32.46165 * 8 7 5 10 10 C 1.54890 * 110.48904 * 269.77993 * 8 7 5 11 11 C 1.54888 * 102.74845 * 203.37812 * 10 8 7 12 12 C 1.54263 * 104.19606 * 37.93987 * 11 10 8 13 13 H 1.09003 * 110.07272 * 95.69767 * 12 11 10 14 14 C 1.53001 * 110.03243 * 217.10385 * 12 11 10 15 15 N 1.46490 * 109.47264 * 292.16632 * 14 12 11 16 16 C 1.36935 * 120.00121 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46653 * 299.99639 * 20 18 16 23 23 H 1.48495 * 109.47483 * 60.00002 * 20 18 16 24 24 C 1.53877 * 106.59888 * 336.39198 * 12 11 10 25 25 C 1.46891 * 106.35369 * 359.54912 * 4 3 2 26 26 C 1.39185 * 135.55792 * 180.26341 * 25 4 3 27 27 C 1.36724 * 119.50580 * 179.97438 * 26 25 4 28 28 C 1.38898 * 120.52339 * 359.97438 * 27 26 25 29 29 C 1.36687 * 120.89527 * 0.02562 * 28 27 26 30 30 C 1.37046 * 124.37020 * 179.68909 * 2 1 3 31 31 H 1.09001 * 109.46766 * 270.31437 * 1 2 3 32 32 H 1.08999 * 109.46565 * 30.30957 * 1 2 3 33 33 H 1.08999 * 109.47277 * 150.30912 * 1 2 3 34 34 H 0.96997 * 120.00287 * 0.02562 * 7 5 4 35 35 H 1.09003 * 110.75396 * 321.69294 * 10 8 7 36 36 H 1.08997 * 110.75901 * 84.87573 * 10 8 7 37 37 H 1.09000 * 110.48442 * 279.26009 * 11 10 8 38 38 H 1.09000 * 110.48713 * 156.61850 * 11 10 8 39 39 H 1.09003 * 109.46836 * 172.16340 * 14 12 11 40 40 H 1.08999 * 109.47071 * 52.17379 * 14 12 11 41 41 H 0.97000 * 120.00577 * 0.02562 * 15 14 12 42 42 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 43 43 H 1.08996 * 110.03408 * 119.28815 * 24 12 11 44 44 H 1.09004 * 110.02872 * 240.66372 * 24 12 11 45 45 H 1.07989 * 120.25217 * 359.97158 * 26 25 4 46 46 H 1.08004 * 119.73891 * 179.97438 * 27 26 25 47 47 H 1.07998 * 119.55537 * 179.97438 * 28 27 26 48 48 H 1.07995 * 120.10948 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1898 1.0597 0.0000 4 6 3.4748 0.7770 -0.0042 5 6 4.5911 1.7394 -0.0095 6 8 5.7394 1.3389 -0.0074 7 7 4.3393 3.0634 -0.0168 8 6 5.4488 4.0201 -0.0215 9 1 6.3000 3.6129 -0.5672 10 6 5.8551 4.3862 1.4276 11 6 6.5385 5.7651 1.2530 12 6 5.6955 6.4708 0.1707 13 1 4.9493 7.1135 0.6378 14 6 6.6018 7.2987 -0.7425 15 7 7.1616 8.4219 0.0131 16 6 8.0086 9.3057 -0.6006 17 1 8.2635 9.1749 -1.6419 18 6 8.5395 10.3697 0.1155 19 7 8.2292 10.5288 1.3847 20 14 9.6943 11.5758 -0.7220 21 1 10.1194 12.6123 0.2527 22 1 10.8885 10.8500 -1.2244 23 1 8.9936 12.2233 -1.8599 24 6 5.0026 5.3612 -0.6396 25 6 3.5759 -0.6884 0.0037 26 6 4.6166 -1.6127 0.0087 27 6 4.3299 -2.9495 0.0165 28 6 3.0120 -3.3884 0.0199 29 6 1.9756 -2.4973 0.0151 30 6 2.2387 -1.1312 0.0061 31 1 -0.3633 0.0056 1.0277 32 1 -0.3632 0.8872 -0.5186 33 1 -0.3634 -0.8927 -0.5090 34 1 3.4234 3.3829 -0.0181 35 1 4.9756 4.4690 2.0662 36 1 6.5547 3.6533 1.8295 37 1 7.5672 5.6410 0.9145 38 1 6.5083 6.3269 2.1866 39 1 6.0209 7.6794 -1.5826 40 1 7.4119 6.6719 -1.1155 41 1 6.9330 8.5392 0.9485 42 1 7.6293 9.9027 1.8195 43 1 3.9202 5.4649 -0.5651 44 1 5.3114 5.4131 -1.6837 45 1 5.6428 -1.2766 0.0065 46 1 5.1345 -3.6700 0.0200 47 1 2.8034 -4.4480 0.0256 48 1 0.9557 -2.8525 0.0174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332319679.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:34 Heat of formation + Delta-G solvation = 59.479762 kcal Electronic energy + Delta-G solvation = -28494.431098 eV Core-core repulsion = 24550.505173 eV Total energy + Delta-G solvation = -3943.925925 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.86136 -39.84594 -38.17906 -38.00822 -34.98017 -34.09358 -33.45162 -31.05462 -30.95395 -30.50229 -28.71984 -28.36154 -26.95396 -24.37517 -23.91259 -22.88492 -22.36629 -22.35168 -20.55254 -20.30828 -19.47770 -18.30479 -17.61537 -17.15426 -16.74675 -16.42230 -16.32075 -15.65011 -15.20379 -14.95233 -14.63737 -14.54391 -14.19104 -13.92556 -13.68431 -13.56979 -13.44574 -13.30980 -13.20994 -13.08838 -12.39615 -12.36545 -12.19545 -11.77992 -11.61101 -11.38859 -11.28533 -10.95106 -10.71647 -10.67010 -10.47347 -10.36738 -10.33107 -10.21483 -10.09588 -9.92714 -9.17030 -9.13349 -9.07441 -8.81318 -8.37604 -6.93033 -6.04767 -3.03344 0.44708 0.96984 1.57019 1.90175 2.94238 3.04977 3.44943 3.55359 3.59342 3.76608 3.81511 4.00172 4.36330 4.51138 4.56474 4.59857 4.67518 4.70169 4.77230 4.82297 4.84171 4.99984 5.05659 5.12212 5.28856 5.50120 5.53650 5.57966 5.59396 5.62396 5.69489 5.82202 5.85198 5.91750 6.03752 6.09868 6.11597 6.14091 6.19259 6.26817 6.27931 6.46048 6.49089 6.53338 6.62147 6.78828 6.91776 7.26329 7.53266 7.86873 8.05656 8.82046 9.30379 10.16750 10.32357 11.44089 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.028821 B = 0.001747 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.287943 B =16025.868573 C =16550.238342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.318 5.318 3 N -0.210 5.210 4 C 0.002 3.998 5 C 0.606 3.394 6 O -0.528 6.528 7 N -0.707 5.707 8 C 0.140 3.860 9 H 0.099 0.901 10 C -0.133 4.133 11 C -0.111 4.111 12 C -0.097 4.097 13 H 0.073 0.927 14 C 0.165 3.835 15 N -0.743 5.743 16 C -0.329 4.329 17 H 0.063 0.937 18 C -0.048 4.048 19 N -0.945 5.945 20 Si 1.080 2.920 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.296 1.296 24 C -0.120 4.120 25 C -0.109 4.109 26 C -0.041 4.041 27 C -0.142 4.142 28 C -0.084 4.084 29 C -0.121 4.121 30 C 0.063 3.937 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.404 0.596 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.017 0.983 40 H 0.021 0.979 41 H 0.367 0.633 42 H 0.254 0.746 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.140 0.860 46 H 0.131 0.869 47 H 0.131 0.869 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.901 -30.223 -2.283 35.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.111 5.111 3 N -0.039 5.039 4 C -0.168 4.168 5 C 0.390 3.610 6 O -0.402 6.402 7 N -0.358 5.358 8 C 0.036 3.964 9 H 0.117 0.883 10 C -0.172 4.172 11 C -0.149 4.149 12 C -0.116 4.116 13 H 0.091 0.909 14 C 0.037 3.963 15 N -0.389 5.389 16 C -0.461 4.461 17 H 0.081 0.919 18 C -0.245 4.245 19 N -0.591 5.591 20 Si 0.911 3.089 21 H -0.211 1.211 22 H -0.223 1.223 23 H -0.223 1.223 24 C -0.159 4.159 25 C -0.116 4.116 26 C -0.062 4.062 27 C -0.161 4.161 28 C -0.104 4.104 29 C -0.142 4.142 30 C -0.048 4.048 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.240 0.760 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.035 0.965 40 H 0.039 0.961 41 H 0.200 0.800 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.157 0.843 46 H 0.149 0.851 47 H 0.149 0.851 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.003 -28.234 -2.317 33.565 hybrid contribution -1.256 -1.836 0.002 2.225 sum -19.259 -30.071 -2.315 35.784 Atomic orbital electron populations 1.22114 0.72949 1.05360 1.04310 1.45131 1.07184 1.00896 1.57853 1.72854 1.03838 1.14000 1.13233 1.22788 0.90221 0.92417 1.11403 1.16643 0.86310 0.81480 0.76591 1.90809 1.20480 1.78776 1.50136 1.45967 1.10703 1.05035 1.74113 1.22012 0.89172 0.88021 0.97218 0.88332 1.22893 1.00611 0.97785 0.95886 1.22319 0.99566 0.94056 0.98949 1.21903 0.97687 0.95795 0.96241 0.90900 1.20732 0.93682 0.88812 0.93067 1.42357 1.56578 1.29305 1.10628 1.20047 1.22836 1.06932 0.96245 0.91858 1.25768 1.02636 0.99314 0.96758 1.70881 1.38156 1.39510 1.10584 0.83237 0.75384 0.75887 0.74372 1.21064 1.22302 1.22340 1.22395 1.00289 0.92883 1.00348 1.19436 0.93054 0.91799 1.07324 1.20447 0.98975 0.91617 0.95127 1.20874 0.96812 0.95466 1.02939 1.20756 0.92229 0.99463 0.97969 1.19750 1.00124 0.88367 1.05953 1.19166 0.90538 0.90056 1.05067 0.89966 0.88417 0.88875 0.76041 0.91504 0.91263 0.90802 0.91427 0.96484 0.96106 0.80013 0.93461 0.91440 0.90684 0.84253 0.85149 0.85095 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.35 11.24 59.85 0.67 1.03 16 2 N -0.32 -2.79 3.74 -65.50 -0.24 -3.03 16 3 N -0.21 -2.28 11.52 34.46 0.40 -1.89 16 4 C 0.00 0.03 7.32 -80.75 -0.59 -0.57 16 5 C 0.61 8.33 7.81 -12.54 -0.10 8.23 16 6 O -0.53 -8.66 16.05 5.27 0.08 -8.58 16 7 N -0.71 -8.47 5.15 -53.28 -0.27 -8.74 16 8 C 0.14 1.83 3.22 -66.27 -0.21 1.62 16 9 H 0.10 1.44 7.55 -51.93 -0.39 1.05 16 10 C -0.13 -1.81 6.58 -24.74 -0.16 -1.97 16 11 C -0.11 -1.76 6.08 -25.07 -0.15 -1.91 16 12 C -0.10 -1.57 2.96 -89.50 -0.26 -1.83 16 13 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 14 C 0.16 3.41 5.31 -4.05 -0.02 3.38 16 15 N -0.74 -19.21 5.45 -59.91 -0.33 -19.54 16 16 C -0.33 -9.59 9.99 -15.06 -0.15 -9.74 16 17 H 0.06 1.82 7.83 -52.49 -0.41 1.40 16 18 C -0.05 -1.42 5.50 -17.43 -0.10 -1.51 16 19 N -0.95 -29.83 13.70 55.49 0.76 -29.07 16 20 Si 1.08 26.53 29.92 -169.99 -5.09 21.44 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 24 C -0.12 -1.57 6.19 -25.62 -0.16 -1.72 16 25 C -0.11 -1.28 6.34 -105.05 -0.67 -1.94 16 26 C -0.04 -0.43 9.87 -39.78 -0.39 -0.82 16 27 C -0.14 -1.08 9.98 -39.88 -0.40 -1.48 16 28 C -0.08 -0.53 9.96 -39.90 -0.40 -0.92 16 29 C -0.12 -0.82 9.94 -39.81 -0.40 -1.22 16 30 C 0.06 0.60 6.85 -84.21 -0.58 0.02 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.15 8.10 -51.93 -0.42 -0.27 16 34 H 0.40 4.10 8.10 -40.82 -0.33 3.77 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 1.29 7.76 -51.93 -0.40 0.89 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.02 0.45 8.00 -51.93 -0.42 0.03 16 41 H 0.37 9.63 6.38 -40.82 -0.26 9.37 16 42 H 0.25 7.89 6.77 -40.82 -0.28 7.61 16 43 H 0.07 0.76 7.73 -51.93 -0.40 0.36 16 44 H 0.07 0.98 7.67 -51.93 -0.40 0.58 16 45 H 0.14 1.50 7.65 -52.49 -0.40 1.10 16 46 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 47 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 48 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 LS Contribution 396.71 15.07 5.98 5.98 Total: -1.00 -36.35 396.71 -9.91 -46.26 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -7.13 Total: 8.52 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -4.06 Total: -11.36 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.31 Total: -62.26 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.08 Total: -8.58 kcal Atomic # 14 Polarization: 26.53 SS G_CDS: -5.09 Total: 21.44 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.35 -9.91 -46.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332319679.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.739 kcal (2) G-P(sol) polarization free energy of solvation -36.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds