Wall clock time and date at job start Wed Apr 1 2020 03:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81404 * 109.46841 * 2 1 4 4 C 1.81397 * 102.99945 * 179.97438 * 3 2 1 5 5 H 1.08991 * 109.47543 * 304.99786 * 4 3 2 6 6 C 1.53000 * 109.47318 * 65.00056 * 4 3 2 7 7 C 1.52998 * 109.47189 * 184.99664 * 4 3 2 8 8 C 1.50702 * 109.47037 * 64.99850 * 7 4 3 9 9 N 1.30290 * 126.35148 * 269.69056 * 8 7 4 10 10 N 1.28530 * 110.05420 * 179.82077 * 9 8 7 11 11 C 1.31211 * 109.85959 * 0.45555 * 10 9 8 12 12 N 1.38579 * 126.47428 * 179.73433 * 11 10 9 13 13 C 1.46896 * 110.99773 * 236.04394 * 12 11 10 14 14 C 1.50700 * 109.47486 * 62.86487 * 13 12 11 15 15 H 1.07993 * 119.99842 * 4.56893 * 14 13 12 16 16 C 1.37871 * 120.00080 * 184.56937 * 14 13 12 17 17 N 1.31516 * 120.00194 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00171 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47326 * 89.99540 * 18 16 14 20 20 H 1.48501 * 109.47573 * 209.99724 * 18 16 14 21 21 H 1.48504 * 109.47250 * 330.00009 * 18 16 14 22 22 C 1.46912 * 110.99768 * 359.97438 * 12 11 10 23 23 C 1.53000 * 109.46746 * 162.91732 * 22 12 11 24 24 O 1.42891 * 109.47415 * 66.51180 * 23 22 12 25 25 C 1.42898 * 114.00182 * 179.97438 * 24 23 22 26 26 N 1.36450 * 107.05536 * 359.72341 * 11 10 9 27 27 C 1.46496 * 127.13772 * 179.97438 * 26 11 10 28 28 H 1.08996 * 109.47560 * 60.00588 * 1 2 3 29 29 H 1.09007 * 109.47193 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47361 * 299.99998 * 1 2 3 31 31 H 1.08996 * 109.47757 * 240.00039 * 2 1 3 32 32 H 1.09002 * 109.47223 * 119.99099 * 2 1 3 33 33 H 1.09005 * 109.47036 * 300.00277 * 6 4 3 34 34 H 1.09005 * 109.47212 * 59.99517 * 6 4 3 35 35 H 1.08995 * 109.47414 * 180.02562 * 6 4 3 36 36 H 1.08997 * 109.47631 * 184.99917 * 7 4 3 37 37 H 1.09003 * 109.47467 * 305.00441 * 7 4 3 38 38 H 1.09008 * 109.47186 * 182.86448 * 13 12 11 39 39 H 1.08994 * 109.47416 * 302.85961 * 13 12 11 40 40 H 0.97000 * 120.00576 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.46753 * 282.91782 * 22 12 11 42 42 H 1.08996 * 109.46670 * 42.91833 * 22 12 11 43 43 H 1.09005 * 109.46805 * 186.51122 * 23 22 12 44 44 H 1.08998 * 109.47106 * 306.50660 * 23 22 12 45 45 H 1.09003 * 109.47516 * 180.02562 * 25 24 23 46 46 H 1.09004 * 109.47217 * 299.99535 * 25 24 23 47 47 H 1.08996 * 109.47463 * 59.99865 * 25 24 23 48 48 H 1.09004 * 109.47284 * 270.02952 * 27 26 11 49 49 H 1.09001 * 109.47614 * 30.02981 * 27 26 11 50 50 H 1.08998 * 109.47408 * 150.02962 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1345 1.7103 0.0000 4 6 3.9370 1.5059 0.0008 5 1 4.2313 0.8795 0.8428 6 6 4.3756 0.8426 -1.3063 7 6 4.6056 2.8764 0.1265 8 6 4.2718 3.4770 1.4678 9 7 3.2530 4.2425 1.7392 10 7 3.2691 4.5738 2.9810 11 6 4.3129 4.0408 3.5710 12 7 4.6657 4.1793 4.9039 13 6 6.0296 4.7089 5.0352 14 6 6.0927 6.0891 4.4333 15 1 5.1932 6.5586 4.0637 16 6 7.2988 6.7523 4.3547 17 7 7.3540 7.9566 3.8290 18 14 8.8549 5.9400 4.9934 19 1 9.4931 5.1641 3.8997 20 1 9.7961 6.9829 5.4748 21 1 8.5127 5.0269 6.1135 22 6 3.7013 5.0265 5.6185 23 6 3.8603 4.8201 7.1261 24 8 5.1340 5.3158 7.5431 25 6 5.3843 5.1710 8.9425 26 7 4.9853 3.3243 2.6242 27 6 6.2167 2.5523 2.8083 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.8993 -0.1338 -1.3959 34 1 4.0813 1.4690 -2.1484 35 1 5.4586 0.7193 -1.3056 36 1 5.6860 2.7631 0.0379 37 1 4.2428 3.5317 -0.6654 38 1 6.2997 4.7598 6.0901 39 1 6.7260 4.0527 4.5132 40 1 8.2026 8.4231 3.7732 41 1 3.8853 6.0725 5.3735 42 1 2.6887 4.7559 5.3195 43 1 3.0713 5.3581 7.6517 44 1 3.7909 3.7570 7.3566 45 1 6.3703 5.5712 9.1786 46 1 4.6269 5.7166 9.5054 47 1 5.3464 4.1154 9.2112 48 1 7.0786 3.1926 2.6203 49 1 6.2601 2.1756 3.8302 50 1 6.2278 1.7143 2.1115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650280770.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:07 Heat of formation + Delta-G solvation = 22.124893 kcal Electronic energy + Delta-G solvation = -29255.056777 eV Core-core repulsion = 25444.954975 eV Total energy + Delta-G solvation = -3810.101802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.183 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.76268 -39.55861 -37.79946 -36.56793 -35.39176 -34.60147 -33.67288 -31.57165 -31.01426 -29.41502 -28.08137 -27.43646 -26.96311 -24.53708 -24.36686 -23.51625 -22.95624 -21.43525 -21.23299 -19.25716 -18.14641 -17.59650 -17.43398 -17.23497 -16.85930 -16.63098 -16.38016 -15.97894 -15.82448 -15.61566 -15.56623 -15.34319 -14.70131 -14.49461 -14.18970 -14.05256 -13.75128 -13.54784 -13.45195 -13.29764 -13.18914 -13.10349 -12.86415 -12.72417 -12.58149 -12.55655 -12.41356 -12.25513 -12.16086 -12.07918 -11.74433 -11.73222 -11.72234 -11.14194 -10.90744 -10.78510 -10.57313 -10.49330 -10.36814 -8.99821 -8.52227 -8.27974 -6.32723 0.77577 0.98433 1.30673 1.36770 1.48685 1.55156 1.74894 2.07686 2.34181 2.97487 3.04031 3.13300 3.37054 3.73233 3.80006 4.02796 4.04575 4.10853 4.12851 4.15365 4.25168 4.29276 4.32782 4.41624 4.50004 4.52303 4.55542 4.60763 4.62794 4.68553 4.74173 4.81304 4.83756 4.87045 4.90961 4.91706 4.96524 5.07386 5.10167 5.18963 5.22579 5.29369 5.31148 5.47262 5.78217 5.91477 6.21767 6.41484 6.50208 6.70802 7.29754 8.00737 8.89678 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.013337 B = 0.003504 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.959686 B = 7988.044920 C = 9157.911365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 S -0.301 6.301 4 C -0.037 4.037 5 H 0.088 0.912 6 C -0.139 4.139 7 C -0.005 4.005 8 C 0.166 3.834 9 N -0.307 5.307 10 N -0.378 5.378 11 C 0.388 3.612 12 N -0.439 5.439 13 C 0.160 3.840 14 C -0.532 4.532 15 H 0.017 0.983 16 C 0.012 3.988 17 N -0.952 5.952 18 Si 0.945 3.055 19 H -0.260 1.260 20 H -0.289 1.289 21 H -0.235 1.235 22 C 0.075 3.925 23 C 0.078 3.922 24 O -0.403 6.403 25 C 0.023 3.977 26 N -0.481 5.481 27 C 0.070 3.930 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.037 0.963 40 H 0.264 0.736 41 H 0.032 0.968 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.051 0.949 47 H 0.055 0.945 48 H 0.073 0.927 49 H 0.097 0.903 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.908 -22.115 -2.649 22.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.231 4.231 3 S -0.076 6.076 4 C -0.167 4.167 5 H 0.107 0.893 6 C -0.197 4.197 7 C -0.046 4.046 8 C -0.103 4.103 9 N -0.145 5.145 10 N -0.223 5.223 11 C 0.031 3.969 12 N -0.162 5.162 13 C 0.034 3.966 14 C -0.571 4.571 15 H 0.036 0.964 16 C -0.186 4.186 17 N -0.593 5.593 18 Si 0.767 3.233 19 H -0.184 1.184 20 H -0.215 1.215 21 H -0.158 1.158 22 C -0.053 4.053 23 C 0.001 3.999 24 O -0.323 6.323 25 C -0.073 4.073 26 N -0.176 5.176 27 C -0.072 4.072 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.066 0.934 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.141 0.859 37 H 0.116 0.884 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.091 0.909 49 H 0.115 0.885 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.519 -20.643 -2.730 21.308 hybrid contribution 2.193 -0.227 0.351 2.233 sum -2.326 -20.870 -2.380 21.133 Atomic orbital electron populations 1.21492 0.92081 1.03319 1.02313 1.23345 1.00379 0.94111 1.05297 1.88026 1.07357 1.14184 1.98011 1.23061 0.92235 0.98219 1.03212 0.89345 1.22051 1.03049 1.00637 0.93994 1.19974 1.02636 0.94500 0.87477 1.24918 0.92183 1.02506 0.90665 1.73736 1.19886 1.13593 1.07268 1.74431 1.22429 1.23905 1.01509 1.22799 0.91312 0.93193 0.89635 1.59365 1.06199 1.48254 1.02373 1.20587 0.83809 0.91982 1.00212 1.21607 0.94177 1.01888 1.39439 0.96434 1.25877 1.02928 0.95077 0.94677 1.70122 1.27119 1.14939 1.47079 0.85753 0.78145 0.78982 0.80372 1.18447 1.21466 1.15835 1.21996 0.94730 0.95546 0.93030 1.22501 0.85900 0.99213 0.92263 1.88129 1.35739 1.83569 1.24854 1.22882 1.01915 1.01145 0.81314 1.45992 1.23226 1.40276 1.08075 1.22353 0.82742 0.96193 1.05873 0.92044 0.89001 0.93412 0.88421 0.90359 0.91166 0.91206 0.89343 0.85888 0.88376 0.89979 0.94519 0.92754 0.94963 0.89156 0.90776 0.91053 0.89982 0.93066 0.92602 0.90871 0.88454 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 9.92 71.98 0.71 -1.51 16 2 C -0.08 -1.47 6.36 71.98 0.46 -1.01 16 3 S -0.30 -7.92 20.38 -56.49 -1.15 -9.08 16 4 C -0.04 -0.75 2.81 30.59 0.09 -0.66 16 5 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 6 C -0.14 -1.75 9.10 71.98 0.66 -1.10 16 7 C -0.01 -0.14 4.90 29.85 0.15 0.01 16 8 C 0.17 6.15 6.75 137.64 0.93 7.08 16 9 N -0.31 -14.17 11.96 -49.54 -0.59 -14.76 16 10 N -0.38 -18.86 11.00 -58.01 -0.64 -19.50 16 11 C 0.39 17.46 6.25 260.12 1.63 19.08 16 12 N -0.44 -18.82 4.72 -710.35 -3.35 -22.18 16 13 C 0.16 7.36 3.69 85.56 0.32 7.67 16 14 C -0.53 -30.79 8.20 25.60 0.21 -30.58 16 15 H 0.02 1.21 6.72 -2.91 -0.02 1.19 16 16 C 0.01 0.68 5.47 84.65 0.46 1.14 16 17 N -0.95 -61.04 13.96 21.45 0.30 -60.74 16 18 Si 0.95 42.48 27.38 68.60 1.88 44.36 16 19 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.24 -9.55 6.68 99.48 0.66 -8.88 16 22 C 0.07 3.12 4.95 86.30 0.43 3.55 16 23 C 0.08 2.54 6.24 71.98 0.45 2.99 16 24 O -0.40 -14.81 7.69 -148.98 -1.15 -15.95 16 25 C 0.02 0.61 11.01 113.37 1.25 1.85 16 26 N -0.48 -17.89 3.21 -538.20 -1.73 -19.62 16 27 C 0.07 1.84 9.18 127.77 1.17 3.01 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.10 1.30 7.14 -2.39 -0.02 1.28 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 0.75 6.92 -2.38 -0.02 0.73 16 34 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.12 2.28 7.92 -2.39 -0.02 2.26 16 37 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.08 3.78 4.69 -2.38 -0.01 3.77 16 39 H 0.04 1.57 4.48 -2.39 -0.01 1.56 16 40 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 41 H 0.03 1.65 6.14 -2.39 -0.01 1.64 16 42 H 0.09 3.67 7.45 -2.39 -0.02 3.65 16 43 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 46 H 0.05 1.13 8.14 -2.38 -0.02 1.12 16 47 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.07 2.04 7.80 -2.38 -0.02 2.03 16 49 H 0.10 2.43 7.61 -2.39 -0.02 2.41 16 50 H 0.12 2.05 7.88 -2.39 -0.02 2.03 16 Total: -1.00 -84.49 404.92 3.34 -81.15 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.87 Total: 24.79 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 8.90 Total: 11.53 kcal Atomic # 7 Polarization: -130.79 SS G_CDS: -6.01 Total: -136.80 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -1.15 Total: -15.95 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.88 Total: 44.36 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.15 Total: -9.08 kcal Total: -84.49 3.34 -81.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650280770.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.273 kcal (2) G-P(sol) polarization free energy of solvation -84.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds