Wall clock time and date at job start Wed Apr 1 2020 04:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28446 * 125.18741 * 2 1 4 4 C 1.30862 * 110.92460 * 180.02562 * 3 2 1 5 5 C 1.39674 * 107.86519 * 359.77969 * 4 3 2 6 6 C 1.36596 * 125.19128 * 180.02562 * 2 1 3 7 7 C 1.47164 * 126.88600 * 359.94532 * 6 2 1 8 8 O 1.21624 * 119.99952 * 4.87168 * 7 6 2 9 9 N 1.34772 * 120.00038 * 184.86693 * 7 6 2 10 10 C 1.46494 * 120.00009 * 174.32631 * 9 7 6 11 11 H 1.08999 * 109.47105 * 324.99900 * 10 9 7 12 12 C 1.53007 * 109.47508 * 205.00401 * 10 9 7 13 13 C 1.52995 * 109.47164 * 64.99594 * 12 10 9 14 14 C 1.52997 * 109.47097 * 180.02562 * 13 12 10 15 15 N 1.46503 * 109.47025 * 180.02562 * 14 13 12 16 16 C 1.36944 * 120.00061 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99624 * 359.97438 * 16 15 14 18 18 C 1.38803 * 119.99932 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00506 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99696 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47439 * 59.99738 * 20 18 16 22 22 H 1.48504 * 109.47009 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46971 * 299.99428 * 20 18 16 24 24 C 1.50704 * 109.47427 * 85.00302 * 10 9 7 25 25 C 1.38232 * 119.99721 * 39.72235 * 24 10 9 26 26 C 1.38232 * 119.99995 * 179.81013 * 25 24 10 27 27 C 1.38241 * 119.99762 * 0.40315 * 26 25 24 28 28 C 1.38238 * 119.99944 * 359.85615 * 27 26 25 29 29 C 1.38228 * 119.99951 * 220.00487 * 24 10 9 30 30 H 1.09003 * 109.46885 * 264.29123 * 1 2 3 31 31 H 1.09001 * 109.47202 * 24.29175 * 1 2 3 32 32 H 1.08999 * 109.47060 * 144.29238 * 1 2 3 33 33 H 1.08006 * 126.07050 * 180.02562 * 4 3 2 34 34 H 1.08000 * 127.32260 * 180.23716 * 5 4 3 35 35 H 0.97006 * 120.00248 * 354.32798 * 9 7 6 36 36 H 1.08996 * 109.47311 * 185.00390 * 12 10 9 37 37 H 1.09007 * 109.46329 * 305.00217 * 12 10 9 38 38 H 1.09009 * 109.47559 * 300.00286 * 13 12 10 39 39 H 1.08997 * 109.47309 * 60.00556 * 13 12 10 40 40 H 1.09000 * 109.47112 * 299.99793 * 14 13 12 41 41 H 1.08997 * 109.47535 * 60.00046 * 14 13 12 42 42 H 0.96999 * 119.99989 * 359.97438 * 15 14 13 43 43 H 0.96995 * 120.00514 * 180.02562 * 19 18 16 44 44 H 1.08005 * 120.00079 * 0.02562 * 25 24 10 45 45 H 1.07999 * 120.00435 * 180.23365 * 26 25 24 46 46 H 1.07999 * 120.00032 * 179.83018 * 27 26 25 47 47 H 1.08002 * 119.99829 * 179.97438 * 28 27 26 48 48 H 1.08007 * 120.00488 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4734 0.7273 -0.0005 5 6 3.5612 -0.6666 0.0042 6 6 2.2522 -1.1163 -0.0005 7 6 1.7993 -2.5165 0.0000 8 8 0.6136 -2.7722 -0.0885 9 7 2.6985 -3.5156 0.0984 10 6 2.2423 -4.9020 0.2242 11 1 1.3255 -4.9308 0.8130 12 6 3.3218 -5.7331 0.9205 13 6 3.5026 -5.2347 2.3557 14 6 4.5826 -6.0654 3.0518 15 7 4.7552 -5.5885 4.4262 16 6 5.6748 -6.1847 5.2474 17 1 6.2724 -7.0068 4.8819 18 6 5.8380 -5.7333 6.5498 19 7 5.1093 -4.7319 6.9954 20 14 7.0928 -6.5461 7.6697 21 1 8.4464 -6.4166 7.0728 22 1 7.0729 -5.8836 8.9986 23 1 6.7570 -7.9840 7.8279 24 6 1.9772 -5.4699 -1.1464 25 6 2.8272 -5.1708 -2.1946 26 6 2.5863 -5.6949 -3.4509 27 6 1.4906 -6.5114 -3.6607 28 6 0.6376 -6.8061 -2.6135 29 6 0.8808 -6.2851 -1.3564 30 1 -0.3633 -0.1022 1.0226 31 1 -0.3634 0.9367 -0.4228 32 1 -0.3633 -0.8345 -0.5998 33 1 4.3048 1.4168 -0.0003 34 1 4.4595 -1.2662 0.0086 35 1 3.6479 -3.3166 0.0860 36 1 3.0211 -6.7807 0.9348 37 1 4.2629 -5.6325 0.3797 38 1 3.8034 -4.1870 2.3414 39 1 2.5616 -5.3352 2.8965 40 1 4.2822 -7.1131 3.0661 41 1 5.5235 -5.9646 2.5110 42 1 4.2187 -4.8500 4.7544 43 1 5.2237 -4.4161 7.9054 44 1 3.6815 -4.5305 -2.0314 45 1 3.2525 -5.4644 -4.2691 46 1 1.3009 -6.9186 -4.6428 47 1 -0.2186 -7.4436 -2.7776 48 1 0.2144 -6.5154 -0.5383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485778291.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:31 Heat of formation + Delta-G solvation = 74.045430 kcal Electronic energy + Delta-G solvation = -29082.201374 eV Core-core repulsion = 25138.907064 eV Total energy + Delta-G solvation = -3943.294310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.67547 -40.27061 -38.85052 -36.56937 -34.89575 -33.58187 -32.73797 -31.89611 -31.04783 -30.57182 -30.09870 -27.33780 -26.98599 -24.41188 -23.45270 -22.74701 -22.36646 -21.83978 -20.84910 -20.53280 -20.21401 -18.27366 -17.21045 -16.94856 -16.60479 -16.39859 -15.82505 -15.54805 -14.94491 -14.78070 -14.73128 -14.52532 -14.17888 -13.97532 -13.67285 -13.62879 -13.52816 -13.32920 -13.04534 -12.96952 -12.93121 -12.55516 -12.25813 -11.86711 -11.70002 -11.24637 -11.15384 -11.01413 -10.85983 -10.83531 -10.58875 -10.48773 -10.22254 -10.06914 -9.71222 -9.49919 -9.27274 -9.18803 -9.04355 -8.86307 -8.83709 -6.91577 -5.75598 -3.04573 1.07816 1.18798 1.27294 2.18922 2.44827 3.00162 3.06428 3.44395 3.48528 3.49856 3.65435 4.34758 4.39681 4.47679 4.62924 4.70981 4.82218 4.89959 4.94782 4.97236 4.97881 5.07596 5.09779 5.31182 5.31805 5.35345 5.41752 5.46124 5.54049 5.55794 5.62746 5.80687 5.82749 5.89105 6.01411 6.13240 6.18878 6.28107 6.28794 6.33515 6.36278 6.38330 6.51045 6.52026 6.83744 6.85268 6.87387 7.21529 7.69739 7.83299 7.95371 8.43382 9.54147 10.12814 10.46976 11.47264 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.007719 B = 0.003016 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3626.608604 B = 9281.531596 C =12036.034066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.258 5.258 3 N -0.280 5.280 4 C -0.003 4.003 5 C -0.186 4.186 6 C -0.038 4.038 7 C 0.596 3.404 8 O -0.537 6.537 9 N -0.703 5.703 10 C 0.190 3.810 11 H 0.100 0.900 12 C -0.117 4.117 13 C -0.126 4.126 14 C 0.154 3.846 15 N -0.734 5.734 16 C -0.241 4.241 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.088 4.088 25 C -0.105 4.105 26 C -0.122 4.122 27 C -0.124 4.124 28 C -0.120 4.120 29 C -0.103 4.103 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.187 0.813 34 H 0.162 0.838 35 H 0.405 0.595 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.018 0.982 41 H 0.017 0.983 42 H 0.383 0.617 43 H 0.256 0.744 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.121 0.879 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.394 4.478 -23.279 25.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.046 5.046 3 N -0.113 5.113 4 C -0.178 4.178 5 C -0.215 4.215 6 C -0.167 4.167 7 C 0.381 3.619 8 O -0.415 6.415 9 N -0.354 5.354 10 C 0.085 3.915 11 H 0.118 0.882 12 C -0.156 4.156 13 C -0.164 4.164 14 C 0.026 3.974 15 N -0.378 5.378 16 C -0.372 4.372 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.090 4.090 25 C -0.124 4.124 26 C -0.140 4.140 27 C -0.142 4.142 28 C -0.138 4.138 29 C -0.121 4.121 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.204 0.796 34 H 0.179 0.821 35 H 0.241 0.759 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.139 0.861 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.020 5.095 -23.231 25.807 hybrid contribution 1.571 -0.697 0.797 1.895 sum -8.449 4.398 -22.433 24.371 Atomic orbital electron populations 1.22330 0.72537 1.05513 1.05036 1.45605 1.07906 1.01719 1.49323 1.73225 1.04481 1.13618 1.19934 1.23587 0.93442 0.95047 1.05720 1.22295 0.95601 0.95733 1.07867 1.21384 0.91542 0.89651 1.14088 1.16863 0.85722 0.83041 0.76226 1.90784 1.16238 1.84489 1.49942 1.45694 1.09836 1.05849 1.74027 1.20002 0.99577 0.79365 0.92516 0.88241 1.21848 0.97664 0.99821 0.96244 1.21752 1.00463 1.00453 0.93712 1.20628 0.94656 0.95414 0.86704 1.42365 1.46493 1.40914 1.08057 1.19193 1.12902 1.12216 0.92898 0.91259 1.24745 1.00067 0.98758 0.97433 1.69648 1.42957 1.28672 1.16985 0.86266 0.81156 0.78635 0.80124 1.21251 1.21677 1.21263 1.20193 0.95376 0.97848 0.95549 1.20909 0.99177 0.99618 0.92648 1.21109 0.97851 0.98048 0.97033 1.21134 0.95335 0.98804 0.98921 1.21118 0.99546 1.00141 0.93037 1.21015 0.96650 0.97152 0.97326 0.89624 0.88820 0.87418 0.79561 0.82054 0.75894 0.89807 0.90988 0.91828 0.91817 0.96463 0.96487 0.78330 0.93459 0.86369 0.86272 0.86361 0.86134 0.85892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 10.71 59.85 0.64 1.45 16 2 N -0.26 -3.14 3.75 -63.88 -0.24 -3.38 16 3 N -0.28 -3.48 11.90 30.59 0.36 -3.11 16 4 C 0.00 -0.03 12.03 -17.43 -0.21 -0.24 16 5 C -0.19 -1.92 10.50 -38.98 -0.41 -2.33 16 6 C -0.04 -0.46 6.96 -82.06 -0.57 -1.03 16 7 C 0.60 7.46 7.74 -12.64 -0.10 7.36 16 8 O -0.54 -7.92 14.52 5.26 0.08 -7.84 16 9 N -0.70 -7.36 3.75 -56.09 -0.21 -7.57 16 10 C 0.19 2.07 2.13 -69.08 -0.15 1.93 16 11 H 0.10 1.23 7.53 -51.93 -0.39 0.84 16 12 C -0.12 -1.32 4.73 -26.73 -0.13 -1.44 16 13 C -0.13 -1.88 5.21 -26.73 -0.14 -2.02 16 14 C 0.15 2.99 6.26 -4.04 -0.03 2.96 16 15 N -0.73 -18.69 5.60 -59.91 -0.34 -19.02 16 16 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 20 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C -0.09 -0.95 4.91 -104.63 -0.51 -1.47 16 25 C -0.11 -1.05 9.32 -39.59 -0.37 -1.42 16 26 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 27 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 28 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 29 C -0.10 -1.09 9.67 -39.59 -0.38 -1.47 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.11 1.05 6.55 -51.93 -0.34 0.71 16 33 H 0.19 1.37 8.06 -52.48 -0.42 0.95 16 34 H 0.16 1.21 7.58 -52.49 -0.40 0.81 16 35 H 0.41 3.48 7.63 -40.82 -0.31 3.17 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.96 7.75 -51.92 -0.40 0.55 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.38 10.29 7.67 -40.82 -0.31 9.98 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.12 1.02 7.71 -52.48 -0.40 0.61 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 48 H 0.12 1.18 8.04 -52.48 -0.42 0.76 16 LS Contribution 405.10 15.07 6.10 6.10 Total: -1.00 -35.13 405.10 -9.51 -44.64 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -7.18 Total: 10.28 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -3.79 Total: -9.77 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 0.30 Total: -60.86 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.08 Total: -7.84 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.13 -9.51 -44.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485778291.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.682 kcal (2) G-P(sol) polarization free energy of solvation -35.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds