Wall clock time and date at job start Wed Apr 1 2020 04:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34952 * 126.03799 * 2 1 4 4 C 1.35307 * 107.74758 * 180.15228 * 3 2 1 5 5 C 1.50706 * 126.04056 * 179.87545 * 4 3 2 6 6 C 1.50703 * 109.46997 * 269.71235 * 5 4 3 7 7 O 1.21281 * 119.99990 * 359.97438 * 6 5 4 8 8 N 1.34770 * 119.99651 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99664 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47014 * 179.97438 * 9 8 6 11 11 C 1.38233 * 120.00109 * 269.72616 * 10 9 8 12 12 C 1.38238 * 119.99754 * 179.76611 * 11 10 9 13 13 C 1.38234 * 120.00038 * 0.48818 * 12 11 10 14 14 C 1.50696 * 120.00185 * 179.77054 * 13 12 11 15 15 C 1.53000 * 109.46730 * 270.01952 * 14 13 12 16 16 N 1.46506 * 109.46992 * 179.97438 * 15 14 13 17 17 C 1.36940 * 119.99846 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00020 * 0.02562 * 17 16 15 19 19 C 1.38815 * 119.99740 * 180.02562 * 17 16 15 20 20 N 1.31616 * 120.00079 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99934 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47470 * 90.00358 * 21 19 17 23 23 H 1.48503 * 109.47197 * 209.99911 * 21 19 17 24 24 H 1.48499 * 109.47555 * 329.99832 * 21 19 17 25 25 C 1.38238 * 120.00047 * 359.78460 * 13 12 11 26 26 C 1.38235 * 120.00108 * 359.96171 * 25 13 12 27 27 C 1.39867 * 107.92155 * 359.60625 * 4 3 2 28 28 N 1.30836 * 108.20249 * 0.24813 * 27 4 3 29 29 H 1.08998 * 109.47182 * 270.25911 * 1 2 3 30 30 H 1.09002 * 109.47693 * 30.25941 * 1 2 3 31 31 H 1.09004 * 109.47037 * 150.26404 * 1 2 3 32 32 H 1.08001 * 126.12498 * 359.97438 * 3 2 1 33 33 H 1.08997 * 109.47052 * 149.70817 * 5 4 3 34 34 H 1.09000 * 109.46921 * 29.70857 * 5 4 3 35 35 H 0.97000 * 120.00231 * 359.97438 * 8 6 5 36 36 H 1.09000 * 109.46864 * 60.00469 * 9 8 6 37 37 H 1.09000 * 109.47078 * 299.99722 * 9 8 6 38 38 H 1.08004 * 119.99934 * 0.02562 * 11 10 9 39 39 H 1.07999 * 119.99931 * 180.25459 * 12 11 10 40 40 H 1.09000 * 109.47119 * 30.01506 * 14 13 12 41 41 H 1.09000 * 109.47160 * 150.02459 * 14 13 12 42 42 H 1.09004 * 109.47390 * 299.99815 * 15 14 13 43 43 H 1.09005 * 109.47322 * 60.00173 * 15 14 13 44 44 H 0.97001 * 119.99860 * 0.02562 * 16 15 14 45 45 H 0.97000 * 119.99962 * 180.02562 * 20 19 17 46 46 H 1.08000 * 120.00559 * 179.97438 * 25 13 12 47 47 H 1.07999 * 120.00165 * 179.97438 * 26 25 13 48 48 H 1.08000 * 125.89873 * 180.26177 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5436 0.6666 -0.0034 5 6 4.7679 1.5454 -0.0073 6 6 5.1762 1.8318 -1.4295 7 8 4.5362 1.3676 -2.3492 8 7 6.2523 2.6037 -1.6791 9 6 6.6495 2.8817 -3.0616 10 6 7.8730 3.7616 -3.0656 11 6 7.7352 5.1370 -3.0785 12 6 8.8575 5.9440 -3.0772 13 6 10.1176 5.3757 -3.0732 14 6 11.3411 6.2554 -3.0770 15 6 11.7559 6.5457 -4.5208 16 7 12.9450 7.4015 -4.5245 17 6 13.5017 7.7948 -5.7122 18 1 13.0640 7.4745 -6.6461 19 6 14.6287 8.6053 -5.7158 20 7 15.1636 8.9837 -6.8573 21 14 15.3853 9.1599 -4.1005 22 1 16.4033 8.1703 -3.6650 23 1 16.0303 10.4848 -4.2850 24 1 14.3241 9.2657 -3.0672 25 6 10.2554 4.0002 -3.0659 26 6 9.1331 3.1931 -3.0619 27 6 3.5346 -0.7320 0.0036 28 7 2.2891 -1.1327 0.0055 29 1 -0.3633 0.0046 1.0276 30 1 -0.3634 0.8876 -0.5178 31 1 -0.3633 -0.8924 -0.5097 32 1 1.9281 2.1194 -0.0004 33 1 5.5820 1.0366 0.5090 34 1 4.5440 2.4826 0.5021 35 1 6.7639 2.9752 -0.9435 36 1 5.8353 3.3899 -3.5783 37 1 6.8740 1.9443 -3.5706 38 1 6.7507 5.5810 -3.0853 39 1 8.7499 7.0186 -3.0831 40 1 11.1162 7.1928 -2.5681 41 1 12.1554 5.7476 -2.5602 42 1 11.9808 5.6084 -5.0297 43 1 10.9416 7.0536 -5.0377 44 1 13.3383 7.6890 -3.6857 45 1 15.9513 9.5497 -6.8597 46 1 11.2398 3.5560 -3.0632 47 1 9.2408 2.1185 -3.0567 48 1 4.4054 -1.3709 0.0070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690793436.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:45 Heat of formation + Delta-G solvation = 49.143555 kcal Electronic energy + Delta-G solvation = -26994.244385 eV Core-core repulsion = 23049.870249 eV Total energy + Delta-G solvation = -3944.374136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.14484 -40.79990 -40.03289 -37.32714 -35.97361 -34.52619 -34.27945 -33.02572 -32.52885 -31.81213 -30.30400 -29.10088 -27.28600 -26.22912 -24.75990 -23.61118 -23.10468 -22.02836 -21.94277 -21.59889 -20.85314 -19.68933 -18.27359 -17.72905 -17.14597 -16.83206 -16.73792 -16.31529 -16.10152 -16.07226 -15.87439 -15.72197 -15.30942 -15.06028 -14.80443 -14.53626 -14.34770 -14.21607 -14.03659 -13.91339 -13.63050 -13.57153 -13.40027 -13.17370 -13.05155 -12.94578 -12.62886 -12.55697 -12.35462 -12.05289 -11.89410 -11.77958 -11.77184 -11.52038 -10.98261 -10.94089 -10.34381 -10.03020 -9.79006 -9.54895 -9.32329 -9.27331 -8.03654 -5.38609 0.29422 0.53527 0.99103 1.38735 1.43314 1.50836 1.71086 1.79097 1.79741 2.47187 2.48884 2.95777 3.27710 3.54854 3.67154 3.75671 3.90610 4.01389 4.07952 4.17729 4.20264 4.22868 4.31631 4.37063 4.41104 4.43845 4.50926 4.54546 4.59692 4.68278 4.73649 4.78461 4.81636 4.87328 4.91858 5.09637 5.11748 5.20642 5.25371 5.26249 5.47767 5.51496 5.65981 5.72190 5.73918 5.79658 6.10225 6.17478 6.19905 6.69052 6.75903 7.06728 7.39869 7.81385 8.02594 9.17927 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.043320 B = 0.001329 C = 0.001326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.196737 B =21059.061788 C =21107.842310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.385 5.385 3 C 0.065 3.935 4 C -0.238 4.238 5 C -0.050 4.050 6 C 0.510 3.490 7 O -0.585 6.585 8 N -0.716 5.716 9 C 0.170 3.830 10 C -0.113 4.113 11 C -0.097 4.097 12 C -0.125 4.125 13 C -0.074 4.074 14 C -0.083 4.083 15 C 0.162 3.838 16 N -0.759 5.759 17 C -0.243 4.243 18 H 0.052 0.948 19 C -0.064 4.064 20 N -0.985 5.985 21 Si 0.961 3.039 22 H -0.276 1.276 23 H -0.295 1.295 24 H -0.247 1.247 25 C -0.125 4.125 26 C -0.099 4.099 27 C 0.047 3.953 28 N -0.344 5.344 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.201 0.799 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.415 0.585 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.139 0.861 39 H 0.129 0.871 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.020 0.980 43 H 0.019 0.981 44 H 0.368 0.632 45 H 0.259 0.741 46 H 0.128 0.872 47 H 0.137 0.863 48 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.989 -16.242 22.599 40.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.167 5.167 3 C -0.082 4.082 4 C -0.250 4.250 5 C -0.090 4.090 6 C 0.299 3.701 7 O -0.464 6.464 8 N -0.369 5.369 9 C 0.047 3.953 10 C -0.113 4.113 11 C -0.116 4.116 12 C -0.143 4.143 13 C -0.075 4.075 14 C -0.120 4.120 15 C 0.036 3.964 16 N -0.405 5.405 17 C -0.374 4.374 18 H 0.070 0.930 19 C -0.255 4.255 20 N -0.635 5.635 21 Si 0.787 3.213 22 H -0.202 1.202 23 H -0.221 1.221 24 H -0.172 1.172 25 C -0.143 4.143 26 C -0.117 4.117 27 C -0.138 4.138 28 N -0.166 5.166 29 H 0.108 0.892 30 H 0.129 0.871 31 H 0.103 0.897 32 H 0.218 0.782 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.252 0.748 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.157 0.843 39 H 0.147 0.853 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.202 0.798 45 H 0.068 0.932 46 H 0.146 0.854 47 H 0.155 0.845 48 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -30.434 -17.592 21.712 41.317 hybrid contribution 1.651 1.313 0.198 2.119 sum -28.783 -16.278 21.910 39.667 Atomic orbital electron populations 1.22150 0.72359 1.05589 1.04603 1.48757 1.07870 1.03544 1.56481 1.22839 0.90818 0.94417 1.00154 1.19742 0.94639 0.93481 1.17122 1.19943 0.95860 1.01389 0.91854 1.21363 0.79256 0.76933 0.92596 1.90711 1.54751 1.52644 1.48334 1.46036 1.30269 1.52047 1.08547 1.19986 0.93506 0.97766 0.84076 1.19797 0.94132 0.93878 1.03508 1.21199 0.99041 0.92815 0.98522 1.21238 0.91855 1.00651 1.00537 1.19885 0.94558 0.94287 0.98722 1.20702 0.95751 0.99592 0.95976 1.20700 0.87516 0.92561 0.95582 1.42710 1.32940 1.60893 1.03968 1.19040 1.07623 1.24370 0.86329 0.93021 1.25584 0.98873 1.00482 1.00579 1.69900 1.24976 1.41758 1.26851 0.85333 0.78845 0.77294 0.79850 1.20174 1.22134 1.17170 1.21236 0.99623 0.92885 1.00554 1.21202 0.91458 1.00455 0.98574 1.24099 0.95333 0.95557 0.98846 1.77263 1.02688 1.10112 1.26529 0.89250 0.87128 0.89695 0.78177 0.85749 0.85377 0.74813 0.91390 0.91590 0.84326 0.85316 0.90159 0.90092 0.96194 0.96246 0.79812 0.93230 0.85356 0.84478 0.79072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 11.47 127.77 1.47 2.11 16 2 N -0.38 -6.03 4.01 -369.57 -1.48 -7.52 16 3 C 0.06 0.85 11.40 83.54 0.95 1.80 16 4 C -0.24 -3.44 4.59 -20.14 -0.09 -3.53 16 5 C -0.05 -0.40 6.19 29.10 0.18 -0.22 16 6 C 0.51 7.74 7.82 87.66 0.69 8.43 16 7 O -0.58 -15.02 16.03 -3.03 -0.05 -15.07 16 8 N -0.72 -8.34 5.55 -466.77 -2.59 -10.93 16 9 C 0.17 2.63 5.80 85.63 0.50 3.13 16 10 C -0.11 -1.84 5.25 -19.86 -0.10 -1.95 16 11 C -0.10 -1.67 9.70 22.27 0.22 -1.46 16 12 C -0.12 -2.60 9.70 22.27 0.22 -2.39 16 13 C -0.07 -1.73 5.13 -19.87 -0.10 -1.84 16 14 C -0.08 -2.27 5.46 29.85 0.16 -2.11 16 15 C 0.16 6.18 6.24 86.38 0.54 6.72 16 16 N -0.76 -35.66 5.41 -343.43 -1.86 -37.51 16 17 C -0.24 -14.13 10.47 84.03 0.88 -13.25 16 18 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 19 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 20 N -0.98 -63.62 13.97 21.65 0.30 -63.32 16 21 Si 0.96 44.92 27.73 68.60 1.90 46.82 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 24 H -0.25 -10.25 6.52 99.48 0.65 -9.60 16 25 C -0.12 -2.63 9.70 22.27 0.22 -2.42 16 26 C -0.10 -1.72 9.70 22.27 0.22 -1.51 16 27 C 0.05 0.84 11.96 85.24 1.02 1.86 16 28 N -0.34 -7.34 12.58 -57.03 -0.72 -8.06 16 29 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.20 1.13 8.06 -2.91 -0.02 1.11 16 33 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.42 2.73 8.46 -92.71 -0.78 1.94 16 36 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 37 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 38 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.13 2.52 8.06 -2.91 -0.02 2.49 16 40 H 0.08 2.09 8.09 -2.39 -0.02 2.07 16 41 H 0.08 2.09 8.09 -2.39 -0.02 2.07 16 42 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.37 16.07 5.53 -92.71 -0.51 15.56 16 45 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 46 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 47 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 48 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -84.66 410.16 2.54 -82.11 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -0.38 Total: 23.41 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 7.41 Total: -9.94 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -6.34 Total: -127.34 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.05 Total: -15.07 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.90 Total: 46.82 kcal Total: -84.66 2.54 -82.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690793436.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.258 kcal (2) G-P(sol) polarization free energy of solvation -84.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds