Wall clock time and date at job start Wed Apr 1 2020 03:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.46894 * 2 1 4 4 C 1.42906 * 113.99984 * 180.02562 * 3 2 1 5 5 H 1.09002 * 112.84664 * 18.79814 * 4 3 2 6 6 C 1.53962 * 113.53582 * 247.49570 * 4 3 2 7 7 C 1.53771 * 87.01539 * 270.80735 * 6 4 3 8 8 N 1.46905 * 113.61712 * 89.23274 * 7 6 4 9 9 C 1.50704 * 113.61337 * 220.04776 * 7 6 4 10 10 O 1.21284 * 120.00181 * 10.38727 * 9 7 6 11 11 N 1.34782 * 120.00060 * 190.39065 * 9 7 6 12 12 C 1.37100 * 119.99878 * 355.57170 * 11 9 7 13 13 H 1.07998 * 120.00210 * 56.08928 * 12 11 9 14 14 C 1.38956 * 119.99962 * 236.08923 * 12 11 9 15 15 N 1.31410 * 119.99795 * 195.30812 * 14 12 11 16 16 Si 1.86795 * 119.99795 * 15.30583 * 14 12 11 17 17 H 1.48496 * 109.47441 * 94.65991 * 16 14 12 18 18 H 1.48507 * 109.47050 * 214.65828 * 16 14 12 19 19 H 1.48503 * 109.47532 * 334.65662 * 16 14 12 20 20 C 1.46491 * 119.99997 * 175.57503 * 11 9 7 21 21 C 1.53005 * 109.47221 * 274.88665 * 20 11 9 22 22 C 1.50697 * 109.47034 * 175.57084 * 21 20 11 23 23 O 1.20827 * 120.00001 * 359.97438 * 22 21 20 24 24 O 1.34234 * 119.99655 * 180.02562 * 22 21 20 25 25 C 1.45200 * 116.99624 * 179.97438 * 24 22 21 26 26 C 1.53775 * 113.61927 * 149.99814 * 4 3 2 27 27 C 1.53003 * 113.61373 * 334.56632 * 26 4 3 28 28 C 1.52992 * 113.61649 * 203.66359 * 26 4 3 29 29 H 1.09001 * 109.47662 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47060 * 300.00033 * 1 2 3 31 31 H 1.09000 * 109.47527 * 59.99867 * 1 2 3 32 32 H 1.08997 * 109.46949 * 240.00174 * 2 1 3 33 33 H 1.09000 * 109.47527 * 120.00133 * 2 1 3 34 34 H 1.08999 * 113.60846 * 156.28261 * 6 4 3 35 35 H 1.08997 * 113.66001 * 25.33713 * 6 4 3 36 36 H 1.00896 * 111.00097 * 92.34773 * 8 7 6 37 37 H 1.00901 * 111.00153 * 216.30584 * 8 7 6 38 38 H 0.97000 * 119.99658 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.47237 * 154.88457 * 20 11 9 40 40 H 1.09004 * 109.47275 * 34.88630 * 20 11 9 41 41 H 1.08994 * 109.46526 * 55.57283 * 21 20 11 42 42 H 1.08997 * 109.46699 * 295.57332 * 21 20 11 43 43 H 1.08998 * 109.47350 * 299.99884 * 25 24 22 44 44 H 1.09000 * 109.47165 * 60.00315 * 25 24 22 45 45 H 1.09004 * 109.46839 * 179.97438 * 25 24 22 46 46 H 1.08997 * 109.47395 * 157.49120 * 27 26 4 47 47 H 1.09001 * 109.47125 * 277.50048 * 27 26 4 48 48 H 1.09004 * 109.46994 * 37.49792 * 27 26 4 49 49 H 1.09004 * 109.47666 * 325.42054 * 28 26 4 50 50 H 1.09004 * 109.47355 * 85.41755 * 28 26 4 51 51 H 1.09000 * 109.47378 * 205.41611 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9277 0.5457 -0.3246 6 6 4.0016 2.0471 1.3033 7 6 3.8396 3.4325 0.6561 8 7 2.5264 4.0451 0.8977 9 6 4.9842 4.3701 0.9423 10 8 5.9961 3.9507 1.4629 11 7 4.8833 5.6749 0.6198 12 6 3.7779 6.1320 -0.0501 13 1 2.7922 5.9693 0.3602 14 6 3.9257 6.8046 -1.2570 15 7 2.9246 7.4994 -1.7489 16 14 5.5475 6.7211 -2.1802 17 1 5.4863 5.6351 -3.1912 18 1 5.7971 8.0173 -2.8605 19 1 6.6485 6.4445 -1.2227 20 6 5.9548 6.6047 0.9851 21 6 5.7378 7.0955 2.4179 22 6 6.8964 7.9657 2.8317 23 8 7.8030 8.1718 2.0600 24 8 6.9218 8.5111 4.0580 25 6 8.0690 9.3376 4.3882 26 6 3.9483 2.7253 -0.7051 27 6 2.9870 3.2758 -1.7605 28 6 5.3846 2.5979 -1.2166 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.0394 1.7705 1.4890 35 1 3.3596 1.8925 2.1705 36 1 2.5463 4.6311 1.7188 37 1 2.2155 4.5643 0.0903 38 1 3.0277 7.9686 -2.5916 39 1 5.9453 7.4557 0.3041 40 1 6.9164 6.0957 0.9171 41 1 5.6688 6.2392 3.0887 42 1 4.8141 7.6720 2.4684 43 1 8.9791 8.7425 4.3135 44 1 8.1248 10.1758 3.6937 45 1 7.9639 9.7153 5.4053 46 1 3.1953 4.3328 -1.9256 47 1 3.1203 2.7289 -2.6939 48 1 1.9604 3.1577 -1.4136 49 1 5.9617 1.9793 -0.5292 50 1 5.3792 2.1359 -2.2038 51 1 5.8364 3.5878 -1.2812 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578087023.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:16 Heat of formation + Delta-G solvation = -138.280533 kcal Electronic energy + Delta-G solvation = -33120.404621 eV Core-core repulsion = 28828.301495 eV Total energy + Delta-G solvation = -4292.103126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.15118 -41.55672 -39.71527 -37.76626 -37.31227 -36.92578 -34.25304 -33.42653 -32.22549 -31.85026 -30.79908 -28.78616 -27.98184 -26.98979 -26.13480 -24.57653 -23.62293 -23.08883 -21.99669 -21.18658 -19.68408 -18.94169 -18.64442 -17.90341 -17.81838 -17.59499 -16.94121 -16.92337 -16.59725 -16.27427 -16.01753 -15.67405 -15.54631 -15.37254 -14.87995 -14.50993 -14.41712 -14.20706 -13.93198 -13.82509 -13.67465 -13.65082 -13.47579 -13.22109 -13.07384 -12.99435 -12.98620 -12.85510 -12.66585 -12.55057 -12.18753 -12.11109 -12.00382 -11.88459 -11.80553 -11.72485 -11.67456 -11.39240 -11.09470 -10.95161 -10.56197 -10.10168 -9.65482 -9.04257 -8.40486 -6.27956 1.05128 1.18945 1.28751 1.39612 1.57076 1.89230 2.20300 2.64963 2.79562 2.95139 3.45879 3.68628 3.72366 3.86728 3.91056 4.05031 4.09145 4.21170 4.27030 4.27998 4.31682 4.36804 4.40475 4.45868 4.51759 4.58607 4.65262 4.65463 4.72729 4.75045 4.83293 4.89455 4.92430 5.03370 5.04597 5.13582 5.17687 5.20382 5.25493 5.30080 5.41233 5.50535 5.54713 5.69787 6.15384 6.20920 6.44097 6.61473 6.63245 6.76025 7.03342 7.40680 7.78911 8.62548 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013304 B = 0.003994 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.109398 B = 7008.029262 C = 7969.385117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 O -0.355 6.355 4 C 0.098 3.902 5 H 0.089 0.911 6 C -0.127 4.127 7 C 0.110 3.890 8 N -0.795 5.795 9 C 0.479 3.521 10 O -0.607 6.607 11 N -0.476 5.476 12 C -0.346 4.346 13 H 0.112 0.888 14 C 0.064 3.936 15 N -0.882 5.882 16 Si 0.881 3.119 17 H -0.272 1.272 18 H -0.289 1.289 19 H -0.261 1.261 20 C 0.126 3.874 21 C -0.114 4.114 22 C 0.473 3.527 23 O -0.541 6.541 24 O -0.361 6.361 25 C 0.026 3.974 26 C -0.065 4.065 27 C -0.128 4.128 28 C -0.125 4.125 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.334 0.666 37 H 0.360 0.640 38 H 0.276 0.724 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.109 0.891 42 H 0.124 0.876 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.138 0.862 46 H 0.045 0.955 47 H 0.054 0.946 48 H 0.072 0.928 49 H 0.067 0.933 50 H 0.077 0.923 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.375 -8.191 5.920 10.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 O -0.273 6.273 4 C 0.040 3.960 5 H 0.106 0.894 6 C -0.166 4.166 7 C 0.013 3.987 8 N -0.330 5.330 9 C 0.268 3.732 10 O -0.490 6.490 11 N -0.198 5.198 12 C -0.474 4.474 13 H 0.128 0.872 14 C -0.143 4.143 15 N -0.518 5.518 16 Si 0.707 3.293 17 H -0.198 1.198 18 H -0.216 1.216 19 H -0.185 1.185 20 C 0.002 3.998 21 C -0.153 4.153 22 C 0.317 3.683 23 O -0.431 6.431 24 O -0.277 6.277 25 C -0.067 4.067 26 C -0.066 4.066 27 C -0.185 4.185 28 C -0.183 4.183 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.147 0.853 37 H 0.180 0.820 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.127 0.873 42 H 0.142 0.858 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.156 0.844 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.091 0.909 49 H 0.086 0.914 50 H 0.096 0.904 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.083 -8.734 5.876 10.527 hybrid contribution 1.850 1.625 -0.957 2.642 sum 1.767 -7.110 4.919 8.824 Atomic orbital electron populations 1.21699 0.93166 1.02871 1.02427 1.22702 0.96174 0.83787 1.00347 1.88048 1.18711 1.26351 1.94203 1.22788 0.82331 0.96253 0.94657 0.89358 1.23409 1.01233 0.93438 0.98500 1.21865 0.86776 0.92052 0.98027 1.59010 1.22574 1.41674 1.09782 1.22246 0.89276 0.83140 0.78528 1.90508 1.33085 1.77217 1.48174 1.43784 1.18960 1.05009 1.52000 1.19326 0.87083 1.38496 1.02471 0.87156 1.25724 0.97339 0.94327 0.96872 1.69731 1.32864 1.28579 1.20628 0.86840 0.84219 0.77708 0.80532 1.19752 1.21561 1.18542 1.21322 0.91675 0.93358 0.93469 1.21668 0.96031 0.99288 0.98297 1.23861 0.87151 0.77628 0.79614 1.90635 1.39164 1.59694 1.53642 1.86514 1.47457 1.60895 1.32813 1.23594 0.86046 0.93425 1.03617 1.22014 0.95634 0.95629 0.93315 1.21509 0.99804 1.00297 0.96882 1.21581 0.94052 1.00827 1.01823 0.89316 0.92673 0.92692 0.92843 0.92994 0.89023 0.90348 0.85307 0.81959 0.91383 0.92193 0.93159 0.87305 0.85812 0.92097 0.92013 0.84438 0.93591 0.92685 0.90874 0.91401 0.90407 0.95367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 10.28 71.98 0.74 -1.99 16 2 C 0.05 1.00 6.50 71.98 0.47 1.46 16 3 O -0.35 -10.28 8.31 -148.98 -1.24 -11.52 16 4 C 0.10 2.87 3.78 31.18 0.12 2.99 16 5 H 0.09 2.16 7.83 -2.39 -0.02 2.15 16 6 C -0.13 -4.12 6.76 31.18 0.21 -3.91 16 7 C 0.11 4.06 0.97 3.30 0.00 4.07 16 8 N -0.79 -28.90 7.46 -152.43 -1.14 -30.04 16 9 C 0.48 20.53 5.16 87.66 0.45 20.98 16 10 O -0.61 -28.25 15.35 -3.04 -0.05 -28.29 16 11 N -0.48 -20.90 1.81 -635.54 -1.15 -22.05 16 12 C -0.35 -15.88 6.87 84.04 0.58 -15.30 16 13 H 0.11 5.13 4.81 -2.91 -0.01 5.11 16 14 C 0.06 3.15 4.48 84.93 0.38 3.53 16 15 N -0.88 -45.34 13.96 21.66 0.30 -45.04 16 16 Si 0.88 41.29 26.50 68.60 1.82 43.11 16 17 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 19 H -0.26 -12.65 5.31 99.48 0.53 -12.12 16 20 C 0.13 5.49 2.71 86.38 0.23 5.72 16 21 C -0.11 -4.12 6.10 29.85 0.18 -3.94 16 22 C 0.47 16.76 7.96 71.23 0.57 17.32 16 23 O -0.54 -22.22 15.68 21.96 0.34 -21.88 16 24 O -0.36 -10.53 10.57 -51.45 -0.54 -11.07 16 25 C 0.03 0.55 10.56 113.37 1.20 1.75 16 26 C -0.06 -2.23 1.26 -51.66 -0.07 -2.29 16 27 C -0.13 -4.58 7.78 71.98 0.56 -4.02 16 28 C -0.13 -4.32 8.21 71.98 0.59 -3.73 16 29 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.09 3.05 6.91 -2.39 -0.02 3.04 16 35 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.33 12.10 8.12 -89.70 -0.73 11.37 16 37 H 0.36 14.33 4.51 -89.69 -0.40 13.92 16 38 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 39 H 0.06 2.77 5.55 -2.39 -0.01 2.76 16 40 H 0.05 2.40 7.20 -2.38 -0.02 2.38 16 41 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 42 H 0.12 4.14 8.14 -2.39 -0.02 4.12 16 43 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 44 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 45 H 0.14 1.80 8.14 -2.38 -0.02 1.78 16 46 H 0.05 1.93 6.33 -2.39 -0.02 1.91 16 47 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 48 H 0.07 2.63 6.29 -2.38 -0.01 2.62 16 49 H 0.07 2.20 7.38 -2.39 -0.02 2.19 16 50 H 0.08 2.28 8.12 -2.38 -0.02 2.26 16 51 H 0.03 1.14 7.15 -2.39 -0.02 1.12 16 Total: -1.00 -59.75 394.70 4.21 -55.55 By element: Atomic # 1 Polarization: 48.95 SS G_CDS: -0.36 Total: 48.60 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: 6.22 Total: 22.64 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -1.98 Total: -97.13 kcal Atomic # 8 Polarization: -71.28 SS G_CDS: -1.48 Total: -72.76 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.82 Total: 43.11 kcal Total: -59.75 4.21 -55.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578087023.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.735 kcal (2) G-P(sol) polarization free energy of solvation -59.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds