Wall clock time and date at job start Wed Apr 1 2020 04:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28384 * 124.37129 * 2 1 4 4 C 1.31577 * 111.96303 * 180.19858 * 3 2 1 5 5 C 1.47391 * 126.82480 * 179.80565 * 4 3 2 6 6 O 1.21609 * 120.00253 * 179.69092 * 5 4 3 7 7 N 1.34775 * 119.99785 * 359.68850 * 5 4 3 8 8 C 1.46502 * 120.00117 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.43035 * 32.46165 * 8 7 5 10 10 C 1.54890 * 110.48904 * 269.77993 * 8 7 5 11 11 C 1.54888 * 102.74845 * 203.37812 * 10 8 7 12 12 C 1.54263 * 104.19606 * 37.93987 * 11 10 8 13 13 H 1.09003 * 110.07272 * 95.69767 * 12 11 10 14 14 C 1.53001 * 110.03243 * 217.10385 * 12 11 10 15 15 N 1.46490 * 109.47264 * 292.16632 * 14 12 11 16 16 C 1.36935 * 120.00121 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46653 * 299.99639 * 20 18 16 23 23 H 1.48495 * 109.47483 * 60.00002 * 20 18 16 24 24 C 1.53877 * 106.59888 * 336.39198 * 12 11 10 25 25 C 1.46891 * 106.35369 * 359.54912 * 4 3 2 26 26 C 1.39185 * 135.55792 * 180.26341 * 25 4 3 27 27 C 1.36724 * 119.50580 * 179.97438 * 26 25 4 28 28 C 1.38898 * 120.52339 * 359.97438 * 27 26 25 29 29 C 1.36687 * 120.89527 * 0.02562 * 28 27 26 30 30 C 1.37046 * 124.37020 * 179.68909 * 2 1 3 31 31 H 1.09001 * 109.46766 * 270.31437 * 1 2 3 32 32 H 1.08999 * 109.46565 * 30.30957 * 1 2 3 33 33 H 1.08999 * 109.47277 * 150.30912 * 1 2 3 34 34 H 0.96997 * 120.00287 * 0.02562 * 7 5 4 35 35 H 1.09003 * 110.75396 * 321.69294 * 10 8 7 36 36 H 1.08997 * 110.75901 * 84.87573 * 10 8 7 37 37 H 1.09000 * 110.48442 * 279.26009 * 11 10 8 38 38 H 1.09000 * 110.48713 * 156.61850 * 11 10 8 39 39 H 1.09003 * 109.46836 * 172.16340 * 14 12 11 40 40 H 1.08999 * 109.47071 * 52.17379 * 14 12 11 41 41 H 0.97000 * 120.00577 * 0.02562 * 15 14 12 42 42 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 43 43 H 1.08996 * 110.03408 * 119.28815 * 24 12 11 44 44 H 1.09004 * 110.02872 * 240.66372 * 24 12 11 45 45 H 1.07989 * 120.25217 * 359.97158 * 26 25 4 46 46 H 1.08004 * 119.73891 * 179.97438 * 27 26 25 47 47 H 1.07998 * 119.55537 * 179.97438 * 28 27 26 48 48 H 1.07995 * 120.10948 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1898 1.0597 0.0000 4 6 3.4748 0.7770 -0.0042 5 6 4.5911 1.7394 -0.0095 6 8 5.7394 1.3389 -0.0074 7 7 4.3393 3.0634 -0.0168 8 6 5.4488 4.0201 -0.0215 9 1 6.3000 3.6129 -0.5672 10 6 5.8551 4.3862 1.4276 11 6 6.5385 5.7651 1.2530 12 6 5.6955 6.4708 0.1707 13 1 4.9493 7.1135 0.6378 14 6 6.6018 7.2987 -0.7425 15 7 7.1616 8.4219 0.0131 16 6 8.0086 9.3057 -0.6006 17 1 8.2635 9.1749 -1.6419 18 6 8.5395 10.3697 0.1155 19 7 8.2292 10.5288 1.3847 20 14 9.6943 11.5758 -0.7220 21 1 10.1194 12.6123 0.2527 22 1 10.8885 10.8500 -1.2244 23 1 8.9936 12.2233 -1.8599 24 6 5.0026 5.3612 -0.6396 25 6 3.5759 -0.6884 0.0037 26 6 4.6166 -1.6127 0.0087 27 6 4.3299 -2.9495 0.0165 28 6 3.0120 -3.3884 0.0199 29 6 1.9756 -2.4973 0.0151 30 6 2.2387 -1.1312 0.0061 31 1 -0.3633 0.0056 1.0277 32 1 -0.3632 0.8872 -0.5186 33 1 -0.3634 -0.8927 -0.5090 34 1 3.4234 3.3829 -0.0181 35 1 4.9756 4.4690 2.0662 36 1 6.5547 3.6533 1.8295 37 1 7.5672 5.6410 0.9145 38 1 6.5083 6.3269 2.1866 39 1 6.0209 7.6794 -1.5826 40 1 7.4119 6.6719 -1.1155 41 1 6.9330 8.5392 0.9485 42 1 7.6293 9.9027 1.8195 43 1 3.9202 5.4649 -0.5651 44 1 5.3114 5.4131 -1.6837 45 1 5.6428 -1.2766 0.0065 46 1 5.1345 -3.6700 0.0200 47 1 2.8034 -4.4480 0.0256 48 1 0.9557 -2.8525 0.0174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332319679.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:32 Heat of formation + Delta-G solvation = 35.414778 kcal Electronic energy + Delta-G solvation = -28495.474634 eV Core-core repulsion = 24550.505173 eV Total energy + Delta-G solvation = -3944.969461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.54487 -40.94689 -39.28280 -38.77189 -36.75481 -35.09193 -34.53318 -32.85880 -31.54402 -31.16149 -30.12082 -29.44872 -27.87117 -26.00563 -24.85500 -24.22334 -23.61941 -23.05232 -21.68335 -21.24021 -20.79549 -19.35369 -19.03965 -18.28694 -17.43449 -17.39757 -17.19746 -16.88088 -16.23839 -16.08186 -15.80538 -15.62057 -15.36309 -15.14443 -15.08791 -14.94074 -14.65342 -14.36953 -13.94471 -13.68569 -13.58162 -13.13213 -12.94720 -12.87731 -12.82411 -12.61034 -12.53864 -12.23827 -12.12848 -12.05531 -11.87097 -11.84747 -11.78990 -11.51919 -11.30595 -11.16304 -11.03816 -10.91276 -10.18451 -9.80667 -9.10336 -9.00936 -8.40695 -5.33593 -0.26194 0.33072 0.80692 1.34989 1.57803 1.68245 1.84769 1.98948 2.14652 2.71343 2.77907 3.11527 3.38622 3.38803 3.48555 3.51078 3.70138 3.80318 3.96604 4.04261 4.11164 4.30063 4.32541 4.36974 4.38841 4.41301 4.41727 4.47877 4.52166 4.56141 4.64231 4.65491 4.74541 4.81954 4.94882 4.96802 5.00853 5.04450 5.14841 5.18934 5.29007 5.41548 5.43729 5.45930 5.55158 5.58228 5.67599 5.94820 6.34637 6.49547 6.73839 7.06510 7.10128 8.01138 8.12047 9.11569 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.028821 B = 0.001747 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.287943 B =16025.868573 C =16550.238342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.308 5.308 3 N -0.207 5.207 4 C -0.038 4.038 5 C 0.605 3.395 6 O -0.566 6.566 7 N -0.696 5.696 8 C 0.146 3.854 9 H 0.081 0.919 10 C -0.122 4.122 11 C -0.108 4.108 12 C -0.087 4.087 13 H 0.075 0.925 14 C 0.162 3.838 15 N -0.755 5.755 16 C -0.337 4.337 17 H 0.064 0.936 18 C -0.106 4.106 19 N -0.974 5.974 20 Si 1.129 2.871 21 H -0.291 1.291 22 H -0.279 1.279 23 H -0.276 1.276 24 C -0.108 4.108 25 C -0.138 4.138 26 C -0.078 4.078 27 C -0.132 4.132 28 C -0.083 4.083 29 C -0.110 4.110 30 C 0.049 3.951 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.415 0.585 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.362 0.638 42 H 0.244 0.756 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.118 0.882 46 H 0.151 0.849 47 H 0.169 0.831 48 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.689 -32.438 -3.095 39.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.102 5.102 3 N -0.039 5.039 4 C -0.206 4.206 5 C 0.390 3.610 6 O -0.443 6.443 7 N -0.347 5.347 8 C 0.042 3.958 9 H 0.099 0.901 10 C -0.160 4.160 11 C -0.147 4.147 12 C -0.106 4.106 13 H 0.093 0.907 14 C 0.036 3.964 15 N -0.400 5.400 16 C -0.469 4.469 17 H 0.082 0.918 18 C -0.297 4.297 19 N -0.622 5.622 20 Si 0.953 3.047 21 H -0.217 1.217 22 H -0.205 1.205 23 H -0.203 1.203 24 C -0.147 4.147 25 C -0.146 4.146 26 C -0.098 4.098 27 C -0.151 4.151 28 C -0.103 4.103 29 C -0.131 4.131 30 C -0.063 4.063 31 H 0.116 0.884 32 H 0.124 0.876 33 H 0.140 0.860 34 H 0.253 0.747 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.194 0.806 42 H 0.054 0.946 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.136 0.864 46 H 0.169 0.831 47 H 0.187 0.813 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -20.841 -30.482 -3.155 37.060 hybrid contribution -0.507 -1.308 0.239 1.423 sum -21.349 -31.790 -2.916 38.404 Atomic orbital electron populations 1.22593 0.70042 1.07292 1.05954 1.45638 1.08661 1.00242 1.55680 1.72768 1.03352 1.15035 1.12730 1.22550 0.90472 0.92781 1.14786 1.16888 0.86326 0.81972 0.75779 1.90775 1.22096 1.79432 1.52024 1.45794 1.10868 1.04390 1.73623 1.21791 0.89161 0.88274 0.96579 0.90103 1.22786 1.00725 0.95990 0.96522 1.22226 0.98602 0.95360 0.98469 1.21783 0.96930 0.96120 0.95788 0.90700 1.20901 0.94049 0.87795 0.93631 1.42560 1.56484 1.30214 1.10727 1.20417 1.22724 1.07291 0.96436 0.91773 1.27257 1.04208 1.01474 0.96720 1.70992 1.39392 1.40031 1.11785 0.82616 0.74230 0.73922 0.73885 1.21719 1.20534 1.20253 1.22288 1.01568 0.91111 0.99702 1.19730 0.94783 0.91675 1.08369 1.20459 0.98057 0.93064 0.98217 1.21219 0.98609 0.94502 1.00756 1.21222 0.91197 1.01367 0.96538 1.20256 1.02226 0.86941 1.03694 1.19494 0.89661 0.91315 1.05796 0.88378 0.87593 0.85997 0.74735 0.89993 0.92009 0.92991 0.92140 0.96272 0.96735 0.80617 0.94597 0.88669 0.90423 0.86367 0.83080 0.81319 0.81795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.35 11.24 127.77 1.44 1.78 16 2 N -0.31 -4.83 3.74 -361.13 -1.35 -6.18 16 3 N -0.21 -4.37 11.52 -44.87 -0.52 -4.89 16 4 C -0.04 -0.98 7.32 43.86 0.32 -0.66 16 5 C 0.60 17.46 7.81 86.65 0.68 18.14 16 6 O -0.57 -20.03 16.05 -4.06 -0.07 -20.09 16 7 N -0.70 -16.72 5.15 -440.75 -2.27 -18.99 16 8 C 0.15 3.87 3.22 46.06 0.15 4.02 16 9 H 0.08 2.47 7.55 -2.39 -0.02 2.45 16 10 C -0.12 -3.34 6.58 31.89 0.21 -3.13 16 11 C -0.11 -3.53 6.08 31.67 0.19 -3.34 16 12 C -0.09 -2.80 2.96 -10.07 -0.03 -2.83 16 13 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 14 C 0.16 6.80 5.31 86.38 0.46 7.26 16 15 N -0.76 -39.79 5.45 -343.47 -1.87 -41.66 16 16 C -0.34 -19.81 9.99 84.03 0.84 -18.97 16 17 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 18 C -0.11 -6.33 5.50 84.86 0.47 -5.86 16 19 N -0.97 -62.50 13.70 21.65 0.30 -62.20 16 20 Si 1.13 53.41 29.92 68.60 2.05 55.46 16 21 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 C -0.11 -2.70 6.19 31.32 0.19 -2.51 16 25 C -0.14 -3.32 6.34 -20.14 -0.13 -3.45 16 26 C -0.08 -1.70 9.87 22.14 0.22 -1.48 16 27 C -0.13 -1.84 9.98 22.07 0.22 -1.62 16 28 C -0.08 -0.76 9.96 22.06 0.22 -0.55 16 29 C -0.11 -1.11 9.94 22.12 0.22 -0.89 16 30 C 0.05 0.85 6.85 39.18 0.27 1.12 16 31 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.12 -0.16 8.10 -2.39 -0.02 -0.18 16 34 H 0.42 8.07 8.10 -92.71 -0.75 7.32 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.05 1.91 7.76 -2.39 -0.02 1.89 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.01 0.64 8.00 -2.39 -0.02 0.62 16 41 H 0.36 19.55 6.38 -92.71 -0.59 18.96 16 42 H 0.24 15.57 6.77 -92.71 -0.63 14.94 16 43 H 0.09 1.90 7.73 -2.39 -0.02 1.88 16 44 H 0.08 1.95 7.67 -2.38 -0.02 1.93 16 45 H 0.12 2.93 7.65 -2.92 -0.02 2.90 16 46 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 47 H 0.17 0.29 8.06 -2.91 -0.02 0.27 16 48 H 0.16 0.36 8.06 -2.91 -0.02 0.34 16 Total: -1.00 -82.09 396.71 1.99 -80.09 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: -0.21 Total: 31.43 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 5.93 Total: -12.98 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -5.71 Total: -133.91 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.07 Total: -20.09 kcal Atomic # 14 Polarization: 53.41 SS G_CDS: 2.05 Total: 55.46 kcal Total: -82.09 1.99 -80.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332319679.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.510 kcal (2) G-P(sol) polarization free energy of solvation -82.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds