Wall clock time and date at job start Wed Apr 1 2020 02:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42902 * 109.47054 * 2 1 4 4 C 1.42903 * 113.99782 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46872 * 179.97438 * 4 3 2 6 6 O 1.42892 * 109.46959 * 65.00052 * 5 4 3 7 7 C 1.42903 * 113.99924 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47222 * 180.02562 * 7 6 5 9 9 N 1.46502 * 109.47360 * 64.99823 * 8 7 6 10 10 C 1.34782 * 120.00166 * 180.02562 * 9 8 7 11 11 O 1.21350 * 119.99528 * 359.97438 * 10 9 8 12 12 C 1.49446 * 120.00084 * 179.97438 * 10 9 8 13 13 O 1.21356 * 119.99803 * 353.37756 * 12 10 9 14 14 N 1.34768 * 120.00057 * 173.37736 * 12 10 9 15 15 C 1.46923 * 120.63140 * 353.06161 * 14 12 10 16 16 C 1.53197 * 108.77603 * 126.41596 * 15 14 12 17 17 C 1.53036 * 109.34037 * 54.62030 * 16 15 14 18 18 C 1.53043 * 109.53781 * 298.68543 * 17 16 15 19 19 H 1.09000 * 109.49772 * 301.34791 * 18 17 16 20 20 C 1.50699 * 109.49861 * 181.28187 * 18 17 16 21 21 H 1.08009 * 119.99826 * 0.06421 * 20 18 17 22 22 C 1.37874 * 120.00391 * 180.34183 * 20 18 17 23 23 N 1.31511 * 119.99935 * 359.72505 * 22 20 18 24 24 Si 1.86803 * 120.00371 * 179.72468 * 22 20 18 25 25 H 1.48501 * 109.46987 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47049 * 119.99668 * 24 22 20 27 27 H 1.48495 * 109.47162 * 239.99991 * 24 22 20 28 28 C 1.46927 * 120.63303 * 173.08900 * 14 12 10 29 29 H 1.08999 * 109.47489 * 60.00264 * 1 2 3 30 30 H 1.09004 * 109.47212 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47063 * 299.99874 * 1 2 3 32 32 H 1.09001 * 109.47063 * 240.00126 * 2 1 3 33 33 H 1.08999 * 109.47489 * 119.99736 * 2 1 3 34 34 H 1.08996 * 109.47274 * 60.00618 * 4 3 2 35 35 H 1.08991 * 109.47473 * 299.99944 * 4 3 2 36 36 H 1.09008 * 109.47078 * 305.00081 * 5 4 3 37 37 H 1.08998 * 109.46732 * 185.00383 * 5 4 3 38 38 H 1.08999 * 109.47467 * 59.99857 * 7 6 5 39 39 H 1.09005 * 109.47120 * 299.99967 * 7 6 5 40 40 H 1.09007 * 109.47352 * 304.99598 * 8 7 6 41 41 H 1.09010 * 109.47442 * 184.99684 * 8 7 6 42 42 H 0.96996 * 120.00059 * 359.97438 * 9 8 7 43 43 H 1.08998 * 109.59171 * 246.19792 * 15 14 12 44 44 H 1.09003 * 109.58922 * 6.48999 * 15 14 12 45 45 H 1.08995 * 109.50150 * 174.58993 * 16 15 14 46 46 H 1.09009 * 109.49617 * 294.68452 * 16 15 14 47 47 H 1.08997 * 109.49188 * 178.64856 * 17 16 15 48 48 H 1.09001 * 109.43006 * 58.68768 * 17 16 15 49 49 H 0.97000 * 120.00590 * 180.02562 * 23 22 20 50 50 H 1.09003 * 109.59192 * 113.79627 * 28 14 12 51 51 H 1.08998 * 109.70190 * 353.44355 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 8 3.3975 3.5461 1.2203 7 6 3.7181 4.9350 1.3217 8 6 3.2162 5.4779 2.6612 9 7 3.9458 4.8309 3.7546 10 6 3.6693 5.1544 5.0334 11 8 2.8165 5.9820 5.2791 12 6 4.4131 4.4940 6.1488 13 8 5.1785 3.5826 5.9117 14 7 4.2338 4.9106 7.4179 15 6 3.4307 6.1065 7.7068 16 6 2.3495 5.7394 8.7282 17 6 3.0073 5.1116 9.9591 18 6 3.7413 3.8323 9.5508 19 1 3.0350 3.1363 9.0982 20 6 4.3622 3.1981 10.7686 21 1 4.2444 3.6603 11.7377 22 6 5.0855 2.0308 10.6451 23 7 5.2291 1.4679 9.4653 24 14 5.8616 1.2487 12.1536 25 1 5.5556 2.0722 13.3509 26 1 5.3136 -0.1189 12.3395 27 1 7.3331 1.1716 11.9695 28 6 4.8383 4.1778 8.5388 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8340 0.9765 -0.8892 35 1 3.8332 0.9767 0.8907 36 1 3.3498 3.4410 -0.8425 37 1 4.9082 3.0254 -0.0893 38 1 3.2401 5.4787 0.5068 39 1 4.7988 5.0639 1.2598 40 1 2.1510 5.2693 2.7616 41 1 3.3811 6.5547 2.7016 42 1 4.6272 4.1691 3.5582 43 1 4.0715 6.8866 8.1177 44 1 2.9632 6.4633 6.7891 45 1 1.8079 6.6379 9.0236 46 1 1.6559 5.0258 8.2832 47 1 2.2424 4.8714 10.6975 48 1 3.7185 5.8167 10.3895 49 1 5.7376 0.6465 9.3783 50 1 5.5940 4.8006 9.0175 51 1 5.2994 3.2607 8.1723 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333803240.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:12 Heat of formation + Delta-G solvation = -177.862508 kcal Electronic energy + Delta-G solvation = -30483.859737 eV Core-core repulsion = 26190.040208 eV Total energy + Delta-G solvation = -4293.819529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.93335 -39.94095 -39.42047 -38.54220 -38.39252 -36.14179 -35.11697 -33.46100 -32.80317 -31.56924 -31.10984 -29.49743 -27.56744 -26.78932 -24.71631 -23.70030 -23.51971 -23.50744 -22.98436 -21.68978 -20.45788 -18.92172 -18.26115 -18.18360 -17.93481 -17.83255 -17.12549 -16.93446 -16.60486 -16.50335 -16.32311 -16.03673 -15.56342 -15.53148 -15.34203 -14.75851 -14.72295 -14.48048 -14.45686 -14.14533 -13.93563 -13.67214 -13.48149 -13.42420 -13.06035 -12.91062 -12.85456 -12.55852 -12.45318 -12.36120 -12.30355 -12.16719 -12.11608 -11.86803 -11.71226 -11.60232 -11.15764 -10.98624 -10.62326 -10.56553 -10.55508 -10.34363 -9.98020 -9.54314 -8.12457 -6.29180 0.36358 1.36049 1.41748 1.42724 1.54211 2.16567 2.41018 2.56133 2.68864 2.74920 3.15789 3.34201 3.84476 4.09924 4.13819 4.15088 4.19023 4.19340 4.24691 4.32746 4.34663 4.42447 4.47091 4.49057 4.54825 4.58375 4.65724 4.71363 4.75616 4.80475 4.81932 4.88331 4.90888 5.01313 5.05601 5.16397 5.23827 5.23991 5.28203 5.40428 5.54083 5.57056 5.83692 5.93559 6.00191 6.18177 6.29339 6.31560 6.45250 6.75035 6.83582 6.99431 7.40704 8.91820 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010467 B = 0.002465 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.445470 B =11357.970772 C =12788.685220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.408 6.408 4 C 0.055 3.945 5 C 0.062 3.938 6 O -0.410 6.410 7 C 0.051 3.949 8 C 0.116 3.884 9 N -0.682 5.682 10 C 0.520 3.480 11 O -0.521 6.521 12 C 0.485 3.515 13 O -0.560 6.560 14 N -0.575 5.575 15 C 0.049 3.951 16 C -0.121 4.121 17 C -0.106 4.106 18 C 0.037 3.963 19 H -0.013 1.013 20 C -0.534 4.534 21 H 0.063 0.937 22 C 0.010 3.990 23 N -0.916 5.916 24 Si 0.961 3.039 25 H -0.262 1.262 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.121 3.879 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.110 0.890 42 H 0.417 0.583 43 H 0.072 0.928 44 H 0.156 0.844 45 H 0.099 0.901 46 H 0.043 0.957 47 H 0.053 0.947 48 H 0.058 0.942 49 H 0.261 0.739 50 H 0.045 0.955 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.004 6.405 -23.113 24.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.328 6.328 4 C -0.021 4.021 5 C -0.014 4.014 6 O -0.330 6.330 7 C -0.025 4.025 8 C -0.006 4.006 9 N -0.334 5.334 10 C 0.301 3.699 11 O -0.400 6.400 12 C 0.267 3.733 13 O -0.440 6.440 14 N -0.306 5.306 15 C -0.071 4.071 16 C -0.159 4.159 17 C -0.144 4.144 18 C 0.018 3.982 19 H 0.005 0.995 20 C -0.572 4.572 21 H 0.081 0.919 22 C -0.190 4.190 23 N -0.554 5.554 24 Si 0.786 3.214 25 H -0.186 1.186 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.001 4.001 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.128 0.872 42 H 0.253 0.747 43 H 0.091 0.909 44 H 0.172 0.828 45 H 0.117 0.883 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.070 0.930 50 H 0.063 0.937 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.351 6.437 -23.028 24.304 hybrid contribution 1.129 -1.458 0.807 2.013 sum -3.222 4.979 -22.221 22.999 Atomic orbital electron populations 1.21757 0.93261 1.03230 1.02496 1.22620 0.96248 0.83186 1.00620 1.87916 1.21793 1.27575 1.95562 1.22720 0.81416 0.96432 1.01567 1.22699 0.99755 0.92070 0.86893 1.88003 1.81655 1.23768 1.39574 1.22875 1.01084 0.82296 0.96254 1.21788 0.96899 0.98231 0.83644 1.45792 1.40396 1.42986 1.04228 1.19927 0.83173 0.82293 0.84528 1.90268 1.33756 1.34079 1.81933 1.20508 0.83405 0.84358 0.84997 1.90724 1.37943 1.31393 1.83897 1.48465 1.48927 1.28088 1.05124 1.23328 0.93518 0.85402 1.04859 1.21826 0.97387 1.01202 0.95468 1.21558 0.98912 0.96844 0.97088 1.18925 0.92809 0.92971 0.93463 0.99480 1.21512 1.33228 1.08227 0.94247 0.91851 1.25908 0.96763 0.97546 0.98753 1.70065 1.41310 1.19709 1.24353 0.85458 0.77962 0.78183 0.79773 1.18563 1.20818 1.20650 1.21943 0.96633 0.95749 0.85747 0.91674 0.89311 0.93288 0.91628 0.93913 0.89298 0.93603 0.91295 0.89393 0.88667 0.90568 0.91108 0.87224 0.74653 0.90942 0.82763 0.88281 0.93764 0.92811 0.92305 0.92973 0.93686 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 10.28 71.98 0.74 -1.59 16 2 C 0.05 0.85 6.66 71.98 0.48 1.33 16 3 O -0.41 -8.96 10.31 -144.34 -1.49 -10.45 16 4 C 0.05 0.92 6.32 71.98 0.45 1.37 16 5 C 0.06 0.89 6.32 71.98 0.45 1.35 16 6 O -0.41 -8.41 10.25 -144.34 -1.48 -9.89 16 7 C 0.05 0.71 6.07 71.98 0.44 1.14 16 8 C 0.12 2.19 6.06 86.38 0.52 2.71 16 9 N -0.68 -18.09 5.49 -464.39 -2.55 -20.64 16 10 C 0.52 17.62 7.78 87.27 0.68 18.29 16 11 O -0.52 -17.66 13.10 -3.25 -0.04 -17.70 16 12 C 0.48 20.75 7.74 87.27 0.68 21.43 16 13 O -0.56 -27.43 15.95 -3.27 -0.05 -27.48 16 14 N -0.57 -25.14 2.97 -820.48 -2.44 -27.58 16 15 C 0.05 1.74 6.27 86.36 0.54 2.28 16 16 C -0.12 -4.26 6.08 30.67 0.19 -4.07 16 17 C -0.11 -4.43 5.11 30.62 0.16 -4.27 16 18 C 0.04 1.97 2.25 -11.46 -0.03 1.94 16 19 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 20 C -0.53 -29.89 8.57 25.60 0.22 -29.67 16 21 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 22 C 0.01 0.55 5.30 84.65 0.45 0.99 16 23 N -0.92 -55.59 11.38 21.45 0.24 -55.34 16 24 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 25 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 27 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 28 C 0.12 6.23 5.38 86.36 0.46 6.70 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.42 11.07 7.96 -92.71 -0.74 10.33 16 43 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.16 5.22 3.78 -78.73 -0.30 4.92 16 45 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 46 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 47 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 49 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 50 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 51 H 0.08 5.04 5.17 -2.39 -0.01 5.02 16 Total: -1.00 -75.05 412.31 0.54 -74.50 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: -0.11 Total: 28.13 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: 6.43 Total: 19.94 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -4.75 Total: -103.56 kcal Atomic # 8 Polarization: -62.46 SS G_CDS: -3.06 Total: -65.52 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -75.05 0.54 -74.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333803240.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.361 kcal (2) G-P(sol) polarization free energy of solvation -75.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds