Wall clock time and date at job start Wed Apr 1 2020 01:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.34785 * 120.00049 * 89.99908 * 3 2 1 5 5 O 1.21280 * 120.00330 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.99545 * 0.02562 * 4 3 2 7 7 C 1.50700 * 109.46805 * 179.97438 * 6 4 3 8 8 C 1.39683 * 119.13654 * 90.00068 * 7 6 4 9 9 C 1.35639 * 121.81489 * 179.97438 * 8 7 6 10 10 C 1.41159 * 119.59543 * 359.97438 * 9 8 7 11 11 N 1.32061 * 134.67853 * 179.97438 * 10 9 8 12 12 N 1.39964 * 108.95544 * 180.02562 * 11 10 9 13 13 H 0.96999 * 125.01944 * 180.02562 * 12 11 10 14 14 C 1.33984 * 109.95717 * 0.02562 * 12 11 10 15 15 C 1.38242 * 107.91105 * 0.02562 * 14 12 11 16 16 C 1.35654 * 119.13441 * 269.72239 * 7 6 4 17 17 C 1.46500 * 120.00784 * 270.00147 * 3 2 1 18 18 H 1.09005 * 110.63495 * 1.69180 * 17 3 2 19 19 C 1.55154 * 110.72284 * 125.01918 * 17 3 2 20 20 C 1.54910 * 101.58376 * 153.87054 * 19 17 3 21 21 N 1.47430 * 104.83000 * 322.99505 * 20 19 17 22 22 C 1.36936 * 125.64521 * 204.16264 * 21 20 19 23 23 H 1.08000 * 119.99873 * 179.97438 * 22 21 20 24 24 C 1.38804 * 120.00148 * 359.95880 * 22 21 20 25 25 N 1.31623 * 120.00105 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99984 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47360 * 359.97438 * 26 24 22 28 28 H 1.48509 * 109.47070 * 119.99948 * 26 24 22 29 29 H 1.48501 * 109.47291 * 239.99377 * 26 24 22 30 30 C 1.47021 * 108.70192 * 24.12550 * 21 20 19 31 31 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 34 34 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 35 35 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 36 36 H 1.08998 * 109.46882 * 299.99456 * 6 4 3 37 37 H 1.09003 * 109.47544 * 59.99294 * 6 4 3 38 38 H 1.07995 * 119.09567 * 0.02562 * 8 7 6 39 39 H 1.08000 * 120.20376 * 179.97438 * 9 8 7 40 40 H 1.08003 * 126.04507 * 179.97438 * 14 12 11 41 41 H 1.08006 * 120.23209 * 359.97438 * 16 7 6 42 42 H 1.09000 * 111.00628 * 271.94550 * 19 17 3 43 43 H 1.09000 * 111.00503 * 35.79461 * 19 17 3 44 44 H 1.09000 * 110.36968 * 204.15394 * 20 19 17 45 45 H 1.09001 * 110.45677 * 81.87564 * 20 19 17 46 46 H 0.97000 * 119.99929 * 180.02562 * 25 24 22 47 47 H 1.08999 * 109.88278 * 239.52521 * 30 21 20 48 48 H 1.08999 * 109.87941 * 118.36158 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 1.1673 5 8 2.6468 3.1602 1.1673 6 6 1.9923 1.3059 2.4723 7 6 2.3192 2.2290 3.6178 8 6 1.3164 3.0523 4.1353 9 6 1.5504 3.9030 5.1655 10 6 2.8389 3.9661 5.7386 11 7 3.3861 4.6613 6.7190 12 7 4.7315 4.2951 6.8402 13 1 5.3522 4.6628 7.4885 14 6 5.0353 3.3617 5.9283 15 6 3.8949 3.0993 5.1923 16 6 3.5781 2.2345 4.1230 17 6 2.2625 2.0720 -1.2686 18 1 2.0038 1.4306 -2.1112 19 6 1.4740 3.4069 -1.3275 20 6 2.3402 4.2369 -2.3075 21 7 3.7310 3.8646 -1.9899 22 6 4.8384 4.6317 -2.2356 23 1 5.8183 4.2680 -1.9639 24 6 4.7015 5.8765 -2.8343 25 7 3.5073 6.3194 -3.1662 26 14 6.2122 6.9232 -3.1688 27 1 7.4255 6.2040 -2.7044 28 1 6.3194 7.1860 -4.6265 29 1 6.0924 8.2121 -2.4411 30 6 3.7318 2.5339 -1.3649 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 0.9444 1.0114 2.5302 37 1 2.6227 0.4185 2.5299 38 1 0.3273 3.0098 3.7038 39 1 0.7558 4.5283 5.5450 40 1 6.0007 2.8971 5.7918 41 1 4.3336 1.5840 3.7075 42 1 0.4719 3.2514 -1.7274 43 1 1.4323 3.8797 -0.3463 44 1 2.1854 5.3029 -2.1412 45 1 2.1040 3.9764 -3.3392 46 1 3.4118 7.1892 -3.5849 47 1 4.1679 2.5929 -0.3677 48 1 4.3003 1.8360 -1.9797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481771321.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:39 Heat of formation + Delta-G solvation = 99.628638 kcal Electronic energy + Delta-G solvation = -30208.292262 eV Core-core repulsion = 26266.107323 eV Total energy + Delta-G solvation = -3942.184939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.29471 -40.02844 -37.67212 -36.41854 -35.37915 -32.84019 -32.21790 -31.11868 -30.21751 -30.16496 -28.88981 -27.55168 -26.35678 -24.41459 -23.92386 -23.24264 -21.58964 -20.74312 -20.51797 -20.01665 -18.32867 -18.25501 -16.89627 -16.76803 -16.67150 -15.95971 -15.22217 -15.00924 -14.91782 -14.52892 -14.22355 -14.10050 -13.90556 -13.76445 -13.52563 -13.15494 -13.07006 -12.91922 -12.30030 -12.01813 -11.94709 -11.81868 -11.68071 -11.54433 -11.46674 -11.33796 -11.08585 -10.88193 -10.75659 -10.64052 -10.37527 -10.35403 -10.28441 -9.97867 -9.69105 -9.42452 -8.96928 -8.72213 -8.50561 -8.18514 -7.57595 -6.64424 -5.49893 -2.89748 0.59829 1.79852 2.40672 2.61015 3.05153 3.27038 3.48659 3.53590 3.56359 3.87233 4.20311 4.55595 4.62572 4.77337 4.79740 4.95755 5.00637 5.06858 5.17699 5.27964 5.35470 5.41631 5.51295 5.54108 5.59166 5.63313 5.66655 5.68349 5.72177 5.75179 5.91349 6.00180 6.12143 6.15312 6.41004 6.43442 6.45400 6.66102 6.70073 6.72099 6.75419 6.87146 6.89427 6.96133 7.32613 7.51963 7.65337 7.78526 7.81176 8.02491 8.52891 8.66656 9.37629 9.99160 10.64595 11.54174 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.008648 B = 0.003755 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3237.026826 B = 7455.921932 C = 9807.932440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.609 5.609 4 C 0.504 3.496 5 O -0.495 6.495 6 C -0.097 4.097 7 C -0.096 4.096 8 C -0.053 4.053 9 C -0.109 4.109 10 C 0.108 3.892 11 N -0.313 5.313 12 N -0.430 5.430 13 H 0.442 0.558 14 C 0.081 3.919 15 C -0.200 4.200 16 C -0.029 4.029 17 C 0.136 3.864 18 H 0.085 0.915 19 C -0.155 4.155 20 C 0.158 3.842 21 N -0.596 5.596 22 C -0.211 4.211 23 H 0.075 0.925 24 C -0.014 4.014 25 N -0.923 5.923 26 Si 0.911 3.089 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 C 0.134 3.866 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.187 0.813 41 H 0.121 0.879 42 H 0.050 0.950 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.008 0.992 46 H 0.249 0.751 47 H 0.036 0.964 48 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.311 -15.821 16.880 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.344 5.344 4 C 0.290 3.710 5 O -0.368 6.368 6 C -0.137 4.137 7 C -0.098 4.098 8 C -0.076 4.076 9 C -0.130 4.130 10 C -0.046 4.046 11 N -0.141 5.141 12 N -0.130 5.130 13 H 0.286 0.714 14 C -0.076 4.076 15 C -0.210 4.210 16 C -0.049 4.049 17 C 0.033 3.967 18 H 0.103 0.897 19 C -0.194 4.194 20 C 0.033 3.967 21 N -0.322 5.322 22 C -0.340 4.340 23 H 0.093 0.907 24 C -0.209 4.209 25 N -0.573 5.573 26 Si 0.743 3.257 27 H -0.207 1.207 28 H -0.219 1.219 29 H -0.219 1.219 30 C 0.007 3.993 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.204 0.796 41 H 0.139 0.861 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.123 0.877 45 H 0.026 0.974 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -4.225 -14.075 17.722 23.022 hybrid contribution 1.304 0.015 -0.647 1.456 sum -2.921 -14.060 17.075 22.311 Atomic orbital electron populations 1.22236 0.96159 1.01811 1.02791 1.21533 0.94303 0.83097 1.02925 1.48052 1.66553 1.13643 1.06157 1.20479 0.78563 0.87264 0.84657 1.90847 1.42373 1.16912 1.86703 1.20739 1.03728 0.98130 0.91097 1.18643 0.93998 0.99751 0.97413 1.20486 0.98865 0.94007 0.94209 1.19782 0.93106 1.01636 0.98460 1.20955 0.95429 0.94413 0.93757 1.77643 0.88693 1.24828 1.22951 1.46271 1.10108 1.29604 1.26987 0.71446 1.22676 0.99580 0.93570 0.91772 1.19562 0.93179 1.05176 1.03097 1.19997 0.95472 0.96290 0.93135 1.22149 0.97330 0.93817 0.83386 0.89706 1.23419 0.97317 0.95710 1.02975 1.21826 0.81743 1.00850 0.92314 1.44293 1.03367 1.14325 1.70181 1.19090 0.85779 0.97075 1.32056 0.90740 1.24741 0.96826 0.97699 1.01596 1.69817 1.19906 1.19630 1.47912 0.86030 0.81864 0.80446 0.77387 1.20673 1.21893 1.21875 1.21469 0.92813 0.88326 0.96675 0.92468 0.91859 0.92057 0.90645 0.90484 0.88513 0.88624 0.85808 0.85493 0.79602 0.86070 0.93173 0.89854 0.87685 0.97417 0.93998 0.94647 0.96875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 10.24 37.16 0.38 -1.03 16 2 C 0.11 0.99 5.91 -4.04 -0.02 0.96 16 3 N -0.61 -8.76 2.54 -164.03 -0.42 -9.17 16 4 C 0.50 7.91 6.77 -10.98 -0.07 7.83 16 5 O -0.50 -10.56 12.38 5.56 0.07 -10.49 16 6 C -0.10 -1.06 4.33 -29.03 -0.13 -1.19 16 7 C -0.10 -1.24 4.33 -105.01 -0.45 -1.69 16 8 C -0.05 -0.68 9.51 -39.97 -0.38 -1.06 16 9 C -0.11 -1.48 10.08 -39.40 -0.40 -1.87 16 10 C 0.11 1.59 7.49 -83.05 -0.62 0.97 16 11 N -0.31 -4.41 12.70 33.26 0.42 -3.99 16 12 N -0.43 -4.26 7.18 30.84 0.22 -4.04 16 13 H 0.44 2.55 8.96 -182.70 -1.64 0.91 16 14 C 0.08 0.79 12.07 -16.61 -0.20 0.59 16 15 C -0.20 -2.65 6.33 -105.19 -0.67 -3.31 16 16 C -0.03 -0.37 9.66 -39.41 -0.38 -0.75 16 17 C 0.14 2.48 3.44 -66.10 -0.23 2.26 16 18 H 0.08 1.39 7.88 -51.93 -0.41 0.98 16 19 C -0.15 -3.25 6.39 -24.58 -0.16 -3.40 16 20 C 0.16 4.13 5.89 -2.53 -0.01 4.11 16 21 N -0.60 -16.45 3.39 -170.08 -0.58 -17.03 16 22 C -0.21 -6.31 10.27 -15.06 -0.15 -6.46 16 23 H 0.07 2.17 7.83 -52.49 -0.41 1.76 16 24 C -0.01 -0.41 5.49 -17.43 -0.10 -0.51 16 25 N -0.92 -28.43 10.09 55.49 0.56 -27.87 16 26 Si 0.91 23.34 29.55 -169.99 -5.02 18.32 16 27 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 29 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 30 C 0.13 3.05 6.49 -3.07 -0.02 3.03 16 31 H 0.06 0.47 7.22 -51.93 -0.38 0.10 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.54 6.44 -51.93 -0.33 0.20 16 35 H 0.08 0.67 7.96 -51.93 -0.41 0.26 16 36 H 0.10 0.83 7.12 -51.93 -0.37 0.46 16 37 H 0.10 0.81 7.32 -51.93 -0.38 0.43 16 38 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.19 0.99 8.06 -52.48 -0.42 0.57 16 41 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.08 1.93 5.81 -51.93 -0.30 1.62 16 44 H 0.11 3.13 5.87 -51.93 -0.31 2.82 16 45 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.04 0.86 6.28 -51.93 -0.33 0.54 16 48 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 LS Contribution 383.82 15.07 5.78 5.78 Total: -1.00 -39.10 383.82 -10.78 -49.88 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -8.20 Total: 0.14 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -3.62 Total: -1.53 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 0.21 Total: -62.11 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.07 Total: -10.49 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.10 -10.78 -49.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481771321.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.511 kcal (2) G-P(sol) polarization free energy of solvation -39.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds