Wall clock time and date at job start Wed Apr 1 2020 02:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47435 * 2 1 4 4 C 1.42900 * 114.00242 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47177 * 179.97438 * 4 3 2 6 6 N 1.30289 * 126.34552 * 89.96955 * 5 4 3 7 7 N 1.28533 * 110.05286 * 180.02562 * 6 5 4 8 8 C 1.31212 * 109.85842 * 0.02562 * 7 6 5 9 9 N 1.38587 * 126.46946 * 179.97438 * 8 7 6 10 10 C 1.46907 * 110.99698 * 249.24570 * 9 8 7 11 11 C 1.46894 * 111.00248 * 13.20004 * 9 8 7 12 12 H 1.09004 * 109.46899 * 55.00456 * 11 9 8 13 13 C 1.53001 * 109.47555 * 295.00265 * 11 9 8 14 14 C 1.50698 * 109.47086 * 174.99905 * 11 9 8 15 15 H 1.07995 * 120.00410 * 0.02562 * 14 11 9 16 16 C 1.37879 * 119.99742 * 180.02562 * 14 11 9 17 17 N 1.31512 * 120.00081 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99865 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.47044 * 89.99652 * 18 16 14 20 20 H 1.48502 * 109.47238 * 209.99740 * 18 16 14 21 21 H 1.48496 * 109.47038 * 329.99733 * 18 16 14 22 22 N 1.36450 * 107.05649 * 0.02562 * 8 7 6 23 23 C 1.46502 * 127.13822 * 179.97438 * 22 8 7 24 24 C 1.53000 * 109.47137 * 84.31107 * 23 22 8 25 25 H 1.09005 * 109.46867 * 303.83897 * 24 23 22 26 26 C 1.52994 * 109.47531 * 183.83816 * 24 23 22 27 27 S 1.81399 * 109.47185 * 63.83390 * 24 23 22 28 28 C 1.81404 * 102.99995 * 185.00106 * 27 24 23 29 29 H 1.08998 * 109.47306 * 300.00539 * 1 2 3 30 30 H 1.09004 * 109.46833 * 59.99878 * 1 2 3 31 31 H 1.08993 * 109.47067 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47320 * 240.00015 * 2 1 3 33 33 H 1.08998 * 109.47502 * 120.00081 * 2 1 3 34 34 H 1.09006 * 109.46955 * 60.00266 * 4 3 2 35 35 H 1.09000 * 109.46957 * 299.99977 * 4 3 2 36 36 H 1.09000 * 109.46834 * 63.06197 * 10 9 8 37 37 H 1.08999 * 109.46887 * 183.05825 * 10 9 8 38 38 H 1.08992 * 109.47490 * 303.06199 * 10 9 8 39 39 H 1.08997 * 109.46819 * 299.99928 * 13 11 9 40 40 H 1.08998 * 109.46789 * 59.99554 * 13 11 9 41 41 H 1.08994 * 109.47302 * 179.97438 * 13 11 9 42 42 H 0.97007 * 120.00195 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.47110 * 204.30974 * 23 22 8 44 44 H 1.09002 * 109.47122 * 324.31247 * 23 22 8 45 45 H 1.09008 * 109.46909 * 300.00405 * 26 24 23 46 46 H 1.08999 * 109.47320 * 59.99476 * 26 24 23 47 47 H 1.09000 * 109.47560 * 179.97438 * 26 24 23 48 48 H 1.08999 * 109.47289 * 60.00400 * 28 27 24 49 49 H 1.09003 * 109.47038 * 180.02562 * 28 27 24 50 50 H 1.09000 * 109.46864 * 300.00125 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8195 2.9161 -0.0001 6 7 4.0176 3.6630 1.0490 7 7 4.3356 4.8548 0.6878 8 6 4.3570 4.9329 -0.6218 9 7 4.6565 6.0569 -1.3752 10 6 3.4632 6.5584 -2.0699 11 6 5.2591 7.1049 -0.5406 12 1 6.1298 6.7016 -0.0234 13 6 4.2350 7.5903 0.4871 14 6 5.6825 8.2593 -1.4118 15 1 5.5199 8.2188 -2.4787 16 6 6.2776 9.3673 -0.8468 17 7 6.4753 9.4169 0.4525 18 14 6.8019 10.7987 -1.9266 19 1 5.6821 11.7672 -2.0427 20 1 7.9779 11.4721 -1.3194 21 1 7.1623 10.2946 -3.2761 22 7 4.0276 3.6989 -1.1018 23 6 3.9200 3.2959 -2.5062 24 6 5.3047 2.9178 -3.0358 25 1 5.9895 3.7535 -2.8916 26 6 5.2082 2.5890 -4.5269 27 16 5.9214 1.4686 -2.1357 28 6 7.6040 1.2711 -2.7842 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8341 0.9764 -0.8892 35 1 3.8333 0.9767 0.8908 36 1 2.7209 6.8726 -1.3361 37 1 3.7372 7.4075 -2.6960 38 1 3.0460 5.7672 -2.6928 39 1 3.3644 7.9936 -0.0301 40 1 3.9287 6.7553 1.1172 41 1 4.6823 8.3676 1.1066 42 1 6.8943 10.1963 0.8500 43 1 3.2530 2.4376 -2.5878 44 1 3.5204 4.1236 -3.0921 45 1 4.5233 1.7533 -4.6711 46 1 4.8376 3.4598 -5.0677 47 1 6.1948 2.3201 -4.9043 48 1 8.1820 2.1712 -2.5751 49 1 8.0794 0.4145 -2.3063 50 1 7.5615 1.1086 -3.8612 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001516451578.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:40 Heat of formation + Delta-G solvation = 35.065654 kcal Electronic energy + Delta-G solvation = -29544.259938 eV Core-core repulsion = 25734.719290 eV Total energy + Delta-G solvation = -3809.540649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.183 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.99868 -39.28227 -38.84255 -37.33411 -34.86205 -33.85847 -32.83792 -31.25844 -30.55717 -29.83927 -28.37427 -27.49736 -27.12928 -26.39357 -23.66650 -23.62387 -23.24680 -21.79587 -21.19554 -18.48335 -18.07495 -17.95430 -17.54899 -17.37915 -16.99297 -16.75899 -16.39187 -16.23763 -15.89917 -15.41944 -15.10345 -14.91322 -14.54796 -14.41275 -14.32418 -13.94876 -13.86651 -13.54269 -13.45199 -13.31901 -13.23413 -13.01772 -12.96608 -12.74258 -12.62369 -12.54932 -12.44121 -12.31467 -12.24434 -12.13333 -12.05731 -11.96922 -11.43860 -11.09524 -10.95157 -10.84852 -10.56062 -10.50775 -10.48425 -9.13575 -8.72143 -8.10993 -6.26465 0.57170 0.73565 1.25245 1.45436 1.45960 1.51708 1.56666 1.78483 2.41914 2.74846 2.99872 3.18614 3.39677 3.54573 3.59199 3.82488 3.95130 4.00898 4.12338 4.21633 4.24867 4.27105 4.31053 4.38138 4.41302 4.50076 4.53944 4.54717 4.67540 4.70242 4.80949 4.83613 4.87788 4.89641 4.98800 5.01029 5.06495 5.13781 5.20421 5.29263 5.29660 5.42828 5.60802 5.64676 5.83470 6.03373 6.14174 6.22927 6.59012 6.83200 7.42478 7.82900 8.95608 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.012044 B = 0.003642 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.298163 B = 7686.984888 C = 8954.908514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 O -0.408 6.408 4 C 0.168 3.832 5 C 0.185 3.815 6 N -0.317 5.317 7 N -0.358 5.358 8 C 0.374 3.626 9 N -0.453 5.453 10 C 0.037 3.963 11 C 0.244 3.756 12 H -0.002 1.002 13 C -0.162 4.162 14 C -0.522 4.522 15 H 0.074 0.926 16 C 0.011 3.989 17 N -0.920 5.920 18 Si 0.969 3.031 19 H -0.274 1.274 20 H -0.289 1.289 21 H -0.261 1.261 22 N -0.464 5.464 23 C 0.125 3.875 24 C -0.066 4.066 25 H 0.073 0.927 26 C -0.134 4.134 27 S -0.291 6.291 28 C -0.112 4.112 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.024 0.976 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.027 0.973 40 H 0.046 0.954 41 H 0.059 0.941 42 H 0.262 0.738 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.112 0.888 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.922 -21.948 -12.800 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 O -0.327 6.327 4 C 0.089 3.911 5 C -0.084 4.084 6 N -0.157 5.157 7 N -0.202 5.202 8 C 0.016 3.984 9 N -0.176 5.176 10 C -0.110 4.110 11 C 0.138 3.862 12 H 0.016 0.984 13 C -0.221 4.221 14 C -0.560 4.560 15 H 0.092 0.908 16 C -0.188 4.188 17 N -0.559 5.559 18 Si 0.794 3.206 19 H -0.199 1.199 20 H -0.215 1.215 21 H -0.185 1.185 22 N -0.159 5.159 23 C 0.002 3.998 24 C -0.195 4.195 25 H 0.092 0.908 26 C -0.193 4.193 27 S -0.065 6.065 28 C -0.280 4.280 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.042 0.958 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.089 0.911 48 H 0.084 0.916 49 H 0.131 0.869 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.030 -22.026 -10.845 25.537 hybrid contribution 0.948 1.648 -1.304 2.305 sum -6.082 -20.378 -12.148 24.491 Atomic orbital electron populations 1.21771 0.92832 1.03581 1.02451 1.22775 0.96284 0.81749 1.01805 1.87937 1.19613 1.29440 1.95744 1.20500 0.82342 0.84468 1.03776 1.24518 1.04740 0.96907 0.82204 1.73850 1.17167 0.98471 1.26194 1.74731 1.23925 1.12308 1.09282 1.23072 0.98625 0.87481 0.89190 1.59277 1.26533 1.04125 1.27701 1.22462 0.89131 1.01508 0.97892 1.18890 0.91201 0.86548 0.89527 0.98408 1.22333 0.98260 1.01149 1.00405 1.21316 1.39881 1.00621 0.94229 0.90823 1.25799 0.95628 1.01158 0.96203 1.70099 1.43570 1.30499 1.11713 0.85392 0.77620 0.78696 0.78903 1.19913 1.21468 1.18541 1.46214 1.53185 1.07519 1.08981 1.22084 0.97023 1.03807 0.76859 1.23549 0.98546 0.97369 1.00081 0.90814 1.21978 1.04057 1.03744 0.89558 1.86657 1.19191 1.39246 1.61436 1.23453 0.93577 1.05769 1.05191 0.93065 0.92247 0.88459 0.91115 0.92113 0.88747 0.89417 0.95774 0.88770 0.89831 0.95350 0.93509 0.92208 0.92902 0.85860 0.86064 0.89452 0.90059 0.91115 0.91633 0.86928 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 10.28 71.98 0.74 -1.35 16 2 C 0.05 0.80 6.66 71.98 0.48 1.28 16 3 O -0.41 -10.34 10.33 -148.98 -1.54 -11.88 16 4 C 0.17 4.33 5.86 71.24 0.42 4.75 16 5 C 0.19 6.58 7.07 137.64 0.97 7.55 16 6 N -0.32 -14.26 12.18 -49.54 -0.60 -14.86 16 7 N -0.36 -17.79 8.98 -58.00 -0.52 -18.31 16 8 C 0.37 16.12 6.69 260.11 1.74 17.86 16 9 N -0.45 -19.80 4.77 -711.01 -3.39 -23.20 16 10 C 0.04 1.33 8.73 127.69 1.11 2.45 16 11 C 0.24 13.08 2.07 44.17 0.09 13.17 16 12 H 0.00 -0.13 8.11 -2.38 -0.02 -0.15 16 13 C -0.16 -8.80 8.27 71.98 0.60 -8.21 16 14 C -0.52 -28.21 7.93 25.60 0.20 -28.00 16 15 H 0.07 3.74 6.75 -2.91 -0.02 3.72 16 16 C 0.01 0.63 5.30 84.66 0.45 1.08 16 17 N -0.92 -54.61 11.32 21.45 0.24 -54.37 16 18 Si 0.97 42.93 29.54 68.60 2.03 44.95 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 21 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 22 N -0.46 -15.60 2.60 -514.85 -1.34 -16.94 16 23 C 0.12 2.85 5.27 86.38 0.46 3.30 16 24 C -0.07 -1.40 3.05 30.59 0.09 -1.30 16 25 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 26 C -0.13 -1.76 9.10 71.98 0.66 -1.10 16 27 S -0.29 -6.25 18.57 -56.49 -1.05 -7.30 16 28 C -0.11 -1.85 10.45 113.37 1.19 -0.66 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 2.01 5.50 -2.38 -0.01 2.00 16 35 H 0.09 2.15 8.14 -2.39 -0.02 2.14 16 36 H 0.02 0.94 6.33 -2.39 -0.02 0.92 16 37 H 0.09 3.41 6.50 -2.39 -0.02 3.39 16 38 H 0.08 2.32 5.72 -2.39 -0.01 2.31 16 39 H 0.03 1.43 6.41 -2.39 -0.02 1.42 16 40 H 0.05 2.57 5.43 -2.39 -0.01 2.56 16 41 H 0.06 3.57 6.07 -2.39 -0.01 3.55 16 42 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 43 H 0.12 2.22 7.60 -2.39 -0.02 2.20 16 44 H 0.12 2.48 5.77 -2.39 -0.01 2.46 16 45 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 46 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.07 0.85 6.92 -2.39 -0.02 0.84 16 48 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.11 1.56 8.14 -2.39 -0.02 1.55 16 50 H 0.10 1.20 7.14 -2.39 -0.02 1.18 16 Total: -1.00 -75.05 398.47 3.95 -71.11 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.93 Total: 19.98 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 9.19 Total: 10.81 kcal Atomic # 7 Polarization: -122.06 SS G_CDS: -5.61 Total: -127.67 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -1.54 Total: -11.88 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: -6.25 SS G_CDS: -1.05 Total: -7.30 kcal Total: -75.05 3.95 -71.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516451578.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.173 kcal (2) G-P(sol) polarization free energy of solvation -75.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds