Wall clock time and date at job start Wed Apr 1 2020 03:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81400 * 109.47593 * 2 1 4 4 O 1.42101 * 109.46639 * 296.38968 * 3 2 1 5 5 C 1.81395 * 103.00233 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47372 * 179.97438 * 5 3 2 7 7 N 1.46495 * 109.47388 * 177.82724 * 6 5 3 8 8 C 1.36742 * 127.13510 * 83.24427 * 7 6 5 9 9 C 1.50700 * 126.34487 * 0.02562 * 8 7 6 10 10 C 1.53006 * 109.46731 * 119.71367 * 9 8 7 11 11 C 1.52996 * 109.46999 * 239.70997 * 9 8 7 12 12 N 1.30299 * 107.30202 * 179.75728 * 8 7 6 13 13 N 1.28518 * 110.05667 * 0.24255 * 12 8 7 14 14 C 1.31219 * 109.86186 * 0.02562 * 13 12 8 15 15 N 1.38581 * 126.47646 * 180.02562 * 14 13 12 16 16 C 1.46894 * 111.00171 * 257.63964 * 15 14 13 17 17 C 1.46903 * 110.99742 * 21.58884 * 15 14 13 18 18 H 1.09002 * 109.47525 * 300.00162 * 17 15 14 19 19 C 1.53001 * 109.46981 * 60.00173 * 17 15 14 20 20 C 1.50702 * 109.47065 * 179.97438 * 17 15 14 21 21 H 1.07996 * 120.00219 * 0.02562 * 20 17 15 22 22 C 1.37876 * 120.00028 * 180.02562 * 20 17 15 23 23 N 1.31515 * 119.99953 * 180.02562 * 22 20 17 24 24 Si 1.86801 * 120.00043 * 359.97438 * 22 20 17 25 25 H 1.48505 * 109.46635 * 90.00429 * 24 22 20 26 26 H 1.48492 * 109.47502 * 210.00212 * 24 22 20 27 27 H 1.48494 * 109.47340 * 330.00880 * 24 22 20 28 28 H 1.08991 * 109.47484 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46986 * 300.00292 * 1 2 3 30 30 H 1.08996 * 109.46729 * 59.99324 * 1 2 3 31 31 H 1.09004 * 109.46986 * 239.99708 * 2 1 3 32 32 H 1.09001 * 109.47229 * 120.00151 * 2 1 3 33 33 H 1.09005 * 109.46926 * 59.99982 * 5 3 2 34 34 H 1.09002 * 109.47101 * 300.00436 * 5 3 2 35 35 H 1.08997 * 109.46534 * 57.82922 * 6 5 3 36 36 H 1.08994 * 109.47190 * 297.83161 * 6 5 3 37 37 H 1.08991 * 109.47137 * 359.71533 * 9 8 7 38 38 H 1.08996 * 109.46848 * 299.99763 * 10 9 8 39 39 H 1.08996 * 109.46965 * 179.97438 * 10 9 8 40 40 H 1.09003 * 109.46839 * 60.00206 * 10 9 8 41 41 H 1.09003 * 109.47796 * 300.00545 * 11 9 8 42 42 H 1.09006 * 109.47388 * 60.00299 * 11 9 8 43 43 H 1.09005 * 109.47149 * 180.02562 * 11 9 8 44 44 H 1.08997 * 109.47505 * 66.50211 * 16 15 14 45 45 H 1.08999 * 109.47484 * 186.50879 * 16 15 14 46 46 H 1.09004 * 109.46948 * 306.49884 * 16 15 14 47 47 H 1.09003 * 109.47071 * 179.97438 * 19 17 15 48 48 H 1.09003 * 109.46999 * 299.99757 * 19 17 15 49 49 H 1.09000 * 109.47494 * 60.00238 * 19 17 15 50 50 H 0.97003 * 120.00100 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.7313 2.3552 -1.2002 5 6 3.9372 1.5057 0.0008 6 6 4.6067 2.8815 0.0002 7 7 6.0614 2.7168 0.0532 8 6 6.9039 2.4780 -0.9970 9 6 6.5087 2.3332 -2.4440 10 6 7.2060 3.4133 -3.2736 11 6 6.9267 0.9515 -2.9510 12 7 8.1124 2.4046 -0.5153 13 7 8.0903 2.5743 0.7584 14 6 6.8563 2.7662 1.1612 15 7 6.4397 2.9849 2.4647 16 6 5.8549 1.7672 3.0418 17 6 7.5455 3.4819 3.2943 18 1 8.3514 2.7481 3.3034 19 6 8.0632 4.8009 2.7170 20 6 7.0555 3.7081 4.7014 21 1 6.0259 3.5027 4.9543 22 6 7.9218 4.1772 5.6660 23 7 7.4943 4.3741 6.8941 24 14 9.7030 4.5319 5.2290 25 1 9.8315 5.9421 4.7815 26 1 10.5589 4.3113 6.4222 27 1 10.1345 3.6245 4.1356 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 4.2407 0.9540 -0.8890 34 1 4.2399 0.9542 0.8910 35 1 4.2732 3.4480 0.8697 36 1 4.3346 3.4175 -0.9089 37 1 5.4285 2.4434 -2.5384 38 1 6.9082 4.3976 -2.9124 39 1 6.9205 3.3083 -4.3203 40 1 8.2863 3.3030 -3.1792 41 1 8.0070 0.8412 -2.8566 42 1 6.4300 0.1819 -2.3600 43 1 6.6413 0.8469 -3.9978 44 1 6.6292 1.0075 3.1484 45 1 5.4326 1.9954 4.0204 46 1 5.0688 1.3950 2.3847 47 1 8.8834 5.1700 3.3328 48 1 8.4175 4.6377 1.6991 49 1 7.2574 5.5348 2.7080 50 1 8.1039 4.7038 7.5728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417532345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:42 Heat of formation + Delta-G solvation = 54.674189 kcal Electronic energy + Delta-G solvation = -29370.902216 eV Core-core repulsion = 25562.211858 eV Total energy + Delta-G solvation = -3808.690359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.183 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.69057 -37.46809 -36.10621 -35.90419 -35.18596 -33.15097 -32.73213 -30.79731 -30.23696 -28.96025 -27.31488 -25.60051 -24.92647 -24.53500 -23.54333 -23.15340 -21.59911 -19.98332 -19.16240 -17.96328 -17.34378 -16.70450 -16.17244 -15.83581 -15.71422 -15.35512 -15.21524 -14.89701 -14.67378 -14.47492 -14.26040 -13.88863 -13.42723 -13.26497 -13.10271 -13.03674 -12.70919 -12.68890 -12.36010 -12.29823 -12.14016 -12.03470 -11.81355 -11.69113 -11.58503 -11.39042 -11.18819 -11.14335 -11.09301 -10.72101 -10.69120 -10.48892 -10.22639 -10.05447 -9.86845 -9.50655 -9.38349 -8.77149 -8.61672 -8.60929 -7.69122 -6.14412 -4.15336 0.99185 2.07398 2.17541 2.57275 3.23630 3.29593 3.37635 3.40726 3.47515 4.27935 4.31845 4.35154 4.38406 4.44384 4.51319 4.59902 4.63711 4.94928 4.96615 5.00123 5.02968 5.12658 5.19420 5.36691 5.38742 5.47328 5.48276 5.52043 5.59697 5.66932 5.70045 5.72316 5.81130 5.95228 6.02373 6.08557 6.20198 6.24982 6.42440 6.46031 6.51394 6.63240 6.86522 6.97028 7.15479 7.44418 7.62317 7.89745 8.48724 8.85884 9.18469 9.46784 10.97054 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.010380 B = 0.003887 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.723028 B = 7201.897487 C = 9306.060375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.452 4.452 3 S 1.259 4.741 4 O -0.842 6.842 5 C -0.476 4.476 6 C 0.135 3.865 7 N -0.474 5.474 8 C 0.161 3.839 9 C -0.001 4.001 10 C -0.140 4.140 11 C -0.139 4.139 12 N -0.282 5.282 13 N -0.321 5.321 14 C 0.378 3.622 15 N -0.451 5.451 16 C 0.039 3.961 17 C 0.199 3.801 18 H 0.024 0.976 19 C -0.148 4.148 20 C -0.516 4.516 21 H 0.086 0.914 22 C 0.079 3.921 23 N -0.894 5.894 24 Si 0.879 3.121 25 H -0.278 1.278 26 H -0.296 1.296 27 H -0.261 1.261 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.128 0.872 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.033 0.967 45 H 0.102 0.898 46 H 0.049 0.951 47 H 0.046 0.954 48 H 0.039 0.961 49 H 0.054 0.946 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.662 -8.064 -15.073 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.590 4.590 3 S 1.456 4.544 4 O -0.837 6.837 5 C -0.612 4.612 6 C 0.010 3.990 7 N -0.170 5.170 8 C -0.107 4.107 9 C -0.022 4.022 10 C -0.199 4.199 11 C -0.197 4.197 12 N -0.121 5.121 13 N -0.165 5.165 14 C 0.022 3.978 15 N -0.176 5.176 16 C -0.108 4.108 17 C 0.094 3.906 18 H 0.042 0.958 19 C -0.205 4.205 20 C -0.554 4.554 21 H 0.104 0.896 22 C -0.124 4.124 23 N -0.532 5.532 24 Si 0.709 3.291 25 H -0.204 1.204 26 H -0.224 1.224 27 H -0.186 1.186 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.138 0.862 33 H 0.111 0.889 34 H 0.146 0.854 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.051 0.949 45 H 0.121 0.879 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.073 0.927 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.989 -6.963 -14.812 20.288 hybrid contribution 0.883 -1.284 -1.825 2.400 sum -11.106 -8.248 -16.637 21.637 Atomic orbital electron populations 1.21362 0.91832 1.03217 1.02830 1.27563 1.04073 1.19666 1.07668 1.71082 0.84592 0.87066 1.11690 1.93117 1.75435 1.63872 1.51302 1.28300 1.20930 1.03196 1.08751 1.21262 0.76746 0.95283 1.05711 1.46245 1.08161 1.55800 1.06807 1.24504 0.87283 1.06929 0.91935 1.19459 1.00097 0.97494 0.85111 1.21795 1.01841 0.97492 0.98728 1.21787 1.03020 0.94491 1.00423 1.73896 1.17673 1.17579 1.02998 1.74762 1.16403 1.21439 1.03899 1.23047 0.86286 0.99283 0.89163 1.58911 1.34350 1.28888 0.95450 1.22443 0.98059 0.88971 1.01288 1.19751 0.86771 0.92664 0.91438 0.95802 1.22174 1.00056 0.99287 0.98998 1.20861 0.99092 1.45427 0.90019 0.89570 1.24799 0.98274 0.94584 0.94759 1.69852 1.35842 1.45430 1.02037 0.86972 0.85413 0.79292 0.77468 1.20446 1.22354 1.18560 0.91501 0.91084 0.92230 0.89771 0.86183 0.88927 0.85417 0.86507 0.88864 0.90367 0.92565 0.91815 0.91158 0.91095 0.93030 0.91840 0.94868 0.87918 0.93248 0.93510 0.94221 0.92736 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.79 9.92 37.16 0.37 -0.42 16 2 C -0.45 -2.68 6.64 37.16 0.25 -2.44 16 3 S 1.26 8.81 13.16 -107.50 -1.41 7.40 16 4 O -0.84 -10.76 18.14 -35.23 -0.64 -11.40 16 5 C -0.48 -4.10 6.19 37.16 0.23 -3.87 16 6 C 0.13 1.53 5.60 -4.04 -0.02 1.51 16 7 N -0.47 -7.36 2.81 -114.09 -0.32 -7.68 16 8 C 0.16 2.55 6.58 -154.01 -1.01 1.53 16 9 C 0.00 -0.01 3.30 -91.77 -0.30 -0.31 16 10 C -0.14 -1.53 9.18 37.16 0.34 -1.19 16 11 C -0.14 -1.46 9.17 37.16 0.34 -1.11 16 12 N -0.28 -5.48 12.18 32.99 0.40 -5.08 16 13 N -0.32 -6.94 10.08 30.32 0.31 -6.63 16 14 C 0.38 7.25 6.00 -318.87 -1.91 5.34 16 15 N -0.45 -8.90 4.61 -176.08 -0.81 -9.71 16 16 C 0.04 0.65 9.14 60.06 0.55 1.20 16 17 C 0.20 4.71 1.32 -68.86 -0.09 4.62 16 18 H 0.02 0.62 6.97 -51.93 -0.36 0.26 16 19 C -0.15 -3.45 8.50 37.16 0.32 -3.14 16 20 C -0.52 -13.54 8.54 -34.44 -0.29 -13.83 16 21 H 0.09 2.34 6.64 -52.49 -0.35 1.99 16 22 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 23 N -0.89 -26.00 13.96 55.43 0.77 -25.23 16 24 Si 0.88 21.92 24.37 -169.99 -4.14 17.77 16 25 H -0.28 -6.81 6.87 56.52 0.39 -6.43 16 26 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.26 -6.53 6.53 56.52 0.37 -6.16 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.59 8.14 -51.92 -0.42 0.16 16 32 H 0.12 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.13 1.00 5.80 -51.92 -0.30 0.70 16 35 H 0.12 1.23 8.08 -51.93 -0.42 0.81 16 36 H 0.09 1.00 7.54 -51.93 -0.39 0.61 16 37 H 0.08 0.84 7.12 -51.93 -0.37 0.47 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.10 1.76 6.33 -51.93 -0.33 1.44 16 46 H 0.05 0.61 5.49 -51.93 -0.29 0.32 16 47 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 48 H 0.04 0.91 6.27 -51.93 -0.33 0.58 16 49 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 50 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 401.13 15.07 6.04 6.04 Total: -1.00 -36.61 401.13 -9.55 -46.16 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -8.40 Total: -1.64 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -1.34 Total: -10.00 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.35 Total: -54.33 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -0.64 Total: -11.40 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.14 Total: 17.77 kcal Atomic # 16 Polarization: 8.81 SS G_CDS: -1.41 Total: 7.40 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.61 -9.55 -46.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417532345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.831 kcal (2) G-P(sol) polarization free energy of solvation -36.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds