Wall clock time and date at job start Wed Apr 1 2020 03:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39875 * 125.45579 * 2 1 4 4 C 1.30242 * 110.08156 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.10838 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47241 * 270.03993 * 5 4 3 7 7 O 1.21280 * 119.99466 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00244 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00160 * 180.02562 * 8 6 5 10 10 C 1.53773 * 113.61648 * 254.13612 * 9 8 6 11 11 C 1.54046 * 86.98802 * 270.83748 * 10 9 8 12 12 C 1.52999 * 113.62075 * 220.02265 * 11 10 9 13 13 N 1.46502 * 109.46913 * 272.49214 * 12 11 10 14 14 C 1.36940 * 119.99871 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00212 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99794 * 180.02562 * 14 13 12 17 17 N 1.31623 * 120.00184 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99905 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.46877 * 89.99664 * 18 16 14 20 20 H 1.48497 * 109.47187 * 209.99481 * 18 16 14 21 21 H 1.48500 * 109.47206 * 329.99604 * 18 16 14 22 22 C 1.53779 * 113.61833 * 156.52557 * 9 8 6 23 23 C 1.45926 * 107.78567 * 359.97438 * 4 3 2 24 24 C 1.39952 * 134.03116 * 180.29380 * 23 4 3 25 25 C 1.36464 * 119.63656 * 180.14016 * 24 23 4 26 26 C 1.38966 * 120.62641 * 359.55574 * 25 24 23 27 27 C 1.36589 * 120.82000 * 0.19847 * 26 25 24 28 28 C 1.37032 * 125.46080 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.46518 * 89.98378 * 1 2 3 30 30 H 1.09002 * 109.46980 * 209.97556 * 1 2 3 31 31 H 1.08999 * 109.47295 * 329.98305 * 1 2 3 32 32 H 1.09001 * 109.47304 * 30.03796 * 5 4 3 33 33 H 1.08999 * 109.47632 * 150.03988 * 5 4 3 34 34 H 0.97001 * 119.99977 * 0.02562 * 8 6 5 35 35 H 1.09005 * 112.84815 * 25.33275 * 9 8 6 36 36 H 1.09007 * 113.61298 * 25.43108 * 10 9 8 37 37 H 1.08999 * 113.61903 * 156.33252 * 10 9 8 38 38 H 1.09006 * 113.69033 * 89.12457 * 11 10 9 39 39 H 1.08994 * 109.47250 * 32.48931 * 12 11 10 40 40 H 1.08998 * 109.47206 * 152.49147 * 12 11 10 41 41 H 0.96996 * 120.00238 * 359.97438 * 13 12 11 42 42 H 0.96993 * 120.00177 * 180.02562 * 17 16 14 43 43 H 1.09000 * 113.61994 * 203.66890 * 22 9 8 44 44 H 1.09003 * 113.61170 * 334.57514 * 22 9 8 45 45 H 1.07994 * 120.17950 * 359.97317 * 24 23 4 46 46 H 1.08000 * 119.68826 * 179.76025 * 25 24 23 47 47 H 1.08003 * 119.58908 * 180.22573 * 26 25 24 48 48 H 1.07996 * 120.07958 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2764 1.1394 0.0000 4 6 3.5323 0.7941 0.0005 5 6 4.7113 1.7325 0.0002 6 6 5.1041 2.0452 -1.4208 7 8 4.4870 1.5546 -2.3424 8 7 6.1405 2.8707 -1.6674 9 6 6.5220 3.1751 -3.0487 10 6 7.8108 2.4692 -3.5016 11 6 8.5742 3.6946 -2.9646 12 6 9.7399 4.1294 -3.8551 13 7 10.9461 3.3889 -3.4766 14 6 12.1231 3.6125 -4.1398 15 1 12.1622 4.3344 -4.9421 16 6 13.2658 2.9106 -3.7815 17 7 13.2181 2.0304 -2.8040 18 14 14.8712 3.2151 -4.6866 19 1 15.6247 4.2994 -4.0068 20 1 15.6835 1.9720 -4.6856 21 1 14.5817 3.6161 -6.0868 22 6 7.2860 4.5012 -3.1989 23 6 3.5937 -0.6639 0.0016 24 6 4.6399 -1.5934 0.0076 25 6 4.3566 -2.9283 0.0038 26 6 3.0398 -3.3726 0.0033 27 6 2.0018 -2.4849 0.0025 28 6 2.2600 -1.1161 0.0005 29 1 -0.3632 0.0003 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5141 32 1 4.4415 2.6552 0.5139 33 1 5.5500 1.2626 0.5139 34 1 6.6338 3.2634 -0.9303 35 1 5.6947 3.0659 -3.7501 36 1 8.0197 1.5491 -2.9557 37 1 7.8854 2.3475 -4.5822 38 1 8.8523 3.6115 -1.9139 39 1 9.4981 3.9215 -4.8973 40 1 9.9149 5.1978 -3.7288 41 1 10.9111 2.7408 -2.7558 42 1 14.0166 1.5402 -2.5534 43 1 7.2173 4.9341 -4.1969 44 1 7.0714 5.2206 -2.4086 45 1 5.6658 -1.2561 0.0125 46 1 5.1633 -3.6464 0.0046 47 1 2.8348 -4.4330 0.0040 48 1 0.9830 -2.8433 0.0025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570560894.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:42 Heat of formation + Delta-G solvation = 84.968008 kcal Electronic energy + Delta-G solvation = -28372.348510 eV Core-core repulsion = 24429.527838 eV Total energy + Delta-G solvation = -3942.820672 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.56225 -40.13104 -38.32029 -37.41409 -34.54322 -34.33121 -33.14904 -31.00571 -30.66274 -30.27352 -29.93314 -26.85623 -25.84729 -25.47575 -23.47142 -23.15111 -22.17500 -21.58589 -21.20262 -19.78606 -19.04486 -17.36250 -17.28142 -17.17002 -16.96698 -15.90231 -15.66887 -15.48993 -15.27659 -14.87828 -14.46238 -14.36314 -14.29207 -13.93430 -13.71237 -13.53510 -13.30746 -13.18614 -12.98029 -12.83246 -12.47886 -12.26558 -12.11498 -12.07000 -11.89423 -11.58427 -11.29071 -11.01862 -10.90826 -10.81663 -10.46742 -10.33507 -10.26029 -10.06555 -9.87949 -9.80148 -9.58750 -8.98755 -8.87926 -8.82163 -8.07339 -6.88051 -5.74183 -3.02121 0.72221 1.29800 2.06452 2.17520 2.55399 3.14277 3.44954 3.50060 3.51844 3.60114 4.02541 4.21350 4.35820 4.59824 4.62766 4.68565 4.75295 4.79183 4.85234 4.86906 4.93653 5.07548 5.09679 5.14304 5.14999 5.16953 5.24297 5.35378 5.58299 5.60132 5.75295 5.76714 5.89192 5.96501 6.03765 6.09595 6.13647 6.23674 6.26986 6.31594 6.34017 6.45124 6.59051 6.66149 6.80573 6.80943 6.96541 7.40320 7.44561 7.72269 8.16583 8.45257 9.56184 10.15556 10.50017 11.48832 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.016645 B = 0.001950 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.813598 B =14354.382669 C =15630.186761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.409 5.409 3 N -0.241 5.241 4 C 0.121 3.879 5 C -0.064 4.064 6 C 0.521 3.479 7 O -0.529 6.529 8 N -0.708 5.708 9 C 0.117 3.883 10 C -0.138 4.138 11 C -0.113 4.113 12 C 0.162 3.838 13 N -0.732 5.732 14 C -0.238 4.238 15 H 0.069 0.931 16 C -0.016 4.016 17 N -0.934 5.934 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.138 4.138 23 C -0.164 4.164 24 C -0.036 4.036 25 C -0.161 4.161 26 C -0.070 4.070 27 C -0.144 4.144 28 C 0.128 3.872 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.403 0.597 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.020 0.980 40 H 0.018 0.982 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.128 0.872 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.555 -5.761 10.232 29.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.197 5.197 3 N -0.054 5.054 4 C -0.057 4.057 5 C -0.105 4.105 6 C 0.305 3.695 7 O -0.405 6.405 8 N -0.360 5.360 9 C 0.012 3.988 10 C -0.177 4.177 11 C -0.131 4.131 12 C 0.034 3.966 13 N -0.376 5.376 14 C -0.369 4.369 15 H 0.087 0.913 16 C -0.212 4.212 17 N -0.583 5.583 18 Si 0.738 3.262 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.176 4.176 23 C -0.172 4.172 24 C -0.056 4.056 25 C -0.180 4.180 26 C -0.090 4.090 27 C -0.166 4.166 28 C 0.014 3.986 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.237 0.763 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.038 0.962 40 H 0.036 0.964 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.146 0.854 46 H 0.145 0.855 47 H 0.146 0.854 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -27.951 -5.063 9.435 29.931 hybrid contribution 1.627 -0.564 0.060 1.723 sum -26.324 -5.627 9.494 28.544 Atomic orbital electron populations 1.21725 0.74125 1.04039 1.03032 1.48024 1.05674 1.00976 1.65039 1.76497 1.01943 1.08553 1.18410 1.22569 0.92199 0.91525 0.99402 1.20047 0.94880 0.99607 0.95993 1.20237 0.79919 0.78689 0.90654 1.90745 1.52828 1.50816 1.46111 1.45627 1.33054 1.48664 1.08625 1.21926 0.97201 0.96685 0.83027 1.23450 0.94338 0.98136 1.01757 1.22805 0.94151 0.95617 1.00554 1.20641 0.86054 0.94745 0.95140 1.42346 1.04997 1.48003 1.42217 1.19248 0.87197 1.18053 1.12410 0.91256 1.24739 0.98046 0.99298 0.99086 1.69657 1.28399 1.28874 1.31379 0.86191 0.83915 0.76981 0.79125 1.21774 1.21799 1.20801 1.23306 0.95890 0.95590 1.02843 1.19682 0.93228 0.92471 1.11809 1.20400 0.97923 0.92124 0.95145 1.20684 0.96773 0.95445 1.05120 1.20721 0.92266 0.99293 0.96767 1.19776 0.99932 0.88798 1.08135 1.18803 0.90530 0.89583 0.99707 0.91276 0.89867 0.89470 0.86683 0.86265 0.76286 0.88500 0.91275 0.89216 0.89363 0.96238 0.96429 0.78335 0.93579 0.88772 0.91218 0.85434 0.85451 0.85398 0.85951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.77 11.40 59.85 0.68 1.46 16 2 N -0.41 -4.74 4.05 -65.47 -0.27 -5.00 16 3 N -0.24 -3.21 12.40 34.84 0.43 -2.78 16 4 C 0.12 1.51 5.92 -80.19 -0.48 1.03 16 5 C -0.06 -0.59 6.30 -29.04 -0.18 -0.77 16 6 C 0.52 6.48 7.82 -10.98 -0.09 6.39 16 7 O -0.53 -9.04 15.65 5.56 0.09 -8.95 16 8 N -0.71 -7.71 5.26 -53.02 -0.28 -7.98 16 9 C 0.12 1.48 4.29 -67.12 -0.29 1.19 16 10 C -0.14 -2.05 7.45 -25.78 -0.19 -2.24 16 11 C -0.11 -1.71 3.65 -89.67 -0.33 -2.03 16 12 C 0.16 3.20 6.10 -4.04 -0.02 3.18 16 13 N -0.73 -18.53 5.60 -59.91 -0.34 -18.87 16 14 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 15 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 16 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 17 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 18 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C -0.14 -1.64 7.38 -25.92 -0.19 -1.83 16 23 C -0.16 -2.04 6.33 -105.20 -0.67 -2.71 16 24 C -0.04 -0.38 10.07 -39.58 -0.40 -0.78 16 25 C -0.16 -1.48 9.97 -39.95 -0.40 -1.88 16 26 C -0.07 -0.59 9.96 -39.91 -0.40 -0.98 16 27 C -0.14 -1.33 9.97 -39.79 -0.40 -1.73 16 28 C 0.13 1.51 6.87 -84.18 -0.58 0.93 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.40 3.32 8.70 -40.82 -0.36 2.97 16 35 H 0.10 1.34 7.50 -51.93 -0.39 0.95 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.38 7.90 -51.93 -0.41 0.97 16 38 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.38 10.16 7.67 -40.82 -0.31 9.85 16 42 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 46 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 47 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 48 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 405.23 15.07 6.11 6.11 Total: -1.00 -37.32 405.23 -10.06 -47.37 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.34 Total: 8.39 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -4.17 Total: -8.21 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: 0.28 Total: -62.24 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.32 -10.06 -47.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570560894.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.341 kcal (2) G-P(sol) polarization free energy of solvation -37.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds