Wall clock time and date at job start Wed Apr 1 2020 01:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00061 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00225 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46861 * 89.99972 * 9 7 5 11 11 H 1.48498 * 109.47453 * 210.00313 * 9 7 5 12 12 H 1.48505 * 109.46941 * 330.00240 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 C 1.50703 * 109.47064 * 179.97438 * 15 13 3 17 17 C 1.39949 * 126.01555 * 90.02144 * 16 15 13 18 18 C 1.50699 * 125.81839 * 359.94559 * 17 16 15 19 19 N 1.30814 * 108.36749 * 179.97438 * 17 16 15 20 20 N 1.40090 * 108.25917 * 0.02562 * 19 17 16 21 21 C 1.39824 * 126.10789 * 179.97438 * 20 19 17 22 22 C 1.38943 * 119.68382 * 335.02716 * 21 20 19 23 23 C 1.38415 * 119.10212 * 179.97438 * 22 21 20 24 24 C 1.38797 * 118.48446 * 0.02562 * 23 22 21 25 25 C 1.38121 * 119.29536 * 359.97438 * 24 23 22 26 26 N 1.31893 * 120.84069 * 359.72695 * 25 24 23 27 27 C 1.35279 * 126.01599 * 269.71255 * 16 15 13 28 28 C 1.50709 * 126.19070 * 0.02562 * 27 16 15 29 29 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 30 30 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 32 32 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 33 33 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 34 34 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 35 35 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 36 36 H 0.96997 * 120.00410 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 38 38 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 39 39 H 1.09002 * 109.47303 * 89.99762 * 18 17 16 40 40 H 1.08998 * 109.47269 * 210.00267 * 18 17 16 41 41 H 1.09007 * 109.47044 * 329.99904 * 18 17 16 42 42 H 1.07996 * 120.45140 * 0.02562 * 22 21 20 43 43 H 1.08000 * 120.75792 * 180.02562 * 23 22 21 44 44 H 1.08001 * 120.35150 * 180.02562 * 24 23 22 45 45 H 1.07996 * 119.58164 * 180.02562 * 25 24 23 46 46 H 1.08998 * 109.47342 * 89.99969 * 28 27 16 47 47 H 1.09003 * 109.46595 * 209.99899 * 28 27 16 48 48 H 1.09000 * 109.47071 * 329.99729 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 5.3911 2.1826 -3.2578 9 14 3.0125 3.4340 -3.9299 10 1 3.1149 4.8545 -3.5091 11 1 3.4059 3.3108 -5.3565 12 1 1.6130 2.9671 -3.7602 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 6 2.3191 2.2291 3.6178 17 6 1.4302 3.1102 4.2440 18 6 -0.0215 3.3002 3.8870 19 7 2.0744 3.7413 5.1916 20 7 3.3985 3.2840 5.2019 21 6 4.4110 3.7110 6.0666 22 6 4.3357 4.9722 6.6446 23 6 5.3443 5.3824 7.4992 24 6 6.3974 4.5126 7.7460 25 6 6.4072 3.2731 7.1366 26 7 5.4286 2.9078 6.3313 27 6 3.5218 2.3476 4.2256 28 6 4.7731 1.5824 3.8793 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5818 1.6876 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 5.7170 2.5725 -4.0840 37 1 0.9443 1.0114 2.5302 38 1 2.6227 0.4186 2.5299 39 1 -0.6321 2.6090 4.4681 40 1 -0.3196 4.3245 4.1105 41 1 -0.1629 3.1044 2.8240 42 1 3.5012 5.6234 6.4307 43 1 5.3126 6.3570 7.9634 44 1 7.2002 4.8015 8.4081 45 1 7.2241 2.5925 7.3256 46 1 5.3397 2.1330 3.1283 47 1 5.3821 1.4577 4.7747 48 1 4.5026 0.6030 3.4846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361961280.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:27 Heat of formation + Delta-G solvation = 86.061921 kcal Electronic energy + Delta-G solvation = -29916.972678 eV Core-core repulsion = 25974.199442 eV Total energy + Delta-G solvation = -3942.773236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.70895 -40.12681 -38.91025 -35.32059 -34.41348 -33.20822 -32.70409 -32.45586 -31.08214 -30.27561 -29.26036 -27.82465 -27.39394 -25.82721 -23.89059 -23.23786 -22.91579 -22.13105 -19.97273 -19.60482 -18.15651 -17.71052 -16.87841 -16.68759 -16.46284 -16.20507 -15.42643 -15.34857 -14.79312 -14.76101 -14.14780 -14.03706 -13.69357 -13.59777 -13.42068 -13.31596 -13.13315 -12.92323 -12.83392 -12.48153 -12.35152 -12.31190 -12.23040 -12.12417 -11.87283 -11.71582 -11.52992 -11.25865 -10.93197 -10.68144 -10.53744 -10.42386 -10.29638 -10.11552 -10.02618 -9.71941 -9.50031 -8.98257 -8.68695 -8.55612 -8.06798 -7.63912 -6.05592 -4.03517 0.55843 0.92443 2.02787 2.14616 2.74973 3.31177 3.37136 3.39193 3.46829 3.51754 3.98940 4.14092 4.36410 4.42507 4.59101 4.71508 4.76726 4.85979 4.94171 5.15649 5.22978 5.25375 5.30138 5.37095 5.41404 5.47127 5.55368 5.59738 5.61406 5.65027 5.72309 5.83001 5.84131 5.87741 5.91610 6.03416 6.09222 6.18746 6.19890 6.23408 6.36139 6.44710 6.67065 6.78983 7.01222 7.17530 7.39642 7.43725 7.65992 7.85835 8.35462 8.51580 8.97659 9.10945 9.55558 11.07912 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.012233 B = 0.003087 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.328064 B = 9068.181709 C =10135.894174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.596 5.596 4 C 0.217 3.783 5 C -0.525 4.525 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.875 3.125 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.508 3.492 14 O -0.532 6.532 15 C -0.062 4.062 16 C -0.204 4.204 17 C 0.112 3.888 18 C -0.074 4.074 19 N -0.294 5.294 20 N -0.332 5.332 21 C 0.383 3.617 22 C -0.165 4.165 23 C -0.053 4.053 24 C -0.192 4.192 25 C 0.130 3.870 26 N -0.503 5.503 27 C 0.128 3.872 28 C -0.104 4.104 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.028 0.972 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.166 0.834 46 H 0.082 0.918 47 H 0.098 0.902 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.406 -1.389 21.325 22.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.328 5.328 4 C 0.096 3.904 5 C -0.564 4.564 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.702 3.298 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.295 3.705 14 O -0.409 6.409 15 C -0.103 4.103 16 C -0.214 4.214 17 C -0.057 4.057 18 C -0.132 4.132 19 N -0.113 5.113 20 N -0.110 5.110 21 C 0.156 3.844 22 C -0.187 4.187 23 C -0.079 4.079 24 C -0.212 4.212 25 C -0.028 4.028 26 N -0.216 5.216 27 C 0.007 3.993 28 C -0.162 4.162 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.163 0.837 43 H 0.160 0.840 44 H 0.158 0.842 45 H 0.183 0.817 46 H 0.100 0.900 47 H 0.116 0.884 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.054 -0.668 21.729 22.319 hybrid contribution -0.310 0.782 -1.009 1.314 sum -5.364 0.114 20.720 21.404 Atomic orbital electron populations 1.22240 0.96866 1.01529 1.02206 1.21434 0.93346 0.83976 1.03062 1.47942 1.64574 1.13328 1.06960 1.19607 0.97164 0.93336 0.80276 1.21348 0.95416 1.32667 1.06950 0.90789 1.24855 0.94970 0.95839 0.97398 1.69894 1.15157 1.45162 1.23554 0.86866 0.81552 0.81625 0.79736 1.20012 1.21136 1.19042 1.20338 0.78361 0.87034 0.84817 1.90673 1.44906 1.18194 1.87092 1.20032 1.03150 0.97165 0.89919 1.19190 0.92833 1.06249 1.03122 1.22317 0.97161 0.93464 0.92710 1.20230 0.87405 1.03115 1.02471 1.77323 0.86709 1.23486 1.23785 1.45374 1.07338 1.32147 1.26168 1.17710 0.86873 0.89635 0.90183 1.21688 1.01606 0.95534 0.99908 1.21513 0.92129 0.99722 0.94581 1.22128 1.00331 0.95803 1.02958 1.22578 0.94700 0.94895 0.90592 1.66986 1.02639 1.34827 1.17170 1.21123 0.97332 0.91459 0.89390 1.20737 0.92836 0.98922 1.03753 0.92314 0.92040 0.92886 0.89862 0.91351 0.95401 0.94769 0.92651 0.88687 0.88740 0.90245 0.90636 0.90055 0.83726 0.84018 0.84190 0.81717 0.89993 0.88356 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 10.24 37.16 0.38 -1.67 16 2 C 0.11 1.60 5.93 -4.05 -0.02 1.58 16 3 N -0.60 -12.08 2.46 -175.06 -0.43 -12.51 16 4 C 0.22 5.32 4.23 -5.19 -0.02 5.30 16 5 C -0.53 -15.16 9.94 -34.44 -0.34 -15.50 16 6 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 9 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 10 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 13 C 0.51 10.36 7.67 -10.98 -0.08 10.27 16 14 O -0.53 -13.45 15.61 5.56 0.09 -13.36 16 15 C -0.06 -0.93 4.19 -29.03 -0.12 -1.06 16 16 C -0.20 -3.40 4.59 -105.03 -0.48 -3.88 16 17 C 0.11 1.79 7.21 -82.39 -0.59 1.19 16 18 C -0.07 -0.88 10.11 36.01 0.36 -0.52 16 19 N -0.29 -4.97 12.10 33.68 0.41 -4.56 16 20 N -0.33 -5.62 3.78 -8.38 -0.03 -5.65 16 21 C 0.38 5.66 7.36 -154.36 -1.14 4.53 16 22 C -0.16 -2.02 9.74 -39.25 -0.38 -2.41 16 23 C -0.05 -0.47 10.17 -39.31 -0.40 -0.87 16 24 C -0.19 -1.49 10.11 -39.42 -0.40 -1.89 16 25 C 0.13 1.22 11.18 -17.57 -0.20 1.03 16 26 N -0.50 -6.63 7.66 -12.29 -0.09 -6.73 16 27 C 0.13 2.19 6.89 -81.87 -0.56 1.63 16 28 C -0.10 -1.58 9.76 36.01 0.35 -1.23 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.59 7.22 -51.93 -0.38 0.21 16 32 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.07 0.86 6.44 -51.93 -0.33 0.52 16 34 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 35 H 0.03 0.91 6.85 -51.93 -0.36 0.55 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.09 1.15 6.95 -51.93 -0.36 0.79 16 38 H 0.09 1.27 6.40 -51.93 -0.33 0.93 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.98 7.91 -51.93 -0.41 0.57 16 42 H 0.14 1.77 7.91 -52.49 -0.41 1.35 16 43 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 46 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.10 1.37 5.87 -51.93 -0.30 1.06 16 48 H 0.08 1.08 7.14 -51.93 -0.37 0.71 16 LS Contribution 397.70 15.07 5.99 5.99 Total: -1.00 -37.96 397.70 -8.73 -46.69 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.02 Total: 1.58 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -3.75 Total: -1.49 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.63 Total: -56.60 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.96 -8.73 -46.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361961280.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.755 kcal (2) G-P(sol) polarization free energy of solvation -37.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds