Wall clock time and date at job start Wed Apr 1 2020 03:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81400 * 109.47593 * 2 1 4 4 O 1.42101 * 109.46639 * 296.38968 * 3 2 1 5 5 C 1.81395 * 103.00233 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47372 * 179.97438 * 5 3 2 7 7 N 1.46495 * 109.47388 * 177.82724 * 6 5 3 8 8 C 1.36742 * 127.13510 * 83.24427 * 7 6 5 9 9 C 1.50700 * 126.34487 * 0.02562 * 8 7 6 10 10 C 1.53006 * 109.46731 * 119.71367 * 9 8 7 11 11 C 1.52996 * 109.46999 * 239.70997 * 9 8 7 12 12 N 1.30299 * 107.30202 * 179.75728 * 8 7 6 13 13 N 1.28518 * 110.05667 * 0.24255 * 12 8 7 14 14 C 1.31219 * 109.86186 * 0.02562 * 13 12 8 15 15 N 1.38581 * 126.47646 * 180.02562 * 14 13 12 16 16 C 1.46894 * 111.00171 * 257.63964 * 15 14 13 17 17 C 1.46903 * 110.99742 * 21.58884 * 15 14 13 18 18 H 1.09002 * 109.47525 * 300.00162 * 17 15 14 19 19 C 1.53001 * 109.46981 * 60.00173 * 17 15 14 20 20 C 1.50702 * 109.47065 * 179.97438 * 17 15 14 21 21 H 1.07996 * 120.00219 * 0.02562 * 20 17 15 22 22 C 1.37876 * 120.00028 * 180.02562 * 20 17 15 23 23 N 1.31515 * 119.99953 * 180.02562 * 22 20 17 24 24 Si 1.86801 * 120.00043 * 359.97438 * 22 20 17 25 25 H 1.48505 * 109.46635 * 90.00429 * 24 22 20 26 26 H 1.48492 * 109.47502 * 210.00212 * 24 22 20 27 27 H 1.48494 * 109.47340 * 330.00880 * 24 22 20 28 28 H 1.08991 * 109.47484 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46986 * 300.00292 * 1 2 3 30 30 H 1.08996 * 109.46729 * 59.99324 * 1 2 3 31 31 H 1.09004 * 109.46986 * 239.99708 * 2 1 3 32 32 H 1.09001 * 109.47229 * 120.00151 * 2 1 3 33 33 H 1.09005 * 109.46926 * 59.99982 * 5 3 2 34 34 H 1.09002 * 109.47101 * 300.00436 * 5 3 2 35 35 H 1.08997 * 109.46534 * 57.82922 * 6 5 3 36 36 H 1.08994 * 109.47190 * 297.83161 * 6 5 3 37 37 H 1.08991 * 109.47137 * 359.71533 * 9 8 7 38 38 H 1.08996 * 109.46848 * 299.99763 * 10 9 8 39 39 H 1.08996 * 109.46965 * 179.97438 * 10 9 8 40 40 H 1.09003 * 109.46839 * 60.00206 * 10 9 8 41 41 H 1.09003 * 109.47796 * 300.00545 * 11 9 8 42 42 H 1.09006 * 109.47388 * 60.00299 * 11 9 8 43 43 H 1.09005 * 109.47149 * 180.02562 * 11 9 8 44 44 H 1.08997 * 109.47505 * 66.50211 * 16 15 14 45 45 H 1.08999 * 109.47484 * 186.50879 * 16 15 14 46 46 H 1.09004 * 109.46948 * 306.49884 * 16 15 14 47 47 H 1.09003 * 109.47071 * 179.97438 * 19 17 15 48 48 H 1.09003 * 109.46999 * 299.99757 * 19 17 15 49 49 H 1.09000 * 109.47494 * 60.00238 * 19 17 15 50 50 H 0.97003 * 120.00100 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.7313 2.3552 -1.2002 5 6 3.9372 1.5057 0.0008 6 6 4.6067 2.8815 0.0002 7 7 6.0614 2.7168 0.0532 8 6 6.9039 2.4780 -0.9970 9 6 6.5087 2.3332 -2.4440 10 6 7.2060 3.4133 -3.2736 11 6 6.9267 0.9515 -2.9510 12 7 8.1124 2.4046 -0.5153 13 7 8.0903 2.5743 0.7584 14 6 6.8563 2.7662 1.1612 15 7 6.4397 2.9849 2.4647 16 6 5.8549 1.7672 3.0418 17 6 7.5455 3.4819 3.2943 18 1 8.3514 2.7481 3.3034 19 6 8.0632 4.8009 2.7170 20 6 7.0555 3.7081 4.7014 21 1 6.0259 3.5027 4.9543 22 6 7.9218 4.1772 5.6660 23 7 7.4943 4.3741 6.8941 24 14 9.7030 4.5319 5.2290 25 1 9.8315 5.9421 4.7815 26 1 10.5589 4.3113 6.4222 27 1 10.1345 3.6245 4.1356 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 4.2407 0.9540 -0.8890 34 1 4.2399 0.9542 0.8910 35 1 4.2732 3.4480 0.8697 36 1 4.3346 3.4175 -0.9089 37 1 5.4285 2.4434 -2.5384 38 1 6.9082 4.3976 -2.9124 39 1 6.9205 3.3083 -4.3203 40 1 8.2863 3.3030 -3.1792 41 1 8.0070 0.8412 -2.8566 42 1 6.4300 0.1819 -2.3600 43 1 6.6413 0.8469 -3.9978 44 1 6.6292 1.0075 3.1484 45 1 5.4326 1.9954 4.0204 46 1 5.0688 1.3950 2.3847 47 1 8.8834 5.1700 3.3328 48 1 8.4175 4.6377 1.6991 49 1 7.2574 5.5348 2.7080 50 1 8.1039 4.7038 7.5728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417532345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:40 Heat of formation + Delta-G solvation = 30.093595 kcal Electronic energy + Delta-G solvation = -29371.968111 eV Core-core repulsion = 25562.211858 eV Total energy + Delta-G solvation = -3809.756253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.183 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.04446 -39.06712 -37.07614 -36.85600 -36.26538 -34.69838 -33.60978 -32.21253 -31.70716 -30.34282 -28.15899 -27.34769 -26.21611 -25.77031 -24.52271 -24.06714 -23.12324 -21.27288 -20.55495 -19.02452 -18.57828 -18.11795 -17.55186 -16.94587 -16.82673 -16.52470 -16.36926 -15.86824 -15.73933 -15.42601 -15.32521 -15.16468 -15.06172 -14.49638 -14.23433 -14.09929 -13.85970 -13.79171 -13.54841 -13.35030 -13.10262 -13.06221 -12.92370 -12.80554 -12.73092 -12.56351 -12.39627 -12.28324 -12.24776 -12.13959 -12.08509 -12.03917 -11.53531 -11.49321 -11.39941 -11.20368 -10.93048 -10.73989 -10.36604 -9.26297 -9.22523 -8.29183 -6.31084 0.34492 0.78680 1.28922 1.34253 1.37301 1.47018 1.62129 1.83157 2.31406 2.72333 2.88697 3.07205 3.25963 3.46066 3.62258 3.70395 3.94251 4.03187 4.05217 4.13587 4.16726 4.21549 4.28836 4.33608 4.50826 4.54019 4.55195 4.58101 4.65335 4.70894 4.71566 4.83439 4.86432 4.91413 4.94820 4.95063 5.00732 5.05271 5.05832 5.15397 5.23660 5.25693 5.28879 5.31842 5.49475 5.68385 5.86480 6.18765 6.56389 6.73695 7.33121 7.79525 8.84949 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.010380 B = 0.003887 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.723028 B = 7201.897487 C = 9306.060375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.449 4.449 3 S 1.309 4.691 4 O -0.899 6.899 5 C -0.473 4.473 6 C 0.120 3.880 7 N -0.467 5.467 8 C 0.179 3.821 9 C -0.002 4.002 10 C -0.138 4.138 11 C -0.135 4.135 12 N -0.319 5.319 13 N -0.365 5.365 14 C 0.367 3.633 15 N -0.448 5.448 16 C 0.037 3.963 17 C 0.208 3.792 18 H -0.001 1.001 19 C -0.140 4.140 20 C -0.504 4.504 21 H 0.074 0.926 22 C 0.036 3.964 23 N -0.930 5.930 24 Si 0.922 3.078 25 H -0.270 1.270 26 H -0.293 1.293 27 H -0.267 1.267 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.149 0.851 33 H 0.091 0.909 34 H 0.139 0.861 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.048 0.952 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.092 0.908 44 H 0.018 0.982 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.037 0.963 48 H 0.039 0.961 49 H 0.058 0.942 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.277 -8.963 -16.677 23.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.588 4.588 3 S 1.507 4.493 4 O -0.894 6.894 5 C -0.608 4.608 6 C -0.002 4.002 7 N -0.161 5.161 8 C -0.090 4.090 9 C -0.023 4.023 10 C -0.196 4.196 11 C -0.193 4.193 12 N -0.158 5.158 13 N -0.209 5.209 14 C 0.009 3.991 15 N -0.173 5.173 16 C -0.109 4.109 17 C 0.101 3.899 18 H 0.017 0.983 19 C -0.197 4.197 20 C -0.543 4.543 21 H 0.092 0.908 22 C -0.163 4.163 23 N -0.570 5.570 24 Si 0.752 3.248 25 H -0.197 1.197 26 H -0.221 1.221 27 H -0.192 1.192 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.167 0.833 33 H 0.109 0.891 34 H 0.157 0.843 35 H 0.145 0.855 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.037 0.963 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.056 0.944 48 H 0.058 0.942 49 H 0.077 0.923 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.616 -7.854 -16.442 22.747 hybrid contribution 1.253 -1.116 -1.420 2.198 sum -12.363 -8.970 -17.862 23.502 Atomic orbital electron populations 1.21471 0.91721 1.03926 1.02999 1.27554 1.04193 1.18300 1.08769 1.70571 0.82464 0.87078 1.09222 1.93017 1.76386 1.66671 1.53363 1.28283 1.21774 1.01502 1.09238 1.21666 0.74427 0.97368 1.06764 1.46419 1.09568 1.54691 1.05431 1.25318 0.86447 1.03796 0.93389 1.19748 1.01230 0.98722 0.82583 1.21789 1.00788 0.96672 1.00324 1.21770 1.02014 0.93368 1.02145 1.73816 1.19734 1.19834 1.02382 1.74640 1.18186 1.22865 1.05226 1.22861 0.86580 1.00236 0.89390 1.58834 1.32495 1.30381 0.95555 1.22557 0.98665 0.87590 1.02083 1.19405 0.87260 0.92332 0.90911 0.98293 1.22060 0.99799 0.99124 0.98739 1.21045 0.98385 1.43614 0.91212 0.90824 1.25347 1.01079 0.95074 0.94812 1.69933 1.36970 1.47202 1.02880 0.86255 0.82323 0.79294 0.76970 1.19668 1.22075 1.19182 0.90573 0.89047 0.94074 0.90534 0.83301 0.89060 0.84289 0.85531 0.87953 0.88574 0.93311 0.88781 0.92642 0.92602 0.93145 0.88937 0.96315 0.88641 0.88559 0.94449 0.94180 0.92295 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.92 71.98 0.71 -0.59 16 2 C -0.45 -3.91 6.64 71.98 0.48 -3.43 16 3 S 1.31 14.90 13.16 -56.49 -0.74 14.15 16 4 O -0.90 -21.46 18.14 -148.98 -2.70 -24.16 16 5 C -0.47 -6.72 6.19 71.98 0.45 -6.28 16 6 C 0.12 2.45 5.60 86.38 0.48 2.94 16 7 N -0.47 -13.74 2.81 -514.86 -1.45 -15.18 16 8 C 0.18 5.45 6.58 137.64 0.91 6.35 16 9 C 0.00 -0.04 3.30 -11.54 -0.04 -0.08 16 10 C -0.14 -2.71 9.18 71.98 0.66 -2.05 16 11 C -0.13 -2.49 9.17 71.98 0.66 -1.83 16 12 N -0.32 -12.37 12.18 -49.53 -0.60 -12.98 16 13 N -0.37 -15.89 10.08 -58.00 -0.58 -16.47 16 14 C 0.37 13.83 6.00 260.11 1.56 15.39 16 15 N -0.45 -17.40 4.61 -710.99 -3.28 -20.67 16 16 C 0.04 1.20 9.14 127.69 1.17 2.37 16 17 C 0.21 9.88 1.32 44.17 0.06 9.94 16 18 H 0.00 -0.03 6.97 -2.39 -0.02 -0.05 16 19 C -0.14 -6.53 8.50 71.98 0.61 -5.91 16 20 C -0.50 -26.62 8.54 25.60 0.22 -26.40 16 21 H 0.07 4.02 6.64 -2.91 -0.02 4.01 16 22 C 0.04 2.03 5.45 84.65 0.46 2.49 16 23 N -0.93 -54.59 13.96 21.45 0.30 -54.29 16 24 Si 0.92 45.54 24.37 68.60 1.67 47.21 16 25 H -0.27 -12.92 6.87 99.48 0.68 -12.24 16 26 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 27 H -0.27 -13.33 6.53 99.48 0.65 -12.68 16 28 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.15 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.14 1.65 5.80 -2.39 -0.01 1.64 16 35 H 0.13 2.36 8.08 -2.39 -0.02 2.34 16 36 H 0.10 1.94 7.54 -2.39 -0.02 1.92 16 37 H 0.10 1.74 7.12 -2.39 -0.02 1.73 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.10 3.21 6.33 -2.39 -0.02 3.19 16 46 H 0.10 2.10 5.49 -2.38 -0.01 2.09 16 47 H 0.04 1.79 3.27 -2.39 -0.01 1.78 16 48 H 0.04 1.85 6.27 -2.39 -0.01 1.83 16 49 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 50 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -80.96 401.13 1.85 -79.11 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.84 Total: 10.38 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 8.39 Total: -7.11 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -5.61 Total: -119.59 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -2.70 Total: -24.16 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.67 Total: 47.21 kcal Atomic # 16 Polarization: 14.90 SS G_CDS: -0.74 Total: 14.15 kcal Total: -80.96 1.85 -79.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417532345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.207 kcal (2) G-P(sol) polarization free energy of solvation -80.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds