Wall clock time and date at job start Wed Apr 1 2020 02:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42907 * 109.47249 * 2 1 4 4 C 1.42901 * 113.99836 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.46938 * 180.02562 * 4 3 2 6 6 N 1.30289 * 126.34741 * 90.02616 * 5 4 3 7 7 N 1.28524 * 110.05409 * 180.02562 * 6 5 4 8 8 C 1.31218 * 109.86063 * 359.97438 * 7 6 5 9 9 N 1.38578 * 126.46986 * 179.97438 * 8 7 6 10 10 C 1.46896 * 111.00675 * 306.18726 * 9 8 7 11 11 C 1.46909 * 110.99988 * 70.14065 * 9 8 7 12 12 H 1.08997 * 109.46525 * 54.99438 * 11 9 8 13 13 C 1.52994 * 109.46786 * 294.99688 * 11 9 8 14 14 C 1.50696 * 109.47127 * 174.99676 * 11 9 8 15 15 H 1.07995 * 120.00345 * 359.97438 * 14 11 9 16 16 C 1.37879 * 120.00134 * 180.02562 * 14 11 9 17 17 N 1.31516 * 119.99623 * 359.97438 * 16 14 11 18 18 Si 1.86795 * 120.00305 * 180.02562 * 16 14 11 19 19 H 1.48493 * 109.47244 * 89.99824 * 18 16 14 20 20 H 1.48502 * 109.47133 * 209.99722 * 18 16 14 21 21 H 1.48500 * 109.47265 * 329.99526 * 18 16 14 22 22 N 1.36447 * 107.05081 * 359.73992 * 8 7 6 23 23 C 1.46503 * 127.13404 * 180.26303 * 22 8 7 24 24 C 1.52996 * 109.47143 * 276.68675 * 23 22 8 25 25 H 1.09003 * 109.47241 * 53.89181 * 24 23 22 26 26 C 1.53005 * 109.47289 * 173.88872 * 24 23 22 27 27 S 1.81400 * 109.47426 * 293.88875 * 24 23 22 28 28 C 1.81399 * 103.00238 * 174.99850 * 27 24 23 29 29 H 1.09002 * 109.47430 * 59.99227 * 1 2 3 30 30 H 1.09003 * 109.47469 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46979 * 299.99701 * 1 2 3 32 32 H 1.09004 * 109.46979 * 240.00299 * 2 1 3 33 33 H 1.09002 * 109.47430 * 120.00773 * 2 1 3 34 34 H 1.08999 * 109.47026 * 300.00481 * 4 3 2 35 35 H 1.08998 * 109.46813 * 60.00437 * 4 3 2 36 36 H 1.08993 * 109.47378 * 54.64709 * 10 9 8 37 37 H 1.09001 * 109.47649 * 174.65749 * 10 9 8 38 38 H 1.09012 * 109.46613 * 294.64647 * 10 9 8 39 39 H 1.09003 * 109.47060 * 299.99857 * 13 11 9 40 40 H 1.09000 * 109.47558 * 59.99548 * 13 11 9 41 41 H 1.09001 * 109.46883 * 179.97438 * 13 11 9 42 42 H 0.96997 * 120.00164 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.47316 * 36.68863 * 23 22 8 44 44 H 1.08999 * 109.47252 * 156.68891 * 23 22 8 45 45 H 1.09001 * 109.47036 * 180.02562 * 26 24 23 46 46 H 1.08995 * 109.46773 * 300.00184 * 26 24 23 47 47 H 1.08996 * 109.46797 * 60.00385 * 26 24 23 48 48 H 1.09000 * 109.47033 * 300.00429 * 28 27 24 49 49 H 1.08996 * 109.47078 * 60.00258 * 28 27 24 50 50 H 1.09001 * 109.47221 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9161 0.0001 6 7 4.0196 3.6615 1.0499 7 7 4.3368 4.8538 0.6898 8 6 4.3569 4.9335 -0.6198 9 7 4.6553 6.0585 -1.3720 10 6 3.8126 7.1949 -0.9769 11 6 6.0806 6.3987 -1.2676 12 1 6.6820 5.5340 -1.5481 13 6 6.4049 6.7999 0.1728 14 6 6.3917 7.5479 -2.1914 15 1 5.6091 7.9820 -2.7959 16 6 7.6758 8.0447 -2.2656 17 7 8.6289 7.5159 -1.5297 18 14 8.0613 9.4698 -3.4101 19 1 7.8729 10.7519 -2.6851 20 1 9.4681 9.3655 -3.8739 21 1 7.1494 9.4247 -4.5813 22 7 4.0335 3.6983 -1.1008 23 6 3.9327 3.2949 -2.5056 24 6 2.5533 3.6748 -3.0476 25 1 2.3725 4.7350 -2.8699 26 6 2.5006 3.3935 -4.5506 27 16 1.2811 2.6948 -2.2040 28 6 -0.2646 3.3836 -2.8573 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8340 0.9763 0.8891 35 1 3.8332 0.9767 -0.8908 36 1 3.9090 7.3633 0.0956 37 1 4.1310 8.0878 -1.5150 38 1 2.7722 6.9770 -1.2184 39 1 5.8034 7.6646 0.4532 40 1 6.1798 5.9687 0.8410 41 1 7.4625 7.0519 0.2503 42 1 9.5322 7.8656 -1.5816 43 1 4.7034 3.8024 -3.0856 44 1 4.0696 2.2164 -2.5846 45 1 1.5180 3.6646 -4.9368 46 1 3.2650 3.9824 -5.0574 47 1 2.6813 2.3334 -4.7283 48 1 -0.3219 4.4442 -2.6124 49 1 -0.2891 3.2589 -3.9398 50 1 -1.1117 2.8620 -2.4119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001516451589.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:53 Heat of formation + Delta-G solvation = 38.018564 kcal Electronic energy + Delta-G solvation = -29870.533949 eV Core-core repulsion = 26061.121348 eV Total energy + Delta-G solvation = -3809.412601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.183 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.97760 -39.16489 -38.69192 -37.23821 -34.86970 -33.77367 -32.78230 -31.28142 -30.45937 -29.73399 -28.03737 -27.46315 -27.04757 -26.73463 -23.62554 -23.54402 -22.98230 -21.87804 -21.11908 -18.42322 -18.12319 -17.87546 -17.44289 -17.36170 -16.93034 -16.61139 -16.37548 -16.14125 -15.71629 -15.31657 -14.97621 -14.78523 -14.55078 -14.28390 -14.19692 -13.86763 -13.79333 -13.46364 -13.29320 -13.23024 -13.14551 -13.07148 -12.89881 -12.72896 -12.60079 -12.52948 -12.44697 -12.31310 -12.18936 -12.08057 -12.06377 -12.00492 -11.53243 -11.09078 -10.90266 -10.79692 -10.52748 -10.15288 -10.04534 -9.46251 -8.38919 -8.13660 -6.27158 0.60263 0.87297 1.30163 1.45751 1.46879 1.57007 1.67911 1.80902 2.42169 2.86298 3.02551 3.16987 3.53888 3.55574 3.68381 3.82176 4.03696 4.15320 4.26179 4.29406 4.31261 4.33191 4.38292 4.46703 4.50591 4.51093 4.64343 4.65965 4.71561 4.72441 4.84664 4.88047 4.94097 4.95096 4.99928 5.04286 5.10291 5.13013 5.16472 5.21885 5.36930 5.40224 5.62151 5.63538 5.81982 5.99670 6.20542 6.31974 6.62507 6.82362 7.41873 7.75727 8.93229 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.003532 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.811825 B = 7925.618087 C = 8852.910841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 O -0.370 6.370 4 C 0.161 3.839 5 C 0.189 3.811 6 N -0.316 5.316 7 N -0.346 5.346 8 C 0.363 3.637 9 N -0.462 5.462 10 C 0.053 3.947 11 C 0.237 3.763 12 H 0.001 0.999 13 C -0.155 4.155 14 C -0.516 4.516 15 H 0.071 0.929 16 C 0.015 3.985 17 N -0.921 5.921 18 Si 0.967 3.033 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.262 1.262 22 N -0.453 5.453 23 C 0.132 3.868 24 C -0.081 4.081 25 H 0.070 0.930 26 C -0.134 4.134 27 S -0.211 6.211 28 C -0.133 4.133 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.026 0.974 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.030 0.970 40 H 0.028 0.972 41 H 0.061 0.939 42 H 0.262 0.738 43 H 0.104 0.896 44 H 0.122 0.878 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.062 0.938 49 H 0.088 0.912 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.686 -16.041 -6.295 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 O -0.288 6.288 4 C 0.082 3.918 5 C -0.080 4.080 6 N -0.158 5.158 7 N -0.190 5.190 8 C 0.005 3.995 9 N -0.187 5.187 10 C -0.094 4.094 11 C 0.131 3.869 12 H 0.019 0.981 13 C -0.215 4.215 14 C -0.554 4.554 15 H 0.089 0.911 16 C -0.185 4.185 17 N -0.560 5.560 18 Si 0.792 3.208 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.186 1.186 22 N -0.146 5.146 23 C 0.009 3.991 24 C -0.211 4.211 25 H 0.088 0.912 26 C -0.193 4.193 27 S 0.015 5.985 28 C -0.301 4.301 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.044 0.956 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.122 0.878 44 H 0.140 0.860 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.102 0.898 48 H 0.081 0.919 49 H 0.107 0.893 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.517 -16.398 -4.609 23.727 hybrid contribution 0.751 1.725 -1.509 2.411 sum -15.767 -14.673 -6.118 22.390 Atomic orbital electron populations 1.21685 0.93377 1.02830 1.02079 1.22632 0.95982 0.82632 1.01014 1.88149 1.17989 1.27765 1.94898 1.20441 0.84113 0.83803 1.03474 1.24773 1.03834 0.97294 0.82075 1.73844 1.17662 0.98344 1.25939 1.74621 1.21180 1.13109 1.10043 1.22793 1.00600 0.87764 0.88301 1.59318 1.08401 1.01446 1.49571 1.22190 0.95274 0.92808 0.99166 1.19049 0.79785 0.95024 0.93082 0.98106 1.22235 1.02339 0.98717 0.98159 1.21238 0.94991 1.15843 1.23352 0.91056 1.25734 0.95939 0.99527 0.97266 1.70053 1.01972 1.42960 1.40981 0.85421 0.77281 0.78991 0.79128 1.20317 1.21245 1.18597 1.46375 1.50567 1.08571 1.09092 1.21855 0.97425 1.03020 0.76788 1.23516 0.95569 1.01868 1.00141 0.91155 1.21951 1.03326 1.03773 0.90239 1.87829 1.00871 1.49944 1.59881 1.23497 0.98271 1.03661 1.04707 0.92631 0.89224 0.93239 0.91864 0.92588 0.89087 0.89409 0.95573 0.89343 0.91771 0.95042 0.95322 0.92036 0.92836 0.87773 0.86004 0.91099 0.91262 0.89770 0.91853 0.89290 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 10.28 71.98 0.74 -1.28 16 2 C 0.05 0.83 6.66 71.98 0.48 1.31 16 3 O -0.37 -8.56 7.11 -148.98 -1.06 -9.62 16 4 C 0.16 3.79 5.99 71.24 0.43 4.22 16 5 C 0.19 6.45 7.18 137.64 0.99 7.44 16 6 N -0.32 -13.48 12.18 -49.54 -0.60 -14.08 16 7 N -0.35 -16.13 9.71 -58.01 -0.56 -16.69 16 8 C 0.36 15.46 6.21 260.12 1.62 17.08 16 9 N -0.46 -20.27 4.77 -711.01 -3.39 -23.66 16 10 C 0.05 2.15 8.66 127.69 1.11 3.26 16 11 C 0.24 12.18 2.32 44.16 0.10 12.28 16 12 H 0.00 0.06 8.11 -2.39 -0.02 0.04 16 13 C -0.16 -8.25 8.20 71.98 0.59 -7.66 16 14 C -0.52 -27.20 7.81 25.60 0.20 -27.00 16 15 H 0.07 3.62 6.81 -2.91 -0.02 3.60 16 16 C 0.01 0.78 5.30 84.65 0.45 1.23 16 17 N -0.92 -52.61 11.32 21.45 0.24 -52.37 16 18 Si 0.97 42.14 29.54 68.60 2.03 44.16 16 19 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 22 N -0.45 -15.65 2.63 -514.87 -1.35 -17.01 16 23 C 0.13 3.43 5.46 86.38 0.47 3.90 16 24 C -0.08 -1.86 3.03 30.59 0.09 -1.76 16 25 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 26 C -0.13 -2.18 9.10 71.98 0.66 -1.53 16 27 S -0.21 -4.56 17.63 -56.49 -1.00 -5.56 16 28 C -0.13 -2.22 10.45 113.37 1.19 -1.04 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.09 1.57 7.16 -2.39 -0.02 1.55 16 36 H 0.03 1.12 6.55 -2.39 -0.02 1.11 16 37 H 0.09 3.59 6.29 -2.39 -0.02 3.57 16 38 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 39 H 0.03 1.61 6.60 -2.39 -0.02 1.59 16 40 H 0.03 1.52 5.93 -2.39 -0.01 1.50 16 41 H 0.06 3.56 6.07 -2.39 -0.01 3.54 16 42 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 43 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 44 H 0.12 2.42 7.07 -2.39 -0.02 2.40 16 45 H 0.07 1.02 6.92 -2.39 -0.02 1.00 16 46 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.09 1.18 7.14 -2.39 -0.02 1.16 16 50 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -69.15 401.68 4.32 -64.83 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.92 Total: 19.54 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 9.10 Total: 10.45 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -5.67 Total: -123.81 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -1.06 Total: -9.62 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: -4.56 SS G_CDS: -1.00 Total: -5.56 kcal Total: -69.15 4.32 -64.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516451589.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.847 kcal (2) G-P(sol) polarization free energy of solvation -69.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds