Wall clock time and date at job start Wed Apr 1 2020 02:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47435 * 2 1 4 4 C 1.42900 * 114.00242 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47177 * 179.97438 * 4 3 2 6 6 N 1.30289 * 126.34552 * 89.96955 * 5 4 3 7 7 N 1.28533 * 110.05286 * 180.02562 * 6 5 4 8 8 C 1.31212 * 109.85842 * 0.02562 * 7 6 5 9 9 N 1.38587 * 126.46946 * 179.97438 * 8 7 6 10 10 C 1.46907 * 110.99698 * 249.24570 * 9 8 7 11 11 C 1.46894 * 111.00248 * 13.20004 * 9 8 7 12 12 H 1.09004 * 109.46899 * 55.00456 * 11 9 8 13 13 C 1.53001 * 109.47555 * 295.00265 * 11 9 8 14 14 C 1.50698 * 109.47086 * 174.99905 * 11 9 8 15 15 H 1.07995 * 120.00410 * 0.02562 * 14 11 9 16 16 C 1.37879 * 119.99742 * 180.02562 * 14 11 9 17 17 N 1.31512 * 120.00081 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99865 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.47044 * 89.99652 * 18 16 14 20 20 H 1.48502 * 109.47238 * 209.99740 * 18 16 14 21 21 H 1.48496 * 109.47038 * 329.99733 * 18 16 14 22 22 N 1.36450 * 107.05649 * 0.02562 * 8 7 6 23 23 C 1.46502 * 127.13822 * 179.97438 * 22 8 7 24 24 C 1.53000 * 109.47137 * 84.31107 * 23 22 8 25 25 H 1.09005 * 109.46867 * 303.83897 * 24 23 22 26 26 C 1.52994 * 109.47531 * 183.83816 * 24 23 22 27 27 S 1.81399 * 109.47185 * 63.83390 * 24 23 22 28 28 C 1.81404 * 102.99995 * 185.00106 * 27 24 23 29 29 H 1.08998 * 109.47306 * 300.00539 * 1 2 3 30 30 H 1.09004 * 109.46833 * 59.99878 * 1 2 3 31 31 H 1.08993 * 109.47067 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47320 * 240.00015 * 2 1 3 33 33 H 1.08998 * 109.47502 * 120.00081 * 2 1 3 34 34 H 1.09006 * 109.46955 * 60.00266 * 4 3 2 35 35 H 1.09000 * 109.46957 * 299.99977 * 4 3 2 36 36 H 1.09000 * 109.46834 * 63.06197 * 10 9 8 37 37 H 1.08999 * 109.46887 * 183.05825 * 10 9 8 38 38 H 1.08992 * 109.47490 * 303.06199 * 10 9 8 39 39 H 1.08997 * 109.46819 * 299.99928 * 13 11 9 40 40 H 1.08998 * 109.46789 * 59.99554 * 13 11 9 41 41 H 1.08994 * 109.47302 * 179.97438 * 13 11 9 42 42 H 0.97007 * 120.00195 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.47110 * 204.30974 * 23 22 8 44 44 H 1.09002 * 109.47122 * 324.31247 * 23 22 8 45 45 H 1.09008 * 109.46909 * 300.00405 * 26 24 23 46 46 H 1.08999 * 109.47320 * 59.99476 * 26 24 23 47 47 H 1.09000 * 109.47560 * 179.97438 * 26 24 23 48 48 H 1.08999 * 109.47289 * 60.00400 * 28 27 24 49 49 H 1.09003 * 109.47038 * 180.02562 * 28 27 24 50 50 H 1.09000 * 109.46864 * 300.00125 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8195 2.9161 -0.0001 6 7 4.0176 3.6630 1.0490 7 7 4.3356 4.8548 0.6878 8 6 4.3570 4.9329 -0.6218 9 7 4.6565 6.0569 -1.3752 10 6 3.4632 6.5584 -2.0699 11 6 5.2591 7.1049 -0.5406 12 1 6.1298 6.7016 -0.0234 13 6 4.2350 7.5903 0.4871 14 6 5.6825 8.2593 -1.4118 15 1 5.5199 8.2188 -2.4787 16 6 6.2776 9.3673 -0.8468 17 7 6.4753 9.4169 0.4525 18 14 6.8019 10.7987 -1.9266 19 1 5.6821 11.7672 -2.0427 20 1 7.9779 11.4721 -1.3194 21 1 7.1623 10.2946 -3.2761 22 7 4.0276 3.6989 -1.1018 23 6 3.9200 3.2959 -2.5062 24 6 5.3047 2.9178 -3.0358 25 1 5.9895 3.7535 -2.8916 26 6 5.2082 2.5890 -4.5269 27 16 5.9214 1.4686 -2.1357 28 6 7.6040 1.2711 -2.7842 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8341 0.9764 -0.8892 35 1 3.8333 0.9767 0.8908 36 1 2.7209 6.8726 -1.3361 37 1 3.7372 7.4075 -2.6960 38 1 3.0460 5.7672 -2.6928 39 1 3.3644 7.9936 -0.0301 40 1 3.9287 6.7553 1.1172 41 1 4.6823 8.3676 1.1066 42 1 6.8943 10.1963 0.8500 43 1 3.2530 2.4376 -2.5878 44 1 3.5204 4.1236 -3.0921 45 1 4.5233 1.7533 -4.6711 46 1 4.8376 3.4598 -5.0677 47 1 6.1948 2.3201 -4.9043 48 1 8.1820 2.1712 -2.5751 49 1 8.0794 0.4145 -2.3063 50 1 7.5615 1.1086 -3.8612 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001516451578.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:41 Heat of formation + Delta-G solvation = 53.456768 kcal Electronic energy + Delta-G solvation = -29543.462440 eV Core-core repulsion = 25734.719290 eV Total energy + Delta-G solvation = -3808.743150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.183 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.48125 -38.13487 -37.24104 -36.18312 -32.93660 -32.70903 -31.82521 -29.90988 -29.07950 -28.66495 -27.13858 -26.28043 -25.17441 -24.79617 -22.95002 -22.50048 -21.67125 -20.41964 -19.47959 -17.08794 -16.90301 -16.58705 -16.24784 -16.05533 -15.62865 -15.47652 -15.01650 -14.80875 -14.58083 -14.24569 -13.78729 -13.72636 -13.52337 -13.24679 -13.08174 -12.87611 -12.77850 -12.54529 -12.44806 -12.30068 -11.83051 -11.74412 -11.59322 -11.48390 -11.37054 -11.29166 -11.10856 -10.93017 -10.72683 -10.38852 -10.18018 -10.09584 -10.03854 -9.76382 -9.75240 -9.57338 -8.89707 -8.76635 -8.39743 -7.82494 -7.41838 -6.02523 -4.10095 1.45486 2.11962 2.36056 2.61625 3.27674 3.28722 3.35066 3.37062 3.86048 4.31152 4.38750 4.53245 4.64046 4.65739 4.80047 4.85080 4.96216 5.00405 5.01155 5.07530 5.09738 5.18516 5.20294 5.28887 5.31476 5.34880 5.50696 5.54247 5.62250 5.68532 5.70912 5.82389 5.91456 5.92735 6.09494 6.22496 6.36546 6.49541 6.84768 6.97850 7.05992 7.18172 7.35281 7.52734 7.69281 7.75386 7.98641 8.32847 8.48423 8.91559 9.39394 9.54419 11.03561 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.012044 B = 0.003642 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.298163 B = 7686.984888 C = 8954.908514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.385 6.385 4 C 0.161 3.839 5 C 0.164 3.836 6 N -0.270 5.270 7 N -0.310 5.310 8 C 0.388 3.612 9 N -0.456 5.456 10 C 0.035 3.965 11 C 0.230 3.770 12 H 0.049 0.951 13 C -0.179 4.179 14 C -0.514 4.514 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.883 5.883 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 N -0.475 5.475 23 C 0.134 3.866 24 C -0.075 4.075 25 H 0.107 0.893 26 C -0.142 4.142 27 S -0.257 6.257 28 C -0.121 4.121 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.094 0.906 38 H 0.043 0.957 39 H 0.020 0.980 40 H 0.052 0.948 41 H 0.088 0.912 42 H 0.262 0.738 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.079 0.921 49 H 0.099 0.901 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.090 -20.009 -9.527 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.304 6.304 4 C 0.082 3.918 5 C -0.103 4.103 6 N -0.111 5.111 7 N -0.154 5.154 8 C 0.032 3.968 9 N -0.181 5.181 10 C -0.112 4.112 11 C 0.126 3.874 12 H 0.067 0.933 13 C -0.238 4.238 14 C -0.553 4.553 15 H 0.081 0.919 16 C -0.139 4.139 17 N -0.521 5.521 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 N -0.172 5.172 23 C 0.009 3.991 24 C -0.204 4.204 25 H 0.125 0.875 26 C -0.202 4.202 27 S -0.031 6.031 28 C -0.290 4.290 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.112 0.888 38 H 0.061 0.939 39 H 0.039 0.961 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.072 0.928 43 H 0.115 0.885 44 H 0.128 0.872 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.082 0.918 48 H 0.098 0.902 49 H 0.118 0.882 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.175 -20.049 -7.538 22.292 hybrid contribution 0.716 1.230 -2.333 2.733 sum -5.459 -18.820 -9.871 21.941 Atomic orbital electron populations 1.21736 0.93690 1.02094 1.03280 1.22466 0.95609 0.83544 1.00261 1.87976 1.20296 1.26624 1.95493 1.20415 0.81604 0.87385 1.02369 1.23710 1.07894 0.95784 0.82901 1.73955 1.14581 0.98372 1.24201 1.74906 1.22424 1.10703 1.07381 1.23208 0.97632 0.86442 0.89470 1.59396 1.25106 1.04925 1.28633 1.22380 0.90593 1.00044 0.98189 1.19342 0.92763 0.85808 0.89456 0.93331 1.22539 0.98220 1.02380 1.00693 1.21020 1.40107 1.00435 0.93708 0.91918 1.24890 0.95672 0.98293 0.95016 1.69927 1.42716 1.29715 1.09735 0.86507 0.78175 0.82303 0.80431 1.20694 1.21205 1.19934 1.46070 1.54618 1.09211 1.07254 1.21634 0.95584 1.02401 0.79452 1.23626 1.00225 0.98725 0.97862 0.87472 1.21997 1.03016 1.02688 0.92471 1.86664 1.16973 1.39485 1.60018 1.23412 0.95846 1.05927 1.03783 0.91697 0.91957 0.91111 0.93318 0.93057 0.90996 0.90025 0.94293 0.88792 0.93852 0.96064 0.92958 0.89361 0.92780 0.88465 0.87210 0.91251 0.90959 0.91824 0.90244 0.88228 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.84 16 2 C 0.06 0.54 6.66 37.16 0.25 0.79 16 3 O -0.39 -5.24 10.33 -35.23 -0.36 -5.60 16 4 C 0.16 2.20 5.86 36.01 0.21 2.41 16 5 C 0.16 2.93 7.07 -154.02 -1.09 1.84 16 6 N -0.27 -5.87 12.18 32.99 0.40 -5.47 16 7 N -0.31 -7.32 8.98 30.31 0.27 -7.05 16 8 C 0.39 8.17 6.69 -318.88 -2.13 6.03 16 9 N -0.46 -9.80 4.77 -176.08 -0.84 -10.65 16 10 C 0.04 0.65 8.73 60.07 0.52 1.18 16 11 C 0.23 5.92 2.07 -68.87 -0.14 5.77 16 12 H 0.05 1.43 8.11 -51.93 -0.42 1.01 16 13 C -0.18 -4.63 8.27 37.16 0.31 -4.32 16 14 C -0.51 -13.68 7.93 -34.44 -0.27 -13.95 16 15 H 0.06 1.61 6.75 -52.49 -0.35 1.26 16 16 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 17 N -0.88 -25.30 11.32 55.43 0.63 -24.68 16 18 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 22 N -0.47 -8.11 2.60 -114.08 -0.30 -8.41 16 23 C 0.13 1.68 5.27 -4.04 -0.02 1.66 16 24 C -0.07 -0.86 3.05 -26.73 -0.08 -0.95 16 25 H 0.11 1.54 8.14 -51.92 -0.42 1.12 16 26 C -0.14 -1.17 9.10 37.15 0.34 -0.83 16 27 S -0.26 -3.00 18.57 -107.50 -2.00 -5.00 16 28 C -0.12 -1.12 10.45 101.05 1.06 -0.06 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.86 5.50 -51.93 -0.29 0.58 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.04 0.76 6.33 -51.93 -0.33 0.43 16 37 H 0.09 1.76 6.50 -51.93 -0.34 1.42 16 38 H 0.04 0.65 5.72 -51.93 -0.30 0.35 16 39 H 0.02 0.51 6.41 -51.93 -0.33 0.18 16 40 H 0.05 1.35 5.43 -51.93 -0.28 1.07 16 41 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.10 1.05 7.60 -51.93 -0.39 0.66 16 44 H 0.11 1.29 5.77 -51.93 -0.30 0.99 16 45 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.49 6.92 -51.93 -0.36 0.13 16 48 H 0.08 0.81 8.14 -51.92 -0.42 0.38 16 49 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 50 H 0.08 0.58 7.14 -51.92 -0.37 0.21 16 LS Contribution 398.47 15.07 6.00 6.00 Total: -1.00 -32.45 398.47 -10.14 -42.59 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.16 Total: 2.02 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -0.77 Total: 0.38 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.16 Total: -56.25 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.36 Total: -5.60 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -3.00 SS G_CDS: -2.00 Total: -5.00 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.45 -10.14 -42.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516451578.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.049 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds