Wall clock time and date at job start Wed Apr 1 2020 04:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35856 * 126.13484 * 2 1 4 4 N 1.30167 * 109.00133 * 179.75582 * 3 2 1 5 5 C 1.35752 * 108.87060 * 0.39008 * 4 3 2 6 6 C 1.47326 * 126.24148 * 179.88274 * 5 4 3 7 7 O 1.21620 * 120.00395 * 179.68427 * 6 5 4 8 8 N 1.34777 * 119.99607 * 359.68181 * 6 5 4 9 9 C 1.46494 * 120.00188 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47081 * 325.00162 * 9 8 6 11 11 C 1.53001 * 109.47302 * 205.00083 * 9 8 6 12 12 C 1.52993 * 109.47184 * 64.99847 * 11 9 8 13 13 C 1.53001 * 109.47184 * 179.97438 * 12 11 9 14 14 N 1.46506 * 109.47289 * 179.97438 * 13 12 11 15 15 C 1.36938 * 120.00086 * 179.97438 * 14 13 12 16 16 H 1.07993 * 119.99982 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99750 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99525 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00224 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47103 * 89.99919 * 19 17 15 21 21 H 1.48496 * 109.47061 * 210.00165 * 19 17 15 22 22 H 1.48496 * 109.46831 * 329.99991 * 19 17 15 23 23 C 1.50703 * 109.47581 * 84.99858 * 9 8 6 24 24 C 1.38235 * 120.00292 * 220.00303 * 23 9 8 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 9 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 39.97596 * 23 9 8 29 29 C 1.35379 * 126.13887 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47106 * 270.00082 * 1 2 3 31 31 H 1.09003 * 109.47127 * 30.00434 * 1 2 3 32 32 H 1.08998 * 109.46917 * 149.99583 * 1 2 3 33 33 H 1.07995 * 125.49784 * 0.02562 * 3 2 1 34 34 H 0.97005 * 119.99889 * 0.02562 * 8 6 5 35 35 H 1.09007 * 109.47213 * 184.99910 * 11 9 8 36 36 H 1.08998 * 109.47120 * 304.99384 * 11 9 8 37 37 H 1.09001 * 109.47226 * 299.99717 * 12 11 9 38 38 H 1.08995 * 109.47539 * 60.00280 * 12 11 9 39 39 H 1.09000 * 109.47541 * 299.99853 * 13 12 11 40 40 H 1.09000 * 109.47281 * 60.00054 * 13 12 11 41 41 H 0.96998 * 119.99754 * 0.02562 * 14 13 12 42 42 H 0.97004 * 119.99462 * 180.02562 * 18 17 15 43 43 H 1.08001 * 119.99730 * 359.97438 * 24 23 9 44 44 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 46 46 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.00455 * 0.02562 * 28 23 9 48 48 H 1.08001 * 126.56018 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0972 0.0000 4 7 3.5100 0.7137 0.0052 5 6 3.5512 -0.6431 0.0001 6 6 4.7653 -1.4777 0.0009 7 8 4.6699 -2.6901 0.0016 8 7 5.9818 -0.8974 0.0008 9 6 7.1891 -1.7271 0.0011 10 1 7.0117 -2.6266 0.5907 11 6 8.3498 -0.9384 0.6106 12 6 8.0544 -0.6532 2.0844 13 6 9.2154 0.1349 2.6941 14 7 8.9322 0.4086 4.1053 15 6 9.8357 1.1056 4.8623 16 1 10.7568 1.4540 4.4190 17 6 9.5676 1.3644 6.1994 18 7 10.4357 2.0349 6.9269 19 14 7.9747 0.7612 6.9664 20 1 8.1793 -0.5985 7.5275 21 1 7.5658 1.6883 8.0519 22 1 6.9128 0.7141 5.9295 23 6 7.5331 -2.1141 -1.4142 24 6 7.9843 -3.3910 -1.6914 25 6 8.2993 -3.7461 -2.9896 26 6 8.1624 -2.8246 -4.0109 27 6 7.7098 -1.5481 -3.7339 28 6 7.3969 -1.1923 -2.4352 29 6 2.2634 -1.0933 0.0005 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8899 -0.5139 33 1 1.9258 2.1222 0.0004 34 1 6.0578 0.0696 0.0006 35 1 9.2673 -1.5216 0.5302 36 1 8.4700 0.0034 0.0752 37 1 7.1370 -0.0700 2.1649 38 1 7.9344 -1.5950 2.6198 39 1 10.1326 -0.4486 2.6138 40 1 9.3360 1.0768 2.1589 41 1 8.1051 0.0953 4.5035 42 1 10.2485 2.2154 7.8614 43 1 8.0907 -4.1112 -0.8936 44 1 8.6522 -4.7436 -3.2062 45 1 8.4127 -3.1006 -5.0245 46 1 7.6032 -0.8280 -4.5316 47 1 7.0444 -0.1947 -2.2187 48 1 1.9422 -2.1245 0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485778905.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:50 Heat of formation + Delta-G solvation = 59.216651 kcal Electronic energy + Delta-G solvation = -28823.485400 eV Core-core repulsion = 24879.548065 eV Total energy + Delta-G solvation = -3943.937334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 27.19 seconds Orbital eigenvalues (eV) -42.44399 -40.09368 -38.68813 -36.45879 -34.86847 -34.49828 -32.48171 -31.53884 -30.90772 -30.41765 -30.04511 -27.87780 -26.97088 -24.33076 -23.35099 -22.63715 -22.00493 -21.54591 -20.87601 -20.57200 -20.12521 -18.20429 -17.49439 -17.01395 -16.43501 -16.24691 -16.07744 -15.45947 -14.83118 -14.73124 -14.63542 -14.49496 -14.28121 -14.06968 -13.91062 -13.64445 -13.46579 -13.35316 -13.26454 -13.06269 -12.91729 -12.65654 -12.23027 -11.98254 -11.68383 -11.30884 -11.08339 -10.89743 -10.86409 -10.58933 -10.46241 -10.44514 -10.11257 -10.06242 -10.06021 -9.53452 -9.17748 -8.95983 -8.86996 -8.82335 -8.73083 -7.15608 -5.71017 -3.05591 1.27345 1.35975 1.37269 2.18292 2.26574 3.22201 3.42825 3.46732 3.48093 3.49593 3.74966 4.16385 4.19734 4.44743 4.56360 4.60752 4.65299 4.81300 4.83467 4.88217 4.91067 5.02801 5.05926 5.19556 5.19773 5.34510 5.44592 5.50702 5.58700 5.66032 5.68613 5.84936 5.91654 5.97907 6.05139 6.10866 6.13938 6.17476 6.36686 6.38946 6.41289 6.44359 6.62302 6.68698 6.84274 6.87860 6.94084 7.37948 7.67716 8.06414 8.25982 8.48628 9.28360 10.01128 10.21576 11.47679 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.006811 B = 0.003347 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4110.172951 B = 8364.825566 C =11684.422006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.462 5.462 3 C 0.186 3.814 4 N -0.460 5.460 5 C -0.061 4.061 6 C 0.607 3.393 7 O -0.544 6.544 8 N -0.705 5.705 9 C 0.185 3.815 10 H 0.098 0.902 11 C -0.116 4.116 12 C -0.130 4.130 13 C 0.158 3.842 14 N -0.758 5.758 15 C -0.241 4.241 16 H 0.090 0.910 17 C 0.002 3.998 18 N -0.936 5.936 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.087 4.087 24 C -0.104 4.104 25 C -0.121 4.121 26 C -0.125 4.125 27 C -0.123 4.123 28 C -0.104 4.104 29 C 0.031 3.969 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.212 0.788 34 H 0.410 0.590 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.893 -7.335 -23.798 31.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.144 5.144 3 C -0.098 4.098 4 N -0.179 5.179 5 C -0.190 4.190 6 C 0.393 3.607 7 O -0.422 6.422 8 N -0.356 5.356 9 C 0.081 3.919 10 H 0.116 0.884 11 C -0.155 4.155 12 C -0.167 4.167 13 C 0.031 3.969 14 N -0.403 5.403 15 C -0.371 4.371 16 H 0.108 0.892 17 C -0.193 4.193 18 N -0.585 5.585 19 Si 0.715 3.285 20 H -0.211 1.211 21 H -0.218 1.218 22 H -0.203 1.203 23 C -0.088 4.088 24 C -0.122 4.122 25 C -0.139 4.139 26 C -0.143 4.143 27 C -0.141 4.141 28 C -0.122 4.122 29 C -0.108 4.108 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.229 0.771 34 H 0.246 0.754 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -19.172 -7.546 -23.710 31.411 hybrid contribution -1.915 -0.285 0.665 2.047 sum -21.088 -7.831 -23.045 32.204 Atomic orbital electron populations 1.22151 0.75801 1.05103 1.04165 1.45361 1.08267 1.06945 1.53842 1.25224 0.85148 0.93610 1.05831 1.70616 1.19549 1.10311 1.17420 1.20579 0.93172 0.90573 1.14672 1.16864 0.81994 0.86322 0.75496 1.90787 1.86850 1.13400 1.51130 1.45808 1.04571 1.10886 1.74295 1.19957 0.84446 0.95322 0.92218 0.88386 1.21808 0.96920 1.00505 0.96239 1.21789 0.99950 1.00959 0.94051 1.20616 0.94805 0.96283 0.85229 1.42737 1.22276 1.68231 1.07078 1.19088 0.99623 1.26558 0.91847 0.89234 1.24671 0.97864 1.00438 0.96361 1.69710 1.35758 1.45306 1.07705 0.86534 0.84607 0.78389 0.78980 1.21096 1.21771 1.20324 1.20234 0.98927 0.94064 0.95614 1.21019 0.98738 0.95629 0.96859 1.21101 1.00463 0.99452 0.92933 1.21114 1.00261 0.93912 0.99020 1.21104 0.99896 0.96545 0.96570 1.20945 0.99402 0.99330 0.92508 1.22594 0.90267 0.93194 1.04710 0.89994 0.88971 0.89297 0.77141 0.75407 0.89887 0.90936 0.91782 0.91930 0.95591 0.95646 0.80720 0.93138 0.85925 0.86193 0.86427 0.86349 0.86275 0.79578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.17 11.15 59.85 0.67 0.84 16 2 N -0.46 -3.32 3.13 -125.78 -0.39 -3.71 16 3 C 0.19 1.56 12.55 -89.90 -1.13 0.43 16 4 N -0.46 -5.54 11.01 -11.03 -0.12 -5.66 16 5 C -0.06 -0.77 6.98 -83.09 -0.58 -1.35 16 6 C 0.61 8.74 7.77 -12.56 -0.10 8.64 16 7 O -0.54 -9.12 16.54 5.26 0.09 -9.03 16 8 N -0.71 -9.08 3.77 -56.04 -0.21 -9.29 16 9 C 0.19 2.33 2.17 -69.08 -0.15 2.18 16 10 H 0.10 1.36 7.44 -51.93 -0.39 0.97 16 11 C -0.12 -1.47 4.73 -26.73 -0.13 -1.59 16 12 C -0.13 -2.05 5.22 -26.73 -0.14 -2.19 16 13 C 0.16 3.15 6.26 -4.04 -0.03 3.13 16 14 N -0.76 -18.97 5.41 -59.91 -0.32 -19.29 16 15 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 16 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 17 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 18 N -0.94 -30.23 13.97 55.49 0.78 -29.45 16 19 Si 0.88 22.96 27.74 -169.99 -4.71 18.24 16 20 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 22 H -0.28 -6.84 6.52 56.52 0.37 -6.47 16 23 C -0.09 -1.06 4.91 -104.62 -0.51 -1.58 16 24 C -0.10 -1.21 9.67 -39.59 -0.38 -1.59 16 25 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 26 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 27 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 28 C -0.10 -1.19 9.32 -39.58 -0.37 -1.56 16 29 C 0.03 0.31 11.26 -16.64 -0.19 0.12 16 30 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.05 8.14 -51.93 -0.42 -0.38 16 32 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.21 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.41 5.02 8.32 -40.82 -0.34 4.68 16 35 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 1.04 7.75 -51.93 -0.40 0.64 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.36 8.86 5.53 -40.82 -0.23 8.63 16 42 H 0.26 7.92 8.31 -40.82 -0.34 7.59 16 43 H 0.12 1.30 8.04 -52.49 -0.42 0.88 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.12 1.28 7.72 -52.49 -0.41 0.88 16 48 H 0.19 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 406.97 15.07 6.13 6.13 Total: -1.00 -38.23 406.97 -10.52 -48.75 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -7.27 Total: 10.12 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -4.48 Total: -6.81 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -0.27 Total: -67.41 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.71 Total: 18.24 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -38.23 -10.52 -48.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485778905.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.968 kcal (2) G-P(sol) polarization free energy of solvation -38.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 27.19 seconds