Wall clock time and date at job start Wed Apr 1 2020 04:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28445 * 125.19177 * 2 1 4 4 C 1.30858 * 110.92640 * 180.02562 * 3 2 1 5 5 C 1.39674 * 107.86363 * 359.76915 * 4 3 2 6 6 C 1.36606 * 125.18841 * 180.02562 * 2 1 3 7 7 C 1.47154 * 126.88378 * 359.94017 * 6 2 1 8 8 O 1.21629 * 120.00397 * 28.02295 * 7 6 2 9 9 N 1.34780 * 120.00027 * 208.02580 * 7 6 2 10 10 C 1.46505 * 120.00232 * 174.91438 * 9 7 6 11 11 C 1.52991 * 109.46930 * 89.99810 * 10 9 7 12 12 C 1.53001 * 109.47080 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47247 * 180.02562 * 12 11 10 14 14 C 1.36940 * 120.00432 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99233 * 359.97438 * 14 13 12 16 16 C 1.38803 * 120.00330 * 179.97438 * 14 13 12 17 17 N 1.31619 * 120.00155 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00115 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47280 * 89.99805 * 18 16 14 20 20 H 1.48501 * 109.47347 * 210.00158 * 18 16 14 21 21 H 1.48503 * 109.47288 * 329.99872 * 18 16 14 22 22 C 1.46497 * 119.99811 * 354.91805 * 9 7 6 23 23 C 1.50697 * 109.46944 * 252.84805 * 22 9 7 24 24 C 1.38236 * 120.00394 * 261.57176 * 23 22 9 25 25 C 1.38232 * 120.00215 * 179.76578 * 24 23 22 26 26 C 1.38240 * 119.99742 * 0.50886 * 25 24 23 27 27 C 1.38231 * 120.00106 * 359.74695 * 26 25 24 28 28 C 1.38237 * 120.00134 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.47453 * 264.52418 * 1 2 3 30 30 H 1.09004 * 109.47311 * 24.52589 * 1 2 3 31 31 H 1.09006 * 109.47649 * 144.52072 * 1 2 3 32 32 H 1.08005 * 126.06656 * 180.02562 * 4 3 2 33 33 H 1.07999 * 127.32484 * 180.26756 * 5 4 3 34 34 H 1.09006 * 109.46402 * 330.00234 * 10 9 7 35 35 H 1.09000 * 109.47139 * 210.00210 * 10 9 7 36 36 H 1.09000 * 109.47536 * 300.00156 * 11 10 9 37 37 H 1.09009 * 109.46894 * 60.00251 * 11 10 9 38 38 H 1.09000 * 109.47094 * 300.00465 * 12 11 10 39 39 H 1.08999 * 109.47131 * 60.00301 * 12 11 10 40 40 H 0.97006 * 120.00031 * 359.97438 * 13 12 11 41 41 H 0.97005 * 120.00008 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.47108 * 12.84730 * 22 9 7 43 43 H 1.09003 * 109.47038 * 132.84856 * 22 9 7 44 44 H 1.08001 * 119.99443 * 0.02562 * 24 23 22 45 45 H 1.08003 * 119.99978 * 180.23261 * 25 24 23 46 46 H 1.08000 * 119.99348 * 179.72052 * 26 25 24 47 47 H 1.08004 * 119.99720 * 179.97438 * 27 26 25 48 48 H 1.07995 * 119.99805 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4734 0.7272 -0.0005 5 6 3.5611 -0.6667 0.0044 6 6 2.2522 -1.1164 -0.0005 7 6 1.7992 -2.5165 0.0001 8 8 0.7269 -2.8091 -0.4938 9 7 2.5726 -3.4748 0.5480 10 6 2.0749 -4.8490 0.6491 11 6 2.4550 -5.6233 -0.6144 12 6 1.9358 -7.0586 -0.5086 13 7 2.3004 -7.8002 -1.7182 14 6 1.9391 -9.1145 -1.8507 15 1 1.3858 -9.6043 -1.0630 16 6 2.2841 -9.8170 -2.9970 17 7 2.9579 -9.2198 -3.9571 18 14 1.7907 -11.6095 -3.1779 19 1 0.4579 -11.6930 -3.8275 20 1 2.7938 -12.3171 -4.0135 21 1 1.7281 -12.2435 -1.8365 22 6 3.9108 -3.1422 1.0426 23 6 4.9472 -3.7055 0.1048 24 6 5.5689 -4.9041 0.4011 25 6 6.5161 -5.4233 -0.4615 26 6 6.8492 -4.7386 -1.6153 27 6 6.2314 -3.5374 -1.9090 28 6 5.2800 -3.0211 -1.0492 29 1 -0.3634 -0.0981 1.0229 30 1 -0.3634 0.9350 -0.4266 31 1 -0.3634 -0.8369 -0.5965 32 1 4.3048 1.4167 -0.0003 33 1 4.4593 -1.2664 0.0094 34 1 0.9900 -4.8356 0.7545 35 1 2.5185 -5.3330 1.5192 36 1 2.0114 -5.1393 -1.4845 37 1 3.5399 -5.6365 -0.7198 38 1 2.3798 -7.5423 0.3614 39 1 0.8510 -7.0457 -0.4030 40 1 2.7970 -7.3601 -2.4258 41 1 3.1993 -9.7109 -4.7581 42 1 4.0196 -2.0589 1.0959 43 1 4.0481 -3.5705 2.0355 44 1 5.3115 -5.4370 1.3046 45 1 6.9991 -6.3616 -0.2318 46 1 7.5925 -5.1421 -2.2870 47 1 6.4920 -3.0024 -2.8103 48 1 4.7977 -2.0825 -1.2785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506966509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:09 Heat of formation + Delta-G solvation = 112.528556 kcal Electronic energy + Delta-G solvation = -30179.909423 eV Core-core repulsion = 26238.283866 eV Total energy + Delta-G solvation = -3941.625557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 7.46 seconds Orbital eigenvalues (eV) -42.86005 -40.16851 -38.91188 -36.31805 -35.07541 -33.57422 -32.75801 -31.42840 -31.29190 -30.73769 -29.40526 -27.40628 -26.38585 -25.55979 -23.37194 -23.07152 -22.12755 -21.54189 -21.35835 -20.77304 -19.66211 -17.63947 -17.09515 -16.96542 -16.79589 -16.25679 -15.79966 -15.57126 -15.19961 -14.77130 -14.56260 -14.45215 -14.17620 -14.12980 -13.53275 -13.28939 -13.20462 -13.18542 -13.08882 -13.03799 -12.71094 -12.47527 -12.26450 -11.96837 -11.84923 -11.25399 -11.10596 -10.86866 -10.82596 -10.72760 -10.58804 -10.33933 -10.16502 -9.99551 -9.68012 -9.44383 -9.22017 -8.89770 -8.85682 -8.80106 -8.64071 -6.85808 -5.70953 -2.99328 1.06454 1.29917 1.45051 2.11435 2.35276 2.91510 2.95253 3.46373 3.51095 3.52826 3.82018 4.21313 4.29182 4.61224 4.64706 4.69186 4.84871 4.89845 4.94158 5.03573 5.06664 5.16924 5.20384 5.25754 5.31630 5.38391 5.42720 5.45701 5.56829 5.61343 5.63934 5.72070 5.90801 5.99486 6.05137 6.12287 6.19223 6.33967 6.42835 6.44802 6.47074 6.50123 6.57269 6.59793 6.93220 6.94496 7.02011 7.16797 7.74107 7.77228 7.93995 8.47772 9.58635 10.18207 10.52924 11.51987 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.012143 B = 0.003126 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.266148 B = 8953.890711 C =10390.319194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.259 5.259 3 N -0.281 5.281 4 C 0.000 4.000 5 C -0.221 4.221 6 C -0.025 4.025 7 C 0.587 3.413 8 O -0.529 6.529 9 N -0.584 5.584 10 C 0.124 3.876 11 C -0.143 4.143 12 C 0.158 3.842 13 N -0.731 5.731 14 C -0.237 4.237 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.933 5.933 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C 0.110 3.890 23 C -0.109 4.109 24 C -0.098 4.098 25 C -0.111 4.111 26 C -0.110 4.110 27 C -0.117 4.117 28 C -0.121 4.121 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.188 0.812 33 H 0.184 0.816 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.016 0.984 39 H 0.017 0.983 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.122 0.878 43 H 0.085 0.915 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.628 20.840 12.603 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.046 5.046 3 N -0.114 5.114 4 C -0.176 4.176 5 C -0.249 4.249 6 C -0.154 4.154 7 C 0.373 3.627 8 O -0.405 6.405 9 N -0.315 5.315 10 C 0.002 3.998 11 C -0.181 4.181 12 C 0.030 3.970 13 N -0.375 5.375 14 C -0.368 4.368 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.582 5.582 18 Si 0.737 3.263 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.011 4.011 23 C -0.110 4.110 24 C -0.116 4.116 25 C -0.129 4.129 26 C -0.128 4.128 27 C -0.135 4.135 28 C -0.139 4.139 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.130 0.870 32 H 0.205 0.795 33 H 0.201 0.799 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.034 0.966 39 H 0.035 0.965 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.139 0.861 43 H 0.103 0.897 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.047 21.422 12.407 25.084 hybrid contribution 0.550 -1.683 -0.600 1.870 sum 4.597 19.739 11.807 23.455 Atomic orbital electron populations 1.22383 0.72543 1.06279 1.04779 1.45639 1.07895 1.01670 1.49395 1.73218 1.04440 1.13578 1.20117 1.23628 0.93500 0.94959 1.05562 1.22986 0.96424 0.95763 1.09737 1.21480 0.91602 0.89768 1.12551 1.16985 0.84195 0.83042 0.78487 1.90828 1.22686 1.82537 1.44484 1.47687 1.15289 1.09148 1.59411 1.21555 1.00445 0.78873 0.98958 1.22149 1.02279 0.96448 0.97272 1.20518 0.96577 0.89111 0.90802 1.42332 1.67453 1.09891 1.17845 1.19236 1.28845 0.87299 1.01450 0.91249 1.24732 1.01211 0.98284 0.96866 1.69673 1.44215 1.35971 1.08345 0.86199 0.77657 0.85025 0.77381 1.21763 1.21812 1.20794 1.21372 0.79823 1.03875 0.96079 1.20013 0.97913 0.96263 0.96798 1.21012 0.96118 0.94726 0.99788 1.21177 0.97693 0.99502 0.94560 1.21212 0.99742 0.94972 0.96916 1.21120 0.96837 0.96365 0.99163 1.21246 0.97906 1.00387 0.94335 0.89836 0.88459 0.87040 0.79548 0.79948 0.89721 0.90198 0.91745 0.90959 0.96581 0.96477 0.78310 0.93609 0.86072 0.89705 0.86061 0.85885 0.86084 0.86137 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.99 59.84 0.66 1.37 16 2 N -0.26 -2.99 3.75 -63.88 -0.24 -3.23 16 3 N -0.28 -3.20 11.90 30.59 0.36 -2.83 16 4 C 0.00 0.00 12.03 -17.43 -0.21 -0.21 16 5 C -0.22 -2.15 7.60 -38.98 -0.30 -2.45 16 6 C -0.02 -0.30 6.58 -82.06 -0.54 -0.84 16 7 C 0.59 8.14 7.52 -12.64 -0.09 8.04 16 8 O -0.53 -8.93 14.79 5.25 0.08 -8.85 16 9 N -0.58 -7.16 2.55 -176.43 -0.45 -7.61 16 10 C 0.12 1.68 5.31 -4.04 -0.02 1.66 16 11 C -0.14 -2.49 5.44 -26.74 -0.15 -2.64 16 12 C 0.16 3.32 6.26 -4.04 -0.03 3.30 16 13 N -0.73 -19.44 5.60 -59.91 -0.34 -19.77 16 14 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 15 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 16 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 17 N -0.93 -28.98 13.06 55.49 0.72 -28.25 16 18 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.11 1.05 5.41 -5.20 -0.03 1.02 16 23 C -0.11 -1.18 4.19 -104.62 -0.44 -1.62 16 24 C -0.10 -1.12 8.12 -39.58 -0.32 -1.44 16 25 C -0.11 -1.36 10.05 -39.58 -0.40 -1.76 16 26 C -0.11 -1.33 10.05 -39.58 -0.40 -1.73 16 27 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 28 C -0.12 -1.35 8.95 -39.58 -0.35 -1.70 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.11 1.14 6.45 -51.93 -0.34 0.80 16 32 H 0.19 1.10 8.06 -52.48 -0.42 0.67 16 33 H 0.18 1.49 3.09 -52.49 -0.16 1.33 16 34 H 0.08 1.22 7.50 -51.93 -0.39 0.83 16 35 H 0.08 0.90 8.07 -51.93 -0.42 0.49 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.27 5.42 -51.92 -0.28 0.99 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.38 10.83 7.67 -40.82 -0.31 10.52 16 41 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.12 1.01 3.32 -51.93 -0.17 0.83 16 43 H 0.08 0.65 8.02 -51.93 -0.42 0.23 16 44 H 0.12 1.21 8.05 -52.49 -0.42 0.79 16 45 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 46 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 47 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 48 H 0.13 1.29 5.13 -52.49 -0.27 1.02 16 LS Contribution 388.37 15.07 5.85 5.85 Total: -1.00 -35.65 388.37 -8.82 -44.47 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -6.53 Total: 10.67 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -3.26 Total: -8.31 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 0.06 Total: -61.70 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.08 Total: -8.85 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.65 -8.82 -44.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506966509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.001 kcal (2) G-P(sol) polarization free energy of solvation -35.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.46 seconds