Wall clock time and date at job start Wed Apr 1 2020 03:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81401 * 109.46716 * 2 1 4 4 O 1.42100 * 109.46742 * 63.61796 * 3 2 1 5 5 C 1.81403 * 102.99936 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47400 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47330 * 177.98464 * 6 5 3 8 8 C 1.36737 * 127.13970 * 87.84134 * 7 6 5 9 9 C 1.50707 * 126.34395 * 359.94825 * 8 7 6 10 10 C 1.52993 * 109.47093 * 119.99956 * 9 8 7 11 11 C 1.53003 * 109.46719 * 239.99776 * 9 8 7 12 12 N 1.30287 * 107.30802 * 179.97438 * 8 7 6 13 13 N 1.28526 * 110.05467 * 359.97438 * 12 8 7 14 14 C 1.31214 * 109.86003 * 359.74882 * 13 12 8 15 15 N 1.38578 * 126.47438 * 180.25918 * 14 13 12 16 16 C 1.46899 * 111.00092 * 295.81401 * 15 14 13 17 17 C 1.46900 * 111.00431 * 59.76686 * 15 14 13 18 18 H 1.09008 * 109.47140 * 300.00173 * 17 15 14 19 19 C 1.53001 * 109.47356 * 59.99650 * 17 15 14 20 20 C 1.50700 * 109.47481 * 180.02562 * 17 15 14 21 21 H 1.07997 * 119.99924 * 359.97438 * 20 17 15 22 22 C 1.37873 * 119.99847 * 180.02562 * 20 17 15 23 23 N 1.31519 * 120.00354 * 359.97438 * 22 20 17 24 24 Si 1.86801 * 119.99795 * 180.02562 * 22 20 17 25 25 H 1.48502 * 109.47390 * 89.99699 * 24 22 20 26 26 H 1.48504 * 109.47233 * 209.99668 * 24 22 20 27 27 H 1.48502 * 109.47087 * 329.99513 * 24 22 20 28 28 H 1.09002 * 109.47151 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47711 * 299.99757 * 1 2 3 30 30 H 1.09005 * 109.47577 * 59.99583 * 1 2 3 31 31 H 1.09006 * 109.47217 * 240.00791 * 2 1 3 32 32 H 1.08999 * 109.47208 * 120.00199 * 2 1 3 33 33 H 1.09012 * 109.46914 * 60.00017 * 5 3 2 34 34 H 1.09005 * 109.47392 * 300.00557 * 5 3 2 35 35 H 1.09004 * 109.47043 * 297.98713 * 6 5 3 36 36 H 1.09003 * 109.46721 * 57.98519 * 6 5 3 37 37 H 1.08997 * 109.47063 * 359.97438 * 9 8 7 38 38 H 1.09003 * 109.47226 * 180.02562 * 10 9 8 39 39 H 1.09004 * 109.47175 * 299.99620 * 10 9 8 40 40 H 1.08997 * 109.47625 * 59.99783 * 10 9 8 41 41 H 1.08999 * 109.47455 * 60.00103 * 11 9 8 42 42 H 1.09003 * 109.46634 * 180.02562 * 11 9 8 43 43 H 1.08997 * 109.47042 * 299.99631 * 11 9 8 44 44 H 1.08990 * 109.47478 * 66.38811 * 16 15 14 45 45 H 1.08999 * 109.47182 * 186.39766 * 16 15 14 46 46 H 1.09003 * 109.46640 * 306.38973 * 16 15 14 47 47 H 1.09005 * 109.47514 * 300.00752 * 19 17 15 48 48 H 1.09004 * 109.46961 * 60.00471 * 19 17 15 49 49 H 1.08997 * 109.47672 * 180.02562 * 19 17 15 50 50 H 0.97001 * 120.00018 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1345 1.7103 0.0000 4 8 1.7311 2.3552 1.2002 5 6 3.9370 1.5060 0.0008 6 6 4.6063 2.8818 0.0002 7 7 6.0612 2.7171 0.0494 8 6 6.9112 2.5662 -1.0109 9 6 6.5257 2.5361 -2.4675 10 6 7.2291 3.6772 -3.2049 11 6 6.9462 1.1980 -3.0788 12 7 8.1162 2.4526 -0.5285 13 7 8.0856 2.5215 0.7545 14 6 6.8499 2.6895 1.1626 15 7 6.4256 2.8120 2.4761 16 6 6.6845 1.5782 3.2302 17 6 7.0550 3.9687 3.1271 18 1 8.1380 3.8449 3.1198 19 6 6.6826 5.2451 2.3702 20 6 6.5710 4.0689 4.5507 21 1 5.8660 3.3459 4.9335 22 6 7.0275 5.0842 5.3642 23 7 7.8858 5.9650 4.8979 24 14 6.4281 5.2080 7.1291 25 1 7.3308 4.4290 8.0143 26 1 6.4267 6.6313 7.5527 27 1 5.0503 4.6621 7.2233 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 4.2405 0.9543 -0.8891 34 1 4.2398 0.9545 0.8910 35 1 4.3319 3.4189 -0.9077 36 1 4.2750 3.4473 0.8712 37 1 5.4461 2.6541 -2.5601 38 1 6.9499 3.6557 -4.2583 39 1 6.9295 4.6305 -2.7694 40 1 8.3087 3.5588 -3.1123 41 1 6.4451 0.3850 -2.5534 42 1 6.6678 1.1764 -4.1324 43 1 8.0258 1.0796 -2.9862 44 1 7.7600 1.4284 3.3236 45 1 6.2413 1.6592 4.2227 46 1 6.2441 0.7314 2.7037 47 1 7.0330 5.1724 1.3406 48 1 5.5996 5.3690 2.3775 49 1 7.1500 6.1033 2.8529 50 1 8.2072 6.6791 5.4703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417532343.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:36 Heat of formation + Delta-G solvation = 14.973446 kcal Electronic energy + Delta-G solvation = -29394.655067 eV Core-core repulsion = 25584.243155 eV Total energy + Delta-G solvation = -3810.411912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.99069 -38.94326 -36.96847 -36.84395 -36.10622 -34.87398 -33.60365 -31.70996 -31.48270 -30.16645 -27.94949 -27.58616 -26.30882 -25.69988 -24.40490 -24.03965 -23.20433 -21.24846 -20.52640 -18.68567 -18.50258 -18.12236 -17.50817 -16.99424 -16.70288 -16.43767 -16.09363 -15.98179 -15.67835 -15.37869 -15.20576 -15.09678 -14.99235 -14.30306 -13.99935 -13.95051 -13.79935 -13.67045 -13.37920 -13.15360 -13.03156 -12.92665 -12.88269 -12.80631 -12.66422 -12.54185 -12.34282 -12.30226 -12.25454 -12.16195 -12.07932 -12.03642 -11.93726 -11.44712 -11.39017 -11.15671 -10.88183 -10.65808 -9.91847 -9.60883 -9.30511 -8.22434 -6.37071 0.41414 0.79181 1.36796 1.38534 1.42953 1.50392 1.66358 1.85439 2.34996 2.80479 2.97228 3.09365 3.36744 3.55447 3.63872 3.89012 4.03161 4.04400 4.16439 4.21871 4.25361 4.29528 4.38724 4.44445 4.51465 4.58897 4.61419 4.67910 4.74749 4.78571 4.86499 4.91135 4.92554 4.95753 5.04496 5.05839 5.06156 5.10901 5.15651 5.25921 5.26944 5.45062 5.48147 5.53536 5.60067 5.84686 5.92394 6.06873 6.57880 6.72441 7.32043 7.78870 8.84879 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.008476 B = 0.004307 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3302.725980 B = 6499.777548 C = 8965.327170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.450 4.450 3 S 1.321 4.679 4 O -0.913 6.913 5 C -0.465 4.465 6 C 0.121 3.879 7 N -0.461 5.461 8 C 0.191 3.809 9 C -0.003 4.003 10 C -0.141 4.141 11 C -0.136 4.136 12 N -0.329 5.329 13 N -0.363 5.363 14 C 0.355 3.645 15 N -0.472 5.472 16 C 0.059 3.941 17 C 0.237 3.763 18 H -0.028 1.028 19 C -0.109 4.109 20 C -0.528 4.528 21 H 0.065 0.935 22 C 0.016 3.984 23 N -0.918 5.918 24 Si 0.968 3.032 25 H -0.273 1.273 26 H -0.279 1.279 27 H -0.268 1.268 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.099 0.901 31 H 0.161 0.839 32 H 0.064 0.936 33 H 0.164 0.836 34 H 0.064 0.936 35 H 0.152 0.848 36 H 0.072 0.928 37 H 0.131 0.869 38 H 0.105 0.895 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.057 0.943 42 H 0.104 0.896 43 H 0.041 0.959 44 H 0.018 0.982 45 H 0.083 0.917 46 H 0.063 0.937 47 H 0.002 0.998 48 H 0.035 0.965 49 H 0.069 0.931 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.378 -11.521 -23.311 30.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.588 4.588 3 S 1.519 4.481 4 O -0.908 6.908 5 C -0.601 4.601 6 C -0.002 4.002 7 N -0.154 5.154 8 C -0.078 4.078 9 C -0.024 4.024 10 C -0.199 4.199 11 C -0.194 4.194 12 N -0.168 5.168 13 N -0.206 5.206 14 C -0.003 4.003 15 N -0.198 5.198 16 C -0.089 4.089 17 C 0.131 3.869 18 H -0.010 1.010 19 C -0.167 4.167 20 C -0.566 4.566 21 H 0.083 0.917 22 C -0.184 4.184 23 N -0.557 5.557 24 Si 0.793 3.207 25 H -0.198 1.198 26 H -0.204 1.204 27 H -0.193 1.193 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.118 0.882 31 H 0.179 0.821 32 H 0.083 0.917 33 H 0.182 0.818 34 H 0.083 0.917 35 H 0.170 0.830 36 H 0.090 0.910 37 H 0.149 0.851 38 H 0.124 0.876 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.123 0.877 43 H 0.060 0.940 44 H 0.037 0.963 45 H 0.102 0.898 46 H 0.082 0.918 47 H 0.021 0.979 48 H 0.054 0.946 49 H 0.088 0.912 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.800 -10.601 -23.144 29.447 hybrid contribution 0.682 -0.746 3.709 3.844 sum -14.118 -11.347 -19.436 26.568 Atomic orbital electron populations 1.21481 0.91691 1.03941 1.02969 1.27577 1.04210 1.18295 1.08747 1.69582 0.82418 0.86917 1.09168 1.93083 1.76795 1.67349 1.53616 1.28207 1.21594 1.01236 1.09020 1.21661 0.74506 0.97544 1.06472 1.46607 1.09641 1.53861 1.05259 1.25841 0.85895 1.02333 0.93708 1.20021 1.03238 0.98802 0.80353 1.21825 1.00274 0.96173 1.01624 1.21801 1.01392 0.93870 1.02327 1.73794 1.20577 1.20798 1.01672 1.74579 1.18332 1.22111 1.05584 1.22656 0.86151 1.02053 0.89448 1.59115 1.58160 1.06525 0.95980 1.22118 0.99055 0.88880 0.98847 1.19060 0.90460 0.84630 0.92735 1.00991 1.21534 0.99096 1.00872 0.95212 1.21296 1.26876 1.13043 0.95391 0.91667 1.25755 0.94806 0.94824 1.02976 1.70035 1.32040 1.15932 1.37700 0.85402 0.78785 0.77525 0.79013 1.19837 1.20411 1.19282 0.90496 0.94952 0.88212 0.82082 0.91704 0.81835 0.91727 0.83047 0.90955 0.85078 0.87618 0.93669 0.93874 0.92372 0.87733 0.94001 0.96288 0.89802 0.91785 0.97873 0.94619 0.91197 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.92 71.98 0.71 -0.74 16 2 C -0.45 -4.53 6.64 71.98 0.48 -4.05 16 3 S 1.32 17.92 13.16 -56.49 -0.74 17.18 16 4 O -0.91 -28.83 18.14 -148.98 -2.70 -31.54 16 5 C -0.47 -7.91 6.25 71.98 0.45 -7.46 16 6 C 0.12 2.90 5.85 86.38 0.51 3.41 16 7 N -0.46 -15.30 2.81 -514.86 -1.45 -16.75 16 8 C 0.19 5.80 6.58 137.64 0.91 6.71 16 9 C 0.00 -0.06 3.29 -11.54 -0.04 -0.09 16 10 C -0.14 -2.31 9.17 71.98 0.66 -1.65 16 11 C -0.14 -1.80 9.18 71.98 0.66 -1.14 16 12 N -0.33 -13.52 12.18 -49.54 -0.60 -14.12 16 13 N -0.36 -17.60 12.14 -58.01 -0.70 -18.30 16 14 C 0.35 15.78 5.02 260.11 1.31 17.09 16 15 N -0.47 -22.81 4.66 -711.00 -3.31 -26.12 16 16 C 0.06 2.61 9.13 127.69 1.17 3.78 16 17 C 0.24 13.34 2.00 44.17 0.09 13.43 16 18 H -0.03 -1.79 8.09 -2.38 -0.02 -1.81 16 19 C -0.11 -5.94 8.84 71.98 0.64 -5.30 16 20 C -0.53 -30.56 7.95 25.60 0.20 -30.36 16 21 H 0.07 3.70 6.40 -2.91 -0.02 3.68 16 22 C 0.02 0.92 5.30 84.65 0.45 1.36 16 23 N -0.92 -55.26 11.32 21.45 0.24 -55.02 16 24 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 25 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 27 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.16 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.16 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.15 1.90 7.33 -2.39 -0.02 1.88 16 36 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.13 0.96 7.00 -2.39 -0.02 0.94 16 38 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.04 0.84 8.14 -2.38 -0.02 0.83 16 40 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.04 0.79 8.14 -2.39 -0.02 0.78 16 44 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 3.73 6.32 -2.39 -0.02 3.72 16 46 H 0.06 2.46 8.10 -2.39 -0.02 2.44 16 47 H 0.00 0.12 7.22 -2.38 -0.02 0.10 16 48 H 0.03 1.86 8.14 -2.38 -0.02 1.84 16 49 H 0.07 4.12 6.07 -2.39 -0.01 4.11 16 50 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -94.84 415.49 1.84 -92.99 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.90 Total: 9.42 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 8.19 Total: -5.03 kcal Atomic # 7 Polarization: -124.48 SS G_CDS: -5.82 Total: -130.31 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -2.70 Total: -31.54 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: 17.92 SS G_CDS: -0.74 Total: 17.18 kcal Total: -94.84 1.84 -92.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417532343.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.967 kcal (2) G-P(sol) polarization free energy of solvation -94.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds