Wall clock time and date at job start Wed Apr 1 2020 04:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36115 * 126.31270 * 2 1 4 4 N 1.30089 * 110.04229 * 179.97438 * 3 2 1 5 5 C 1.35855 * 109.53519 * 359.97438 * 4 3 2 6 6 C 1.39722 * 133.50988 * 179.97438 * 5 4 3 7 7 C 1.37838 * 120.10986 * 179.97438 * 6 5 4 8 8 C 1.38335 * 120.72584 * 359.79924 * 7 6 5 9 9 C 1.39399 * 120.27802 * 0.46192 * 8 7 6 10 10 C 1.47531 * 120.24556 * 179.77713 * 9 8 7 11 11 O 1.21590 * 120.00285 * 124.99252 * 10 9 8 12 12 N 1.34780 * 120.00128 * 304.99504 * 10 9 8 13 13 C 1.46925 * 120.62672 * 354.49505 * 12 10 9 14 14 C 1.53194 * 108.77239 * 126.37162 * 13 12 10 15 15 C 1.53037 * 109.31726 * 54.63077 * 14 13 12 16 16 C 1.53040 * 109.53957 * 298.63722 * 15 14 13 17 17 H 1.09003 * 109.52046 * 301.39674 * 16 15 14 18 18 C 1.52992 * 109.49859 * 181.31514 * 16 15 14 19 19 N 1.46501 * 109.47310 * 175.16172 * 18 16 15 20 20 C 1.36940 * 120.00102 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99801 * 359.97438 * 20 19 18 22 22 C 1.38808 * 119.99448 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00492 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 119.99468 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47137 * 269.99488 * 24 22 20 26 26 H 1.48499 * 109.46913 * 29.99917 * 24 22 20 27 27 H 1.48503 * 109.46683 * 149.99581 * 24 22 20 28 28 C 1.46927 * 120.63086 * 174.47145 * 12 10 9 29 29 C 1.37510 * 126.30699 * 179.97438 * 2 1 3 30 30 H 1.08993 * 109.47671 * 274.79067 * 1 2 3 31 31 H 1.09009 * 109.46562 * 34.79357 * 1 2 3 32 32 H 1.08998 * 109.47236 * 154.78613 * 1 2 3 33 33 H 1.08003 * 124.97605 * 359.97438 * 3 2 1 34 34 H 1.08004 * 119.94069 * 0.02562 * 6 5 4 35 35 H 1.07999 * 119.63899 * 180.02562 * 7 6 5 36 36 H 1.07994 * 119.85933 * 180.26546 * 8 7 6 37 37 H 1.08998 * 109.58845 * 246.15302 * 13 12 10 38 38 H 1.08997 * 109.59182 * 6.44128 * 13 12 10 39 39 H 1.09007 * 109.49757 * 174.58602 * 14 13 12 40 40 H 1.08999 * 109.49871 * 294.64294 * 14 13 12 41 41 H 1.08996 * 109.46434 * 178.60877 * 15 14 13 42 42 H 1.09003 * 109.45593 * 58.65350 * 15 14 13 43 43 H 1.09003 * 109.47481 * 55.15960 * 18 16 15 44 44 H 1.09003 * 109.47370 * 295.16126 * 18 16 15 45 45 H 0.96996 * 119.99456 * 359.97438 * 19 18 16 46 46 H 0.96994 * 119.99827 * 0.02562 * 23 22 20 47 47 H 1.09001 * 109.58559 * 113.84201 * 28 12 10 48 48 H 1.08997 * 109.58395 * 353.41495 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2711 1.0968 0.0000 4 7 3.5199 0.7323 0.0005 5 6 3.5973 -0.6240 0.0015 6 6 4.6637 -1.5267 0.0019 7 6 4.4212 -2.8836 0.0035 8 6 3.1262 -3.3701 0.0088 9 6 2.0449 -2.4903 0.0030 10 6 0.6641 -3.0100 0.0037 11 8 -0.1188 -2.6547 0.8635 12 7 0.2705 -3.8786 -0.9487 13 6 1.1647 -4.2248 -2.0618 14 6 1.2996 -5.7493 -2.1301 15 6 -0.0929 -6.3770 -2.2239 16 6 -0.9010 -6.0191 -0.9745 17 1 -0.3785 -6.3779 -0.0877 18 6 -2.2813 -6.6741 -1.0541 19 7 -3.0114 -6.4275 0.1919 20 6 -4.2788 -6.9210 0.3519 21 1 -4.7402 -7.4915 -0.4405 22 6 -4.9707 -6.6868 1.5323 23 7 -4.4085 -5.9910 2.4978 24 14 -6.6998 -7.3593 1.7504 25 1 -7.6847 -6.3591 1.2658 26 1 -6.8446 -8.6148 0.9706 27 1 -6.9445 -7.6386 3.1882 28 6 -1.0609 -4.4977 -0.8932 29 6 2.2792 -1.1081 0.0005 30 1 -0.3634 0.0858 1.0240 31 1 -0.3633 0.8440 -0.5865 32 1 -0.3633 -0.9297 -0.4378 33 1 1.9246 2.1198 -0.0004 34 1 5.6798 -1.1606 0.0019 35 1 5.2512 -3.5745 0.0042 36 1 2.9523 -4.4359 0.0143 37 1 0.7454 -3.8530 -2.9967 38 1 2.1443 -3.7762 -1.8968 39 1 1.8826 -6.0240 -3.0093 40 1 1.8024 -6.1106 -1.2330 41 1 0.0013 -7.4604 -2.2975 42 1 -0.6039 -5.9963 -3.1083 43 1 -2.1660 -7.7480 -1.2012 44 1 -2.8369 -6.2504 -1.8907 45 1 -2.5971 -5.9147 0.9033 46 1 -3.5109 -5.6415 2.3844 47 1 -1.6617 -4.1480 -1.7327 48 1 -1.5489 -4.2312 0.0443 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566897169.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:53 Heat of formation + Delta-G solvation = 33.263529 kcal Electronic energy + Delta-G solvation = -30368.332576 eV Core-core repulsion = 26423.269830 eV Total energy + Delta-G solvation = -3945.062746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -43.33110 -41.40533 -39.03853 -38.24630 -36.89899 -35.24053 -34.62135 -33.13836 -32.04199 -31.18298 -30.46830 -28.17549 -27.07731 -26.77073 -25.02744 -24.60080 -23.30918 -22.97179 -22.64900 -21.23958 -20.07017 -19.37743 -18.69804 -18.20840 -17.79493 -17.23494 -16.89167 -16.70183 -16.54578 -16.20464 -15.97201 -15.76613 -15.40919 -15.13332 -14.94131 -14.71118 -14.48960 -14.29681 -14.22308 -14.09626 -13.91076 -13.48601 -13.16361 -12.98758 -12.85822 -12.74810 -12.63103 -12.49843 -12.15105 -11.93899 -11.91983 -11.78281 -11.61398 -11.50250 -11.41237 -11.19626 -10.98476 -10.82643 -9.81756 -9.47919 -9.17574 -9.15132 -8.43829 -5.37996 -0.39107 0.39080 1.32397 1.54849 1.59714 1.66660 1.70690 1.80664 1.85522 2.68908 2.71730 3.15888 3.35001 3.36867 3.56194 3.63634 3.73511 3.77453 3.78881 3.94457 3.98865 4.04090 4.19555 4.21372 4.25940 4.29541 4.34305 4.39556 4.50155 4.56811 4.63571 4.68744 4.71363 4.79029 4.81852 4.92183 4.99682 5.05811 5.13047 5.21991 5.24016 5.33044 5.38606 5.41215 5.42590 5.54860 5.73732 6.05027 6.22794 6.42752 6.73370 6.91815 7.04296 7.94474 8.06911 9.07264 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.014857 B = 0.002901 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.154598 B = 9647.955052 C =10833.979244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.494 5.494 3 C 0.268 3.732 4 N -0.522 5.522 5 C 0.019 3.981 6 C -0.046 4.046 7 C -0.120 4.120 8 C -0.063 4.063 9 C -0.137 4.137 10 C 0.552 3.448 11 O -0.579 6.579 12 N -0.597 5.597 13 C 0.095 3.905 14 C -0.124 4.124 15 C -0.106 4.106 16 C -0.094 4.094 17 H 0.055 0.945 18 C 0.164 3.836 19 N -0.760 5.760 20 C -0.335 4.335 21 H 0.070 0.930 22 C -0.108 4.108 23 N -0.975 5.975 24 Si 1.133 2.867 25 H -0.284 1.284 26 H -0.269 1.269 27 H -0.294 1.294 28 C 0.130 3.870 29 C 0.057 3.943 30 H 0.069 0.931 31 H 0.123 0.877 32 H 0.061 0.939 33 H 0.258 0.742 34 H 0.155 0.845 35 H 0.177 0.823 36 H 0.150 0.850 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.027 0.973 44 H 0.025 0.975 45 H 0.357 0.643 46 H 0.240 0.760 47 H 0.070 0.930 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.941 9.215 -14.162 26.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.183 5.183 3 C -0.017 4.017 4 N -0.241 5.241 5 C -0.099 4.099 6 C -0.066 4.066 7 C -0.140 4.140 8 C -0.083 4.083 9 C -0.143 4.143 10 C 0.342 3.658 11 O -0.460 6.460 12 N -0.328 5.328 13 C -0.026 4.026 14 C -0.162 4.162 15 C -0.144 4.144 16 C -0.114 4.114 17 H 0.073 0.927 18 C 0.037 3.963 19 N -0.404 5.404 20 C -0.466 4.466 21 H 0.088 0.912 22 C -0.299 4.299 23 N -0.623 5.623 24 Si 0.957 3.043 25 H -0.211 1.211 26 H -0.194 1.194 27 H -0.220 1.220 28 C 0.008 3.992 29 C -0.054 4.054 30 H 0.088 0.912 31 H 0.141 0.859 32 H 0.080 0.920 33 H 0.274 0.726 34 H 0.173 0.827 35 H 0.194 0.806 36 H 0.168 0.832 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.132 0.868 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.045 0.955 44 H 0.043 0.957 45 H 0.189 0.811 46 H 0.050 0.950 47 H 0.088 0.912 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 19.692 9.686 -12.927 25.470 hybrid contribution 0.011 -0.088 -0.212 0.230 sum 19.704 9.598 -13.139 25.554 Atomic orbital electron populations 1.22142 0.74801 1.04818 1.04049 1.45450 1.08225 1.05521 1.59107 1.26272 0.84389 0.94641 0.96381 1.70521 1.19452 1.10511 1.23656 1.19467 0.92123 0.90936 1.07380 1.20825 0.97957 0.91701 0.96085 1.21211 0.96806 0.94836 1.01145 1.21365 0.91258 0.99466 0.96195 1.18723 0.93097 0.90482 1.11989 1.18767 0.87692 0.78572 0.80798 1.90825 1.55865 1.60104 1.39212 1.48192 1.16497 1.42766 1.25321 1.22224 0.94771 0.97249 0.88359 1.21916 0.96758 0.93159 1.04391 1.21512 0.95483 1.01834 0.95576 1.21562 0.95950 0.93605 1.00271 0.92686 1.20773 0.90624 0.97102 0.87779 1.42695 1.15696 1.65653 1.16381 1.20441 0.93298 1.30252 1.02615 0.91184 1.27341 1.09321 1.00672 0.92575 1.70965 1.15891 1.40251 1.35200 0.82577 0.70261 0.75833 0.75639 1.21066 1.19391 1.22024 1.21399 0.83297 0.92828 1.01721 1.18897 0.92277 0.88572 1.05691 0.91190 0.85888 0.92044 0.72633 0.82720 0.80602 0.83231 0.90075 0.87765 0.86814 0.91385 0.90281 0.90569 0.95537 0.95747 0.81132 0.94991 0.91173 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.85 9.97 127.77 1.27 3.13 16 2 N -0.49 -11.78 3.19 -542.86 -1.73 -13.51 16 3 C 0.27 5.16 12.50 180.04 2.25 7.41 16 4 N -0.52 -12.66 11.28 -192.02 -2.17 -14.83 16 5 C 0.02 0.46 7.22 39.41 0.28 0.75 16 6 C -0.05 -0.84 10.09 22.53 0.23 -0.61 16 7 C -0.12 -1.73 9.99 22.20 0.22 -1.50 16 8 C -0.06 -1.20 7.55 22.57 0.17 -1.03 16 9 C -0.14 -3.62 4.73 -20.07 -0.09 -3.71 16 10 C 0.55 17.83 5.71 86.69 0.50 18.32 16 11 O -0.58 -24.21 14.33 -4.00 -0.06 -24.27 16 12 N -0.60 -16.52 2.97 -822.67 -2.45 -18.97 16 13 C 0.09 1.69 5.90 86.36 0.51 2.20 16 14 C -0.12 -1.86 6.08 30.67 0.19 -1.67 16 15 C -0.11 -2.19 5.17 30.62 0.16 -2.04 16 16 C -0.09 -2.98 2.38 -10.72 -0.03 -3.00 16 17 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 18 C 0.16 6.59 5.65 86.38 0.49 7.08 16 19 N -0.76 -40.32 5.37 -343.46 -1.85 -42.16 16 20 C -0.33 -19.57 9.99 84.03 0.84 -18.73 16 21 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 22 C -0.11 -6.56 5.50 84.86 0.47 -6.09 16 23 N -0.97 -64.49 13.70 21.65 0.30 -64.19 16 24 Si 1.13 53.64 29.92 68.60 2.05 55.69 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 27 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 28 C 0.13 4.41 5.50 86.36 0.48 4.88 16 29 C 0.06 1.55 6.79 39.26 0.27 1.81 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 31 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.06 1.73 5.49 -2.39 -0.01 1.72 16 33 H 0.26 2.14 8.06 -2.91 -0.02 2.11 16 34 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 36 H 0.15 2.35 7.74 -2.91 -0.02 2.32 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.10 1.60 4.88 -2.39 -0.01 1.59 16 39 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.07 1.06 8.08 -2.39 -0.02 1.04 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.36 20.29 5.72 -92.71 -0.53 19.76 16 46 H 0.24 16.15 6.77 -92.71 -0.63 15.53 16 47 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.05 2.22 6.24 -2.39 -0.01 2.21 16 Total: -1.00 -86.22 381.16 2.89 -83.34 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: 0.59 Total: 31.72 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 8.19 Total: 7.19 kcal Atomic # 7 Polarization: -145.77 SS G_CDS: -7.89 Total: -153.66 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.06 Total: -24.27 kcal Atomic # 14 Polarization: 53.64 SS G_CDS: 2.05 Total: 55.69 kcal Total: -86.22 2.89 -83.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566897169.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.599 kcal (2) G-P(sol) polarization free energy of solvation -86.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds