Wall clock time and date at job start Wed Apr 1 2020 04:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46894 * 110.99606 * 2 1 4 4 C 1.38497 * 110.99679 * 123.95436 * 2 1 3 5 5 N 1.31197 * 125.79218 * 303.81754 * 4 2 1 6 6 C 1.34388 * 109.30446 * 179.77746 * 5 4 2 7 7 C 1.34374 * 108.31966 * 0.37703 * 6 5 4 8 8 C 1.50697 * 126.52958 * 179.89270 * 7 6 5 9 9 N 1.46501 * 109.46831 * 94.68964 * 8 7 6 10 10 C 1.34780 * 119.99855 * 180.02562 * 9 8 7 11 11 O 1.21275 * 120.00019 * 0.02562 * 10 9 8 12 12 C 1.50708 * 119.99756 * 179.97438 * 10 9 8 13 13 H 1.08999 * 109.46783 * 60.00036 * 12 10 9 14 14 C 1.50692 * 109.47332 * 300.00030 * 12 10 9 15 15 H 1.08001 * 119.99938 * 333.07287 * 14 12 10 16 16 C 1.37878 * 120.00115 * 153.07246 * 14 12 10 17 17 N 1.31513 * 119.99905 * 6.59455 * 16 14 12 18 18 Si 1.86798 * 120.00036 * 186.59369 * 16 14 12 19 19 H 1.48503 * 109.47306 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.47156 * 300.00248 * 18 16 14 21 21 H 1.48499 * 109.47282 * 60.00175 * 18 16 14 22 22 C 1.50697 * 109.46732 * 179.97438 * 12 10 9 23 23 C 1.38238 * 119.99932 * 66.50041 * 22 12 10 24 24 C 1.38236 * 119.99880 * 179.78756 * 23 22 12 25 25 C 1.38238 * 119.99850 * 0.43403 * 24 23 22 26 26 C 1.38234 * 120.00277 * 359.81435 * 25 24 23 27 27 C 1.38233 * 119.99603 * 359.97438 * 26 25 24 28 28 N 1.36025 * 125.78943 * 123.83229 * 4 2 1 29 29 C 1.46503 * 126.49507 * 359.96502 * 28 4 2 30 30 H 1.09003 * 109.47117 * 296.04656 * 1 2 3 31 31 H 1.08997 * 109.46940 * 56.05256 * 1 2 3 32 32 H 1.09003 * 109.46728 * 176.04954 * 1 2 3 33 33 H 1.08999 * 109.47108 * 187.92674 * 3 2 1 34 34 H 1.09004 * 109.47385 * 307.92236 * 3 2 1 35 35 H 1.08995 * 109.47789 * 67.92357 * 3 2 1 36 36 H 1.08005 * 125.83864 * 180.23959 * 6 5 4 37 37 H 1.08999 * 109.47249 * 334.69433 * 8 7 6 38 38 H 1.08999 * 109.47838 * 214.69156 * 8 7 6 39 39 H 0.97001 * 119.99877 * 359.97438 * 9 8 7 40 40 H 0.96996 * 119.99589 * 355.77716 * 17 16 14 41 41 H 1.07996 * 119.99770 * 359.97438 * 23 22 12 42 42 H 1.07995 * 119.99930 * 180.27079 * 24 23 22 43 43 H 1.07998 * 119.99787 * 179.83638 * 25 24 23 44 44 H 1.07996 * 119.99922 * 179.97438 * 26 25 24 45 45 H 1.08009 * 119.99704 * 179.97438 * 27 26 25 46 46 H 1.08998 * 109.47055 * 274.59881 * 29 28 4 47 47 H 1.09003 * 109.46853 * 34.59830 * 29 28 4 48 48 H 1.09001 * 109.46960 * 154.59068 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9653 -0.7222 1.0725 5 7 1.6873 -0.5074 2.3366 6 6 2.3434 -1.4028 3.0941 7 6 3.0607 -2.1979 2.2823 8 6 3.9500 -3.3399 2.7018 9 7 3.1973 -4.5950 2.6348 10 6 3.7935 -5.7569 2.9680 11 8 4.9529 -5.7634 3.3237 12 6 3.0190 -7.0480 2.8995 13 1 2.6753 -7.2117 1.8782 14 6 1.8308 -6.9706 3.8231 15 1 1.8619 -6.3276 4.6903 16 6 0.7040 -7.7206 3.5611 17 7 0.7117 -8.5991 2.5824 18 14 -0.8337 -7.4891 4.5962 19 1 -1.8969 -8.4078 4.1158 20 1 -0.5241 -7.7909 6.0168 21 1 -1.3023 -6.0848 4.4793 22 6 3.9084 -8.1900 3.3189 23 6 4.3583 -8.2726 4.6234 24 6 5.1705 -9.3225 5.0091 25 6 5.5401 -10.2850 4.0882 26 6 5.0943 -10.1996 2.7825 27 6 4.2786 -9.1521 2.3979 28 7 2.8239 -1.7743 0.9940 29 6 3.3890 -2.3484 -0.2296 30 1 -0.3633 0.4513 0.9233 31 1 -0.3633 0.5739 -0.8525 32 1 -0.3633 -1.0253 -0.0708 33 1 3.0759 1.3459 -0.1417 34 1 1.5360 1.9370 -0.8107 35 1 1.7651 1.8491 0.9522 36 1 2.3030 -1.4703 4.1713 37 1 4.2937 -3.1766 3.7233 38 1 4.8095 -3.3956 2.0339 39 1 2.2697 -4.5897 2.3513 40 1 1.4881 -8.6763 2.0062 41 1 4.0729 -7.5185 5.3418 42 1 5.5185 -9.3894 6.0293 43 1 6.1768 -11.1039 4.3890 44 1 5.3834 -10.9514 2.0630 45 1 3.9306 -9.0851 1.3776 46 1 2.6936 -3.0788 -0.6431 47 1 3.5589 -1.5555 -0.9581 48 1 4.3351 -2.8378 0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417637241.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:52 Heat of formation + Delta-G solvation = 59.410420 kcal Electronic energy + Delta-G solvation = -29677.140240 eV Core-core repulsion = 25733.211309 eV Total energy + Delta-G solvation = -3943.928932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -42.15920 -39.30847 -37.89172 -37.24235 -34.40821 -33.99729 -33.84704 -30.92029 -30.04675 -29.96331 -27.90307 -27.41745 -27.10006 -25.67132 -24.07203 -23.56459 -21.66570 -21.07151 -20.65435 -19.82285 -19.53443 -17.54684 -17.20575 -16.33229 -16.23720 -15.85587 -15.61008 -15.33221 -14.65456 -14.63165 -14.50227 -14.11112 -13.91067 -13.83457 -13.63324 -13.14183 -13.00810 -12.87925 -12.79344 -12.60003 -12.46261 -12.45645 -12.23059 -12.11171 -11.99635 -11.96877 -11.58581 -10.99381 -10.86647 -10.32915 -10.23128 -10.21259 -10.15837 -9.63513 -9.10976 -9.05813 -8.95126 -8.63990 -8.53456 -8.29371 -8.04497 -7.67402 -6.58847 -4.34394 1.76261 2.26470 2.31380 2.41043 2.94338 3.35352 3.35530 3.53267 3.55006 3.67919 4.03967 4.38704 4.55450 4.70310 4.74577 4.74905 5.05231 5.06551 5.12999 5.15419 5.21741 5.26253 5.35465 5.41198 5.54858 5.63744 5.65297 5.67051 5.69849 5.77103 5.81313 6.05639 6.07868 6.14846 6.37430 6.43478 6.43930 6.44756 6.58255 6.69709 6.85001 6.93953 6.99172 7.26872 7.33322 7.35207 7.55898 7.79950 7.92714 7.94505 8.16211 8.20997 8.58782 9.04111 9.37468 10.80030 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.012300 B = 0.003112 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.836703 B = 8994.134364 C =10247.903167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.475 5.475 3 C 0.035 3.965 4 C 0.369 3.631 5 N -0.507 5.507 6 C 0.006 3.994 7 C -0.030 4.030 8 C 0.201 3.799 9 N -0.727 5.727 10 C 0.534 3.466 11 O -0.563 6.563 12 C 0.046 3.954 13 H 0.063 0.937 14 C -0.594 4.594 15 H 0.059 0.941 16 C 0.033 3.967 17 N -0.893 5.893 18 Si 1.067 2.933 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.285 1.285 22 C -0.019 4.019 23 C -0.078 4.078 24 C -0.132 4.132 25 C -0.146 4.146 26 C -0.129 4.129 27 C -0.127 4.127 28 N -0.438 5.438 29 C 0.078 3.922 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.045 0.955 36 H 0.173 0.827 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.406 0.594 40 H 0.273 0.727 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.088 0.912 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.236 13.253 -6.244 15.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.199 5.199 3 C -0.113 4.113 4 C 0.018 3.982 5 N -0.229 5.229 6 C -0.144 4.144 7 C -0.145 4.145 8 C 0.076 3.924 9 N -0.381 5.381 10 C 0.324 3.676 11 O -0.441 6.441 12 C 0.024 3.976 13 H 0.081 0.919 14 C -0.631 4.631 15 H 0.077 0.923 16 C -0.175 4.175 17 N -0.526 5.526 18 Si 0.894 3.106 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.020 4.020 23 C -0.096 4.096 24 C -0.151 4.151 25 C -0.164 4.164 26 C -0.147 4.147 27 C -0.146 4.146 28 N -0.123 5.123 29 C -0.065 4.065 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.190 0.810 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.241 0.759 40 H 0.084 0.916 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.097 0.903 47 H 0.107 0.893 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.239 12.995 -6.072 14.517 hybrid contribution 1.352 0.208 -0.023 1.368 sum 3.590 13.203 -6.095 14.978 Atomic orbital electron populations 1.22388 0.83745 1.03129 1.01794 1.58703 1.09972 1.14505 1.36707 1.22411 1.00620 0.86446 1.01808 1.20727 0.96320 0.91876 0.89307 1.70678 1.25421 1.26235 1.00547 1.22016 0.98048 0.94662 0.99690 1.21236 1.07236 1.02722 0.83266 1.19414 0.91522 0.79797 1.01700 1.46041 1.16162 1.05264 1.70614 1.21353 0.86466 0.85737 0.74056 1.90598 1.17975 1.87675 1.47871 1.18137 0.93358 0.86189 0.99877 0.91922 1.21539 0.97987 1.31438 1.12177 0.92316 1.25850 1.01381 0.91965 0.98269 1.70802 1.34261 1.30263 1.17321 0.83551 0.75289 0.76308 0.75424 1.20648 1.21190 1.21111 1.20096 0.92754 0.95991 0.93182 1.20795 0.95817 0.96926 0.96054 1.20990 0.99746 0.95654 0.98668 1.20824 1.02170 0.99422 0.93978 1.20878 0.99409 0.98372 0.96039 1.20953 0.98949 0.95754 0.98916 1.45330 1.35117 1.24840 1.06976 1.21997 0.99777 0.99924 0.84806 0.93399 0.90445 0.91085 0.91451 0.90361 0.93658 0.80963 0.89497 0.91580 0.75862 0.91569 0.86952 0.87385 0.87517 0.87418 0.87399 0.90282 0.89319 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 9.47 60.07 0.57 0.93 16 2 N -0.47 -5.16 4.98 -190.47 -0.95 -6.11 16 3 C 0.03 0.30 9.56 60.06 0.57 0.88 16 4 C 0.37 4.97 6.36 -319.61 -2.03 2.93 16 5 N -0.51 -7.63 11.05 -13.92 -0.15 -7.79 16 6 C 0.01 0.09 11.76 -17.80 -0.21 -0.12 16 7 C -0.03 -0.42 6.33 -81.34 -0.52 -0.93 16 8 C 0.20 2.97 5.90 -5.19 -0.03 2.94 16 9 N -0.73 -12.88 5.45 -61.47 -0.33 -13.21 16 10 C 0.53 11.43 7.04 -10.98 -0.08 11.35 16 11 O -0.56 -13.16 15.43 5.56 0.09 -13.07 16 12 C 0.05 1.06 1.94 -94.08 -0.18 0.88 16 13 H 0.06 1.50 6.64 -51.93 -0.34 1.16 16 14 C -0.59 -14.85 7.45 -34.44 -0.26 -15.11 16 15 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 16 C 0.03 0.85 5.45 -17.82 -0.10 0.75 16 17 N -0.89 -24.56 13.63 55.43 0.76 -23.81 16 18 Si 1.07 23.52 29.91 -169.99 -5.08 18.44 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 C -0.02 -0.45 4.16 -104.62 -0.44 -0.88 16 23 C -0.08 -1.76 8.33 -39.58 -0.33 -2.09 16 24 C -0.13 -2.63 10.05 -39.58 -0.40 -3.02 16 25 C -0.15 -2.71 10.05 -39.58 -0.40 -3.11 16 26 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 27 C -0.13 -2.74 9.49 -39.58 -0.38 -3.12 16 28 N -0.44 -5.64 3.20 -120.30 -0.39 -6.03 16 29 C 0.08 0.77 11.00 59.85 0.66 1.43 16 30 H 0.05 0.51 8.01 -51.93 -0.42 0.09 16 31 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.49 8.05 -51.93 -0.42 0.08 16 35 H 0.04 0.44 8.11 -51.93 -0.42 0.02 16 36 H 0.17 2.23 8.06 -52.48 -0.42 1.80 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.07 0.95 7.34 -51.93 -0.38 0.57 16 39 H 0.41 7.26 8.35 -40.82 -0.34 6.92 16 40 H 0.27 7.41 6.47 -40.82 -0.26 7.15 16 41 H 0.11 2.59 7.88 -52.49 -0.41 2.18 16 42 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 44 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 45 H 0.11 2.18 7.96 -52.48 -0.42 1.76 16 46 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.08 0.80 7.20 -51.93 -0.37 0.42 16 LS Contribution 404.20 15.07 6.09 6.09 Total: -1.00 -31.48 404.20 -11.13 -42.61 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -7.22 Total: 12.05 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -3.93 Total: -9.16 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -1.07 Total: -56.95 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.08 Total: 18.44 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.48 -11.13 -42.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417637241.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.018 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds