Wall clock time and date at job start Wed Apr 1 2020 04:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28445 * 125.19177 * 2 1 4 4 C 1.30858 * 110.92640 * 180.02562 * 3 2 1 5 5 C 1.39674 * 107.86363 * 359.76915 * 4 3 2 6 6 C 1.36606 * 125.18841 * 180.02562 * 2 1 3 7 7 C 1.47154 * 126.88378 * 359.94017 * 6 2 1 8 8 O 1.21629 * 120.00397 * 28.02295 * 7 6 2 9 9 N 1.34780 * 120.00027 * 208.02580 * 7 6 2 10 10 C 1.46505 * 120.00232 * 174.91438 * 9 7 6 11 11 C 1.52991 * 109.46930 * 89.99810 * 10 9 7 12 12 C 1.53001 * 109.47080 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47247 * 180.02562 * 12 11 10 14 14 C 1.36940 * 120.00432 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99233 * 359.97438 * 14 13 12 16 16 C 1.38803 * 120.00330 * 179.97438 * 14 13 12 17 17 N 1.31619 * 120.00155 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00115 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47280 * 89.99805 * 18 16 14 20 20 H 1.48501 * 109.47347 * 210.00158 * 18 16 14 21 21 H 1.48503 * 109.47288 * 329.99872 * 18 16 14 22 22 C 1.46497 * 119.99811 * 354.91805 * 9 7 6 23 23 C 1.50697 * 109.46944 * 252.84805 * 22 9 7 24 24 C 1.38236 * 120.00394 * 261.57176 * 23 22 9 25 25 C 1.38232 * 120.00215 * 179.76578 * 24 23 22 26 26 C 1.38240 * 119.99742 * 0.50886 * 25 24 23 27 27 C 1.38231 * 120.00106 * 359.74695 * 26 25 24 28 28 C 1.38237 * 120.00134 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.47453 * 264.52418 * 1 2 3 30 30 H 1.09004 * 109.47311 * 24.52589 * 1 2 3 31 31 H 1.09006 * 109.47649 * 144.52072 * 1 2 3 32 32 H 1.08005 * 126.06656 * 180.02562 * 4 3 2 33 33 H 1.07999 * 127.32484 * 180.26756 * 5 4 3 34 34 H 1.09006 * 109.46402 * 330.00234 * 10 9 7 35 35 H 1.09000 * 109.47139 * 210.00210 * 10 9 7 36 36 H 1.09000 * 109.47536 * 300.00156 * 11 10 9 37 37 H 1.09009 * 109.46894 * 60.00251 * 11 10 9 38 38 H 1.09000 * 109.47094 * 300.00465 * 12 11 10 39 39 H 1.08999 * 109.47131 * 60.00301 * 12 11 10 40 40 H 0.97006 * 120.00031 * 359.97438 * 13 12 11 41 41 H 0.97005 * 120.00008 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.47108 * 12.84730 * 22 9 7 43 43 H 1.09003 * 109.47038 * 132.84856 * 22 9 7 44 44 H 1.08001 * 119.99443 * 0.02562 * 24 23 22 45 45 H 1.08003 * 119.99978 * 180.23261 * 25 24 23 46 46 H 1.08000 * 119.99348 * 179.72052 * 26 25 24 47 47 H 1.08004 * 119.99720 * 179.97438 * 27 26 25 48 48 H 1.07995 * 119.99805 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4734 0.7272 -0.0005 5 6 3.5611 -0.6667 0.0044 6 6 2.2522 -1.1164 -0.0005 7 6 1.7992 -2.5165 0.0001 8 8 0.7269 -2.8091 -0.4938 9 7 2.5726 -3.4748 0.5480 10 6 2.0749 -4.8490 0.6491 11 6 2.4550 -5.6233 -0.6144 12 6 1.9358 -7.0586 -0.5086 13 7 2.3004 -7.8002 -1.7182 14 6 1.9391 -9.1145 -1.8507 15 1 1.3858 -9.6043 -1.0630 16 6 2.2841 -9.8170 -2.9970 17 7 2.9579 -9.2198 -3.9571 18 14 1.7907 -11.6095 -3.1779 19 1 0.4579 -11.6930 -3.8275 20 1 2.7938 -12.3171 -4.0135 21 1 1.7281 -12.2435 -1.8365 22 6 3.9108 -3.1422 1.0426 23 6 4.9472 -3.7055 0.1048 24 6 5.5689 -4.9041 0.4011 25 6 6.5161 -5.4233 -0.4615 26 6 6.8492 -4.7386 -1.6153 27 6 6.2314 -3.5374 -1.9090 28 6 5.2800 -3.0211 -1.0492 29 1 -0.3634 -0.0981 1.0229 30 1 -0.3634 0.9350 -0.4266 31 1 -0.3634 -0.8369 -0.5965 32 1 4.3048 1.4167 -0.0003 33 1 4.4593 -1.2664 0.0094 34 1 0.9900 -4.8356 0.7545 35 1 2.5185 -5.3330 1.5192 36 1 2.0114 -5.1393 -1.4845 37 1 3.5399 -5.6365 -0.7198 38 1 2.3798 -7.5423 0.3614 39 1 0.8510 -7.0457 -0.4030 40 1 2.7970 -7.3601 -2.4258 41 1 3.1993 -9.7109 -4.7581 42 1 4.0196 -2.0589 1.0959 43 1 4.0481 -3.5705 2.0355 44 1 5.3115 -5.4370 1.3046 45 1 6.9991 -6.3616 -0.2318 46 1 7.5925 -5.1421 -2.2870 47 1 6.4920 -3.0024 -2.8103 48 1 4.7977 -2.0825 -1.2785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506966509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:05 Heat of formation + Delta-G solvation = 90.488769 kcal Electronic energy + Delta-G solvation = -30180.865140 eV Core-core repulsion = 26238.283866 eV Total energy + Delta-G solvation = -3942.581273 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 4.67 seconds Orbital eigenvalues (eV) -43.66779 -41.14011 -39.86293 -37.55495 -36.69930 -34.59753 -34.12050 -32.78669 -32.27132 -31.64652 -30.96414 -28.14534 -27.49405 -26.92175 -25.03086 -23.99427 -23.22982 -22.66739 -22.25082 -22.11667 -20.53395 -19.14965 -18.55716 -17.98751 -17.69199 -17.12530 -16.91218 -16.50626 -16.44355 -16.08350 -15.90985 -15.64460 -15.34950 -15.18704 -14.98768 -14.80633 -14.36513 -14.13219 -14.02850 -13.80781 -13.56590 -13.49929 -13.44419 -13.33650 -12.97293 -12.77673 -12.71691 -12.38453 -12.13382 -12.04803 -11.94933 -11.81911 -11.77724 -11.39502 -11.18742 -10.94513 -10.29991 -10.00999 -9.90947 -9.74468 -9.57147 -9.01417 -7.95341 -5.25111 0.16843 0.40643 0.55809 1.30388 1.45795 1.48473 1.56741 1.59907 1.94253 2.04692 2.55579 2.92409 3.32189 3.38021 3.57905 3.76232 3.87712 3.94472 4.04143 4.13262 4.15235 4.22678 4.24833 4.27035 4.32957 4.35967 4.49484 4.55448 4.60497 4.61242 4.64963 4.71736 4.73488 4.75786 4.81197 4.86864 5.13537 5.17722 5.26440 5.32730 5.40554 5.47478 5.48495 5.61215 5.67931 5.69410 5.70256 6.13423 6.17860 6.26008 6.86840 7.03540 7.31662 8.07378 8.30916 9.28393 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.012143 B = 0.003126 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.266148 B = 8953.890711 C =10390.319194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.268 5.268 3 N -0.297 5.297 4 C 0.003 3.997 5 C -0.208 4.208 6 C -0.048 4.048 7 C 0.583 3.417 8 O -0.569 6.569 9 N -0.579 5.579 10 C 0.131 3.869 11 C -0.123 4.123 12 C 0.157 3.843 13 N -0.746 5.746 14 C -0.246 4.246 15 H 0.077 0.923 16 C -0.077 4.077 17 N -0.970 5.970 18 Si 0.975 3.025 19 H -0.289 1.289 20 H -0.294 1.294 21 H -0.266 1.266 22 C 0.110 3.890 23 C -0.110 4.110 24 C -0.104 4.104 25 C -0.131 4.131 26 C -0.127 4.127 27 C -0.129 4.129 28 C -0.127 4.127 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.222 0.778 33 H 0.199 0.801 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.013 0.987 40 H 0.370 0.630 41 H 0.251 0.749 42 H 0.136 0.864 43 H 0.113 0.887 44 H 0.138 0.862 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.134 0.866 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.203 21.458 14.531 26.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.056 5.056 3 N -0.130 5.130 4 C -0.172 4.172 5 C -0.236 4.236 6 C -0.177 4.177 7 C 0.371 3.629 8 O -0.449 6.449 9 N -0.309 5.309 10 C 0.008 3.992 11 C -0.162 4.162 12 C 0.030 3.970 13 N -0.389 5.389 14 C -0.378 4.378 15 H 0.095 0.905 16 C -0.269 4.269 17 N -0.621 5.621 18 Si 0.804 3.196 19 H -0.216 1.216 20 H -0.220 1.220 21 H -0.191 1.191 22 C -0.011 4.011 23 C -0.111 4.111 24 C -0.123 4.123 25 C -0.149 4.149 26 C -0.145 4.145 27 C -0.147 4.147 28 C -0.146 4.146 29 H 0.116 0.884 30 H 0.133 0.867 31 H 0.112 0.888 32 H 0.238 0.762 33 H 0.215 0.785 34 H 0.094 0.906 35 H 0.132 0.868 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.052 0.948 39 H 0.031 0.969 40 H 0.202 0.798 41 H 0.060 0.940 42 H 0.154 0.846 43 H 0.131 0.869 44 H 0.156 0.844 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.151 0.849 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.625 22.057 14.394 26.741 hybrid contribution 0.397 -1.805 -1.194 2.200 sum 5.022 20.252 13.201 24.690 Atomic orbital electron populations 1.22476 0.71818 1.06419 1.05537 1.45858 1.08576 1.01542 1.49592 1.73225 1.05387 1.13732 1.20649 1.24254 0.93697 0.95333 1.03954 1.23174 0.95898 0.96179 1.08328 1.21405 0.92714 0.89037 1.14534 1.17318 0.83773 0.84061 0.77760 1.90807 1.24502 1.83296 1.46269 1.47689 1.16154 1.08213 1.58808 1.21424 1.00383 0.79493 0.97883 1.21931 1.01624 0.94541 0.98086 1.20686 0.96417 0.90695 0.89214 1.42576 1.67365 1.09725 1.19206 1.19666 1.28160 0.88400 1.01569 0.90470 1.25609 1.01775 1.02778 0.96734 1.69842 1.45804 1.37627 1.08843 0.85111 0.76900 0.79763 0.77824 1.21600 1.22020 1.19059 1.21611 0.77665 1.05021 0.96787 1.20161 0.97977 0.96054 0.96879 1.21251 0.95805 0.94982 1.00226 1.21394 0.98444 0.99967 0.95069 1.21432 1.00325 0.95474 0.97312 1.21371 0.97005 0.96438 0.99884 1.21456 0.97755 1.00879 0.94463 0.88400 0.86742 0.88833 0.76161 0.78469 0.90618 0.86829 0.95116 0.90984 0.94790 0.96882 0.79838 0.94046 0.84639 0.86855 0.84417 0.85592 0.85487 0.84857 0.84585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 10.99 127.77 1.40 2.76 16 2 N -0.27 -5.92 3.75 -356.03 -1.33 -7.26 16 3 N -0.30 -6.22 11.90 -57.14 -0.68 -6.90 16 4 C 0.00 0.05 12.03 85.18 1.02 1.07 16 5 C -0.21 -3.56 7.60 22.66 0.17 -3.39 16 6 C -0.05 -1.10 6.58 40.78 0.27 -0.83 16 7 C 0.58 15.91 7.52 86.58 0.65 16.56 16 8 O -0.57 -19.71 14.79 -4.12 -0.06 -19.77 16 9 N -0.58 -13.29 2.55 -830.35 -2.11 -15.41 16 10 C 0.13 3.37 5.31 86.38 0.46 3.82 16 11 C -0.12 -4.27 5.44 30.59 0.17 -4.11 16 12 C 0.16 6.52 6.26 86.38 0.54 7.06 16 13 N -0.75 -40.09 5.60 -343.46 -1.92 -42.01 16 14 C -0.25 -14.24 9.99 84.03 0.84 -13.41 16 15 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 16 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 17 N -0.97 -61.24 13.06 21.65 0.28 -60.96 16 18 Si 0.98 47.09 29.55 68.60 2.03 49.12 16 19 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 20 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 22 C 0.11 1.77 5.41 85.63 0.46 2.24 16 23 C -0.11 -2.17 4.19 -19.87 -0.08 -2.26 16 24 C -0.10 -2.21 8.12 22.27 0.18 -2.03 16 25 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 26 C -0.13 -3.06 10.05 22.27 0.22 -2.83 16 27 C -0.13 -2.90 10.05 22.27 0.22 -2.68 16 28 C -0.13 -2.68 8.95 22.27 0.20 -2.48 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.09 2.00 6.45 -2.38 -0.02 1.98 16 32 H 0.22 1.75 8.06 -2.91 -0.02 1.72 16 33 H 0.20 2.67 3.09 -2.91 -0.01 2.66 16 34 H 0.08 2.13 7.50 -2.38 -0.02 2.11 16 35 H 0.11 2.19 8.07 -2.39 -0.02 2.17 16 36 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 2.51 5.42 -2.38 -0.01 2.49 16 38 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.37 21.48 7.67 -92.70 -0.71 20.77 16 41 H 0.25 15.28 8.31 -92.70 -0.77 14.51 16 42 H 0.14 1.83 3.32 -2.39 -0.01 1.82 16 43 H 0.11 1.26 8.02 -2.39 -0.02 1.24 16 44 H 0.14 2.39 8.05 -2.91 -0.02 2.36 16 45 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 46 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 47 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 48 H 0.14 2.53 5.13 -2.91 -0.01 2.51 16 Total: -1.00 -77.89 388.37 3.91 -73.98 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: 0.29 Total: 36.70 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 7.42 Total: -7.49 kcal Atomic # 7 Polarization: -126.77 SS G_CDS: -5.77 Total: -132.54 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.06 Total: -19.77 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -77.89 3.91 -73.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506966509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.469 kcal (2) G-P(sol) polarization free energy of solvation -77.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.67 seconds