Wall clock time and date at job start Wed Apr 1 2020 04:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46894 * 110.99606 * 2 1 4 4 C 1.38497 * 110.99679 * 123.95436 * 2 1 3 5 5 N 1.31197 * 125.79218 * 303.81754 * 4 2 1 6 6 C 1.34388 * 109.30446 * 179.77746 * 5 4 2 7 7 C 1.34374 * 108.31966 * 0.37703 * 6 5 4 8 8 C 1.50697 * 126.52958 * 179.89270 * 7 6 5 9 9 N 1.46501 * 109.46831 * 94.68964 * 8 7 6 10 10 C 1.34780 * 119.99855 * 180.02562 * 9 8 7 11 11 O 1.21275 * 120.00019 * 0.02562 * 10 9 8 12 12 C 1.50708 * 119.99756 * 179.97438 * 10 9 8 13 13 H 1.08999 * 109.46783 * 60.00036 * 12 10 9 14 14 C 1.50692 * 109.47332 * 300.00030 * 12 10 9 15 15 H 1.08001 * 119.99938 * 333.07287 * 14 12 10 16 16 C 1.37878 * 120.00115 * 153.07246 * 14 12 10 17 17 N 1.31513 * 119.99905 * 6.59455 * 16 14 12 18 18 Si 1.86798 * 120.00036 * 186.59369 * 16 14 12 19 19 H 1.48503 * 109.47306 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.47156 * 300.00248 * 18 16 14 21 21 H 1.48499 * 109.47282 * 60.00175 * 18 16 14 22 22 C 1.50697 * 109.46732 * 179.97438 * 12 10 9 23 23 C 1.38238 * 119.99932 * 66.50041 * 22 12 10 24 24 C 1.38236 * 119.99880 * 179.78756 * 23 22 12 25 25 C 1.38238 * 119.99850 * 0.43403 * 24 23 22 26 26 C 1.38234 * 120.00277 * 359.81435 * 25 24 23 27 27 C 1.38233 * 119.99603 * 359.97438 * 26 25 24 28 28 N 1.36025 * 125.78943 * 123.83229 * 4 2 1 29 29 C 1.46503 * 126.49507 * 359.96502 * 28 4 2 30 30 H 1.09003 * 109.47117 * 296.04656 * 1 2 3 31 31 H 1.08997 * 109.46940 * 56.05256 * 1 2 3 32 32 H 1.09003 * 109.46728 * 176.04954 * 1 2 3 33 33 H 1.08999 * 109.47108 * 187.92674 * 3 2 1 34 34 H 1.09004 * 109.47385 * 307.92236 * 3 2 1 35 35 H 1.08995 * 109.47789 * 67.92357 * 3 2 1 36 36 H 1.08005 * 125.83864 * 180.23959 * 6 5 4 37 37 H 1.08999 * 109.47249 * 334.69433 * 8 7 6 38 38 H 1.08999 * 109.47838 * 214.69156 * 8 7 6 39 39 H 0.97001 * 119.99877 * 359.97438 * 9 8 7 40 40 H 0.96996 * 119.99589 * 355.77716 * 17 16 14 41 41 H 1.07996 * 119.99770 * 359.97438 * 23 22 12 42 42 H 1.07995 * 119.99930 * 180.27079 * 24 23 22 43 43 H 1.07998 * 119.99787 * 179.83638 * 25 24 23 44 44 H 1.07996 * 119.99922 * 179.97438 * 26 25 24 45 45 H 1.08009 * 119.99704 * 179.97438 * 27 26 25 46 46 H 1.08998 * 109.47055 * 274.59881 * 29 28 4 47 47 H 1.09003 * 109.46853 * 34.59830 * 29 28 4 48 48 H 1.09001 * 109.46960 * 154.59068 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9653 -0.7222 1.0725 5 7 1.6873 -0.5074 2.3366 6 6 2.3434 -1.4028 3.0941 7 6 3.0607 -2.1979 2.2823 8 6 3.9500 -3.3399 2.7018 9 7 3.1973 -4.5950 2.6348 10 6 3.7935 -5.7569 2.9680 11 8 4.9529 -5.7634 3.3237 12 6 3.0190 -7.0480 2.8995 13 1 2.6753 -7.2117 1.8782 14 6 1.8308 -6.9706 3.8231 15 1 1.8619 -6.3276 4.6903 16 6 0.7040 -7.7206 3.5611 17 7 0.7117 -8.5991 2.5824 18 14 -0.8337 -7.4891 4.5962 19 1 -1.8969 -8.4078 4.1158 20 1 -0.5241 -7.7909 6.0168 21 1 -1.3023 -6.0848 4.4793 22 6 3.9084 -8.1900 3.3189 23 6 4.3583 -8.2726 4.6234 24 6 5.1705 -9.3225 5.0091 25 6 5.5401 -10.2850 4.0882 26 6 5.0943 -10.1996 2.7825 27 6 4.2786 -9.1521 2.3979 28 7 2.8239 -1.7743 0.9940 29 6 3.3890 -2.3484 -0.2296 30 1 -0.3633 0.4513 0.9233 31 1 -0.3633 0.5739 -0.8525 32 1 -0.3633 -1.0253 -0.0708 33 1 3.0759 1.3459 -0.1417 34 1 1.5360 1.9370 -0.8107 35 1 1.7651 1.8491 0.9522 36 1 2.3030 -1.4703 4.1713 37 1 4.2937 -3.1766 3.7233 38 1 4.8095 -3.3956 2.0339 39 1 2.2697 -4.5897 2.3513 40 1 1.4881 -8.6763 2.0062 41 1 4.0729 -7.5185 5.3418 42 1 5.5185 -9.3894 6.0293 43 1 6.1768 -11.1039 4.3890 44 1 5.3834 -10.9514 2.0630 45 1 3.9306 -9.0851 1.3776 46 1 2.6936 -3.0788 -0.6431 47 1 3.5589 -1.5555 -0.9581 48 1 4.3351 -2.8378 0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417637241.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:44 Heat of formation + Delta-G solvation = 41.749637 kcal Electronic energy + Delta-G solvation = -29677.906069 eV Core-core repulsion = 25733.211309 eV Total energy + Delta-G solvation = -3944.694761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 8.84 seconds Orbital eigenvalues (eV) -43.21153 -40.97862 -39.45511 -38.14608 -35.87064 -35.80403 -34.92435 -32.70364 -31.63286 -31.22908 -29.00598 -28.63311 -28.00501 -26.92930 -25.56656 -24.92163 -23.27161 -22.59785 -21.77674 -21.25184 -20.79608 -19.26466 -18.36550 -17.73749 -17.59390 -17.22996 -16.78071 -16.59996 -16.29753 -15.70691 -15.67903 -15.63205 -15.37208 -15.20533 -14.75668 -14.62943 -14.48389 -14.09691 -14.02727 -13.84033 -13.79257 -13.63852 -13.40616 -13.21895 -13.18306 -13.01883 -12.84856 -12.72367 -12.60116 -11.98587 -11.91799 -11.79406 -11.29813 -10.94177 -10.77124 -10.61305 -10.55203 -10.06924 -9.96656 -9.65047 -9.45015 -9.31283 -8.62964 -6.38220 0.63084 0.67332 0.75496 1.44850 1.55412 1.60446 1.79301 1.80698 1.83921 2.55692 2.57157 2.82136 3.09198 3.21895 3.44139 3.82268 3.86785 4.02690 4.10576 4.21016 4.22088 4.29524 4.30351 4.36052 4.37505 4.39592 4.54192 4.56776 4.59388 4.65541 4.66841 4.76890 4.84194 4.87180 4.90828 4.91180 5.06602 5.25906 5.32698 5.42864 5.45657 5.64839 5.66877 5.69503 5.73285 5.74199 6.05345 6.15361 6.31436 6.36687 6.51990 6.61207 6.88007 7.35750 7.39852 8.76214 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.012300 B = 0.003112 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.836703 B = 8994.134364 C =10247.903167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.475 5.475 3 C 0.036 3.964 4 C 0.371 3.629 5 N -0.533 5.533 6 C -0.005 4.005 7 C -0.035 4.035 8 C 0.208 3.792 9 N -0.715 5.715 10 C 0.536 3.464 11 O -0.584 6.584 12 C 0.045 3.955 13 H 0.048 0.952 14 C -0.589 4.589 15 H 0.048 0.952 16 C -0.007 4.007 17 N -0.920 5.920 18 Si 1.105 2.895 19 H -0.286 1.286 20 H -0.279 1.279 21 H -0.268 1.268 22 C -0.046 4.046 23 C -0.107 4.107 24 C -0.134 4.134 25 C -0.141 4.141 26 C -0.127 4.127 27 C -0.149 4.149 28 N -0.439 5.439 29 C 0.074 3.926 30 H 0.035 0.965 31 H 0.109 0.891 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.031 0.969 36 H 0.181 0.819 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.406 0.594 40 H 0.265 0.735 41 H 0.094 0.906 42 H 0.137 0.863 43 H 0.149 0.851 44 H 0.142 0.858 45 H 0.109 0.891 46 H 0.079 0.921 47 H 0.108 0.892 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.829 13.402 -6.745 15.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.200 5.200 3 C -0.111 4.111 4 C 0.019 3.981 5 N -0.255 5.255 6 C -0.155 4.155 7 C -0.151 4.151 8 C 0.084 3.916 9 N -0.366 5.366 10 C 0.325 3.675 11 O -0.465 6.465 12 C 0.024 3.976 13 H 0.065 0.935 14 C -0.626 4.626 15 H 0.067 0.933 16 C -0.209 4.209 17 N -0.555 5.555 18 Si 0.928 3.072 19 H -0.211 1.211 20 H -0.204 1.204 21 H -0.193 1.193 22 C -0.047 4.047 23 C -0.125 4.125 24 C -0.152 4.152 25 C -0.159 4.159 26 C -0.145 4.145 27 C -0.167 4.167 28 N -0.123 5.123 29 C -0.067 4.067 30 H 0.054 0.946 31 H 0.127 0.873 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.126 0.874 35 H 0.050 0.950 36 H 0.198 0.802 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.241 0.759 40 H 0.076 0.924 41 H 0.113 0.887 42 H 0.155 0.845 43 H 0.167 0.833 44 H 0.160 0.840 45 H 0.127 0.873 46 H 0.098 0.902 47 H 0.127 0.873 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.841 13.180 -6.591 15.007 hybrid contribution 1.232 0.198 0.086 1.251 sum 4.073 13.378 -6.504 15.423 Atomic orbital electron populations 1.22431 0.83048 1.02858 1.02549 1.58908 1.10538 1.15396 1.35166 1.22490 1.01043 0.85324 1.02247 1.21133 0.95618 0.91768 0.89592 1.70681 1.26359 1.26993 1.01504 1.22271 0.98075 0.94816 1.00355 1.20999 1.07548 1.02543 0.83965 1.19421 0.91523 0.78605 1.02042 1.45945 1.16067 1.05479 1.69123 1.21031 0.86061 0.86187 0.74271 1.90571 1.18705 1.88043 1.49207 1.18064 0.93304 0.87724 0.98501 0.93462 1.21628 0.98713 1.30531 1.11764 0.93344 1.26924 1.03837 0.91530 0.98609 1.70884 1.34203 1.31878 1.18561 0.83051 0.72619 0.76978 0.74514 1.21125 1.20435 1.19346 1.20157 0.93977 0.96520 0.94052 1.20831 0.97841 0.98155 0.95679 1.21360 0.98552 0.94793 1.00511 1.21310 1.01538 0.99761 0.93245 1.21315 0.97938 0.97965 0.97291 1.21155 1.00117 0.96546 0.98930 1.45490 1.34912 1.24623 1.07314 1.22191 0.99807 1.00633 0.84117 0.94647 0.87305 0.92249 0.91204 0.87439 0.94981 0.80212 0.89461 0.90742 0.75923 0.92447 0.88746 0.84540 0.83338 0.84004 0.87310 0.90229 0.87338 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 9.47 127.69 1.21 1.90 16 2 N -0.48 -9.62 4.98 -756.53 -3.77 -13.38 16 3 C 0.04 0.56 9.56 127.69 1.22 1.78 16 4 C 0.37 9.70 6.36 260.37 1.66 11.36 16 5 N -0.53 -15.97 11.05 -197.94 -2.19 -18.16 16 6 C 0.00 -0.13 11.76 83.42 0.98 0.85 16 7 C -0.04 -0.98 6.33 40.76 0.26 -0.72 16 8 C 0.21 6.16 5.90 85.63 0.51 6.66 16 9 N -0.71 -25.77 5.45 -466.79 -2.54 -28.31 16 10 C 0.54 23.53 7.04 87.66 0.62 24.15 16 11 O -0.58 -27.90 15.43 -3.01 -0.05 -27.95 16 12 C 0.05 2.18 1.94 -13.03 -0.03 2.16 16 13 H 0.05 2.38 6.64 -2.39 -0.02 2.36 16 14 C -0.59 -30.23 7.45 25.60 0.19 -30.04 16 15 H 0.05 2.53 7.82 -2.91 -0.02 2.51 16 16 C -0.01 -0.38 5.45 84.66 0.46 0.08 16 17 N -0.92 -51.70 13.63 21.45 0.29 -51.41 16 18 Si 1.11 47.71 29.91 68.60 2.05 49.76 16 19 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 20 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 21 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 22 C -0.05 -2.19 4.16 -19.87 -0.08 -2.27 16 23 C -0.11 -4.90 8.33 22.27 0.19 -4.71 16 24 C -0.13 -5.12 10.05 22.27 0.22 -4.89 16 25 C -0.14 -4.81 10.05 22.27 0.22 -4.59 16 26 C -0.13 -4.62 10.05 22.27 0.22 -4.40 16 27 C -0.15 -6.44 9.49 22.27 0.21 -6.23 16 28 N -0.44 -11.01 3.20 -534.53 -1.71 -12.72 16 29 C 0.07 1.39 11.00 127.77 1.41 2.79 16 30 H 0.03 0.72 8.01 -2.39 -0.02 0.70 16 31 H 0.11 1.25 8.08 -2.39 -0.02 1.23 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.11 1.03 8.05 -2.38 -0.02 1.01 16 35 H 0.03 0.59 8.11 -2.39 -0.02 0.57 16 36 H 0.18 4.70 8.06 -2.91 -0.02 4.68 16 37 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.07 2.11 7.34 -2.39 -0.02 2.09 16 39 H 0.41 14.81 8.35 -92.71 -0.77 14.04 16 40 H 0.26 14.87 6.47 -92.71 -0.60 14.27 16 41 H 0.09 4.52 7.88 -2.91 -0.02 4.50 16 42 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 43 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 44 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 45 H 0.11 4.51 7.96 -2.91 -0.02 4.49 16 46 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.09 1.59 7.20 -2.39 -0.02 1.57 16 Total: -1.00 -68.91 404.20 1.91 -66.99 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: 0.36 Total: 41.30 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 9.46 Total: -6.12 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -9.92 Total: -123.98 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.05 Total: -27.95 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.05 Total: 49.76 kcal Total: -68.91 1.91 -66.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417637241.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.744 kcal (2) G-P(sol) polarization free energy of solvation -68.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.84 seconds