Wall clock time and date at job start Wed Apr 1 2020 04:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28446 * 125.18741 * 2 1 4 4 C 1.30862 * 110.92460 * 180.02562 * 3 2 1 5 5 C 1.39674 * 107.86519 * 359.77969 * 4 3 2 6 6 C 1.36596 * 125.19128 * 180.02562 * 2 1 3 7 7 C 1.47164 * 126.88600 * 359.94532 * 6 2 1 8 8 O 1.21624 * 119.99952 * 4.87168 * 7 6 2 9 9 N 1.34772 * 120.00038 * 184.86693 * 7 6 2 10 10 C 1.46494 * 120.00009 * 174.32631 * 9 7 6 11 11 H 1.08999 * 109.47105 * 324.99900 * 10 9 7 12 12 C 1.53007 * 109.47508 * 205.00401 * 10 9 7 13 13 C 1.52995 * 109.47164 * 64.99594 * 12 10 9 14 14 C 1.52997 * 109.47097 * 180.02562 * 13 12 10 15 15 N 1.46503 * 109.47025 * 180.02562 * 14 13 12 16 16 C 1.36944 * 120.00061 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99624 * 359.97438 * 16 15 14 18 18 C 1.38803 * 119.99932 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00506 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99696 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47439 * 59.99738 * 20 18 16 22 22 H 1.48504 * 109.47009 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46971 * 299.99428 * 20 18 16 24 24 C 1.50704 * 109.47427 * 85.00302 * 10 9 7 25 25 C 1.38232 * 119.99721 * 39.72235 * 24 10 9 26 26 C 1.38232 * 119.99995 * 179.81013 * 25 24 10 27 27 C 1.38241 * 119.99762 * 0.40315 * 26 25 24 28 28 C 1.38238 * 119.99944 * 359.85615 * 27 26 25 29 29 C 1.38228 * 119.99951 * 220.00487 * 24 10 9 30 30 H 1.09003 * 109.46885 * 264.29123 * 1 2 3 31 31 H 1.09001 * 109.47202 * 24.29175 * 1 2 3 32 32 H 1.08999 * 109.47060 * 144.29238 * 1 2 3 33 33 H 1.08006 * 126.07050 * 180.02562 * 4 3 2 34 34 H 1.08000 * 127.32260 * 180.23716 * 5 4 3 35 35 H 0.97006 * 120.00248 * 354.32798 * 9 7 6 36 36 H 1.08996 * 109.47311 * 185.00390 * 12 10 9 37 37 H 1.09007 * 109.46329 * 305.00217 * 12 10 9 38 38 H 1.09009 * 109.47559 * 300.00286 * 13 12 10 39 39 H 1.08997 * 109.47309 * 60.00556 * 13 12 10 40 40 H 1.09000 * 109.47112 * 299.99793 * 14 13 12 41 41 H 1.08997 * 109.47535 * 60.00046 * 14 13 12 42 42 H 0.96999 * 119.99989 * 359.97438 * 15 14 13 43 43 H 0.96995 * 120.00514 * 180.02562 * 19 18 16 44 44 H 1.08005 * 120.00079 * 0.02562 * 25 24 10 45 45 H 1.07999 * 120.00435 * 180.23365 * 26 25 24 46 46 H 1.07999 * 120.00032 * 179.83018 * 27 26 25 47 47 H 1.08002 * 119.99829 * 179.97438 * 28 27 26 48 48 H 1.08007 * 120.00488 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4734 0.7273 -0.0005 5 6 3.5612 -0.6666 0.0042 6 6 2.2522 -1.1163 -0.0005 7 6 1.7993 -2.5165 0.0000 8 8 0.6136 -2.7722 -0.0885 9 7 2.6985 -3.5156 0.0984 10 6 2.2423 -4.9020 0.2242 11 1 1.3255 -4.9308 0.8130 12 6 3.3218 -5.7331 0.9205 13 6 3.5026 -5.2347 2.3557 14 6 4.5826 -6.0654 3.0518 15 7 4.7552 -5.5885 4.4262 16 6 5.6748 -6.1847 5.2474 17 1 6.2724 -7.0068 4.8819 18 6 5.8380 -5.7333 6.5498 19 7 5.1093 -4.7319 6.9954 20 14 7.0928 -6.5461 7.6697 21 1 8.4464 -6.4166 7.0728 22 1 7.0729 -5.8836 8.9986 23 1 6.7570 -7.9840 7.8279 24 6 1.9772 -5.4699 -1.1464 25 6 2.8272 -5.1708 -2.1946 26 6 2.5863 -5.6949 -3.4509 27 6 1.4906 -6.5114 -3.6607 28 6 0.6376 -6.8061 -2.6135 29 6 0.8808 -6.2851 -1.3564 30 1 -0.3633 -0.1022 1.0226 31 1 -0.3634 0.9367 -0.4228 32 1 -0.3633 -0.8345 -0.5998 33 1 4.3048 1.4168 -0.0003 34 1 4.4595 -1.2662 0.0086 35 1 3.6479 -3.3166 0.0860 36 1 3.0211 -6.7807 0.9348 37 1 4.2629 -5.6325 0.3797 38 1 3.8034 -4.1870 2.3414 39 1 2.5616 -5.3352 2.8965 40 1 4.2822 -7.1131 3.0661 41 1 5.5235 -5.9646 2.5110 42 1 4.2187 -4.8500 4.7544 43 1 5.2237 -4.4161 7.9054 44 1 3.6815 -4.5305 -2.0314 45 1 3.2525 -5.4644 -4.2691 46 1 1.3009 -6.9186 -4.6428 47 1 -0.2186 -7.4436 -2.7776 48 1 0.2144 -6.5154 -0.5383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485778291.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:25 Heat of formation + Delta-G solvation = 52.531115 kcal Electronic energy + Delta-G solvation = -29083.134305 eV Core-core repulsion = 25138.907064 eV Total energy + Delta-G solvation = -3944.227241 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 12.94 seconds Orbital eigenvalues (eV) -43.51427 -41.14317 -39.68016 -37.73354 -36.43620 -34.55246 -34.04806 -33.10060 -31.77085 -31.66044 -31.37890 -28.40566 -28.00854 -25.95351 -24.43684 -23.86226 -23.41231 -22.65551 -22.20914 -21.38801 -21.10441 -19.20848 -19.03268 -17.88801 -17.52726 -17.24853 -16.79341 -16.55657 -16.32948 -15.95871 -15.73331 -15.43825 -15.38706 -15.28411 -14.86697 -14.72737 -14.45248 -14.28205 -14.17450 -13.89474 -13.75405 -13.49752 -13.29081 -13.20306 -12.90157 -12.69695 -12.57144 -12.21977 -12.09240 -11.91679 -11.86956 -11.86309 -11.73417 -11.64485 -11.20980 -10.90936 -10.44027 -10.13433 -10.01443 -9.77263 -9.60082 -8.98961 -7.94439 -5.23583 0.19495 0.44294 0.54606 1.38064 1.47939 1.51164 1.57334 1.63166 2.12200 2.18456 2.56905 2.90669 3.39342 3.53694 3.57255 3.61616 3.90322 3.99189 4.09140 4.13930 4.15331 4.20560 4.25951 4.32112 4.35272 4.42009 4.56417 4.57971 4.64304 4.65899 4.73736 4.76288 4.83119 4.86079 4.90806 5.07419 5.12084 5.16893 5.27449 5.43090 5.43309 5.51397 5.52699 5.60108 5.65523 5.70299 5.74148 6.14600 6.27964 6.35510 6.97849 7.07312 7.33799 8.11402 8.33065 9.29074 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.007719 B = 0.003016 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3626.608604 B = 9281.531596 C =12036.034066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.270 5.270 3 N -0.302 5.302 4 C -0.008 4.008 5 C -0.179 4.179 6 C -0.060 4.060 7 C 0.595 3.405 8 O -0.567 6.567 9 N -0.692 5.692 10 C 0.198 3.802 11 H 0.081 0.919 12 C -0.103 4.103 13 C -0.111 4.111 14 C 0.150 3.850 15 N -0.750 5.750 16 C -0.247 4.247 17 H 0.077 0.923 18 C -0.077 4.077 19 N -0.971 5.971 20 Si 0.974 3.026 21 H -0.275 1.275 22 H -0.296 1.296 23 H -0.278 1.278 24 C -0.101 4.101 25 C -0.114 4.114 26 C -0.129 4.129 27 C -0.128 4.128 28 C -0.128 4.128 29 C -0.122 4.122 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.216 0.784 34 H 0.189 0.811 35 H 0.416 0.584 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.018 0.982 41 H 0.027 0.973 42 H 0.372 0.628 43 H 0.251 0.749 44 H 0.131 0.869 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.137 0.863 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.933 3.861 -24.942 26.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.058 5.058 3 N -0.135 5.135 4 C -0.183 4.183 5 C -0.208 4.208 6 C -0.189 4.189 7 C 0.381 3.619 8 O -0.446 6.446 9 N -0.343 5.343 10 C 0.094 3.906 11 H 0.099 0.901 12 C -0.141 4.141 13 C -0.149 4.149 14 C 0.024 3.976 15 N -0.392 5.392 16 C -0.379 4.379 17 H 0.095 0.905 18 C -0.269 4.269 19 N -0.622 5.622 20 Si 0.803 3.197 21 H -0.201 1.201 22 H -0.222 1.222 23 H -0.204 1.204 24 C -0.102 4.102 25 C -0.133 4.133 26 C -0.147 4.147 27 C -0.146 4.146 28 C -0.146 4.146 29 C -0.140 4.140 30 H 0.104 0.896 31 H 0.131 0.869 32 H 0.119 0.881 33 H 0.233 0.767 34 H 0.206 0.794 35 H 0.254 0.746 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.036 0.964 41 H 0.045 0.955 42 H 0.203 0.797 43 H 0.060 0.940 44 H 0.149 0.851 45 H 0.158 0.842 46 H 0.159 0.841 47 H 0.155 0.845 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.536 4.446 -24.939 26.732 hybrid contribution 1.103 -0.526 1.223 1.729 sum -7.433 3.920 -23.716 25.161 Atomic orbital electron populations 1.22415 0.71808 1.06243 1.05126 1.45847 1.08612 1.01725 1.49664 1.73204 1.05453 1.14105 1.20730 1.24183 0.93600 0.95813 1.04665 1.22702 0.95789 0.95989 1.06334 1.21541 0.92496 0.89460 1.15363 1.17002 0.85506 0.83568 0.75851 1.90765 1.17460 1.84924 1.51463 1.45602 1.10178 1.05379 1.73172 1.19806 0.98608 0.79435 0.92762 0.90101 1.21711 0.98728 0.99901 0.93748 1.21583 0.98152 0.99780 0.95424 1.20837 0.96454 0.95933 0.84348 1.42631 1.45870 1.40598 1.10129 1.19638 1.12857 1.11972 0.93459 0.90524 1.25593 1.02432 0.99753 0.99126 1.69814 1.44927 1.30446 1.17025 0.85204 0.79066 0.77763 0.77698 1.20105 1.22247 1.20388 1.20165 0.96081 0.98512 0.95432 1.21122 0.99478 0.99878 0.92780 1.21433 0.98224 0.97663 0.97363 1.21476 0.94953 0.98389 0.99795 1.21390 1.00272 1.00223 0.92753 1.21198 0.96972 0.97782 0.98091 0.89559 0.86926 0.88126 0.76721 0.79363 0.74637 0.89307 0.89109 0.91857 0.93205 0.96380 0.95482 0.79666 0.94032 0.85123 0.84222 0.84147 0.84472 0.85928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.61 10.71 127.77 1.37 2.98 16 2 N -0.27 -6.56 3.75 -356.02 -1.33 -7.89 16 3 N -0.30 -7.30 11.90 -57.14 -0.68 -7.98 16 4 C -0.01 -0.15 12.03 85.18 1.02 0.88 16 5 C -0.18 -3.40 10.50 22.66 0.24 -3.16 16 6 C -0.06 -1.43 6.96 40.79 0.28 -1.14 16 7 C 0.59 14.83 7.74 86.59 0.67 15.50 16 8 O -0.57 -17.14 14.52 -4.11 -0.06 -17.20 16 9 N -0.69 -13.88 3.75 -449.63 -1.68 -15.56 16 10 C 0.20 4.21 2.13 44.25 0.09 4.31 16 11 H 0.08 2.05 7.53 -2.39 -0.02 2.03 16 12 C -0.10 -2.15 4.73 30.59 0.14 -2.01 16 13 C -0.11 -3.25 5.21 30.59 0.16 -3.09 16 14 C 0.15 5.71 6.26 86.38 0.54 6.25 16 15 N -0.75 -38.17 5.60 -343.45 -1.92 -40.09 16 16 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 17 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 18 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 19 N -0.97 -60.02 13.06 21.65 0.28 -59.74 16 20 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 C -0.10 -2.08 4.91 -19.87 -0.10 -2.18 16 25 C -0.11 -2.08 9.32 22.27 0.21 -1.88 16 26 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 27 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 28 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 29 C -0.12 -2.52 9.67 22.27 0.22 -2.30 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.10 2.06 6.55 -2.39 -0.02 2.05 16 33 H 0.22 2.64 8.06 -2.91 -0.02 2.62 16 34 H 0.19 2.32 7.58 -2.91 -0.02 2.29 16 35 H 0.42 6.38 7.63 -92.70 -0.71 5.68 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.06 1.85 7.75 -2.38 -0.02 1.83 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.37 20.30 7.67 -92.71 -0.71 19.58 16 43 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 44 H 0.13 1.94 7.71 -2.91 -0.02 1.92 16 45 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 46 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 47 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 48 H 0.12 2.41 8.04 -2.91 -0.02 2.38 16 Total: -1.00 -75.57 405.10 3.01 -72.56 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: -0.44 Total: 36.45 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 6.83 Total: -8.63 kcal Atomic # 7 Polarization: -125.92 SS G_CDS: -5.34 Total: -131.26 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.06 Total: -17.20 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -75.57 3.01 -72.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485778291.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.091 kcal (2) G-P(sol) polarization free energy of solvation -75.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.94 seconds