Wall clock time and date at job start Wed Apr 1 2020 04:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36945 * 120.00026 * 2 1 4 4 H 1.08002 * 119.99803 * 204.22145 * 3 2 1 5 5 C 1.38808 * 119.99684 * 24.22303 * 3 2 1 6 6 N 1.31619 * 120.00249 * 9.97285 * 5 3 2 7 7 Si 1.86806 * 119.99798 * 189.97227 * 5 3 2 8 8 H 1.48501 * 109.47011 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.46778 * 119.99803 * 7 5 3 10 10 H 1.48499 * 109.47291 * 239.99892 * 7 5 3 11 11 C 1.46500 * 120.00414 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47097 * 89.99965 * 11 2 1 13 13 H 1.08999 * 110.88218 * 308.88432 * 12 11 2 14 14 C 1.55153 * 111.00085 * 72.80817 * 12 11 2 15 15 C 1.54327 * 102.94086 * 153.57605 * 14 12 11 16 16 N 1.47022 * 107.26957 * 337.80918 * 15 14 12 17 17 C 1.34776 * 125.64593 * 178.90569 * 16 15 14 18 18 O 1.21731 * 119.99927 * 184.89670 * 17 16 15 19 19 C 1.46423 * 120.00269 * 4.89609 * 17 16 15 20 20 C 1.40118 * 126.85398 * 92.78889 * 19 17 16 21 21 C 1.40056 * 136.36842 * 0.77400 * 20 19 17 22 22 C 1.36071 * 119.47118 * 179.58785 * 21 20 19 23 23 C 1.39485 * 121.56789 * 359.70933 * 22 21 20 24 24 C 1.35821 * 121.84045 * 0.02562 * 23 22 21 25 25 C 1.40926 * 119.54198 * 0.02562 * 24 23 22 26 26 N 1.32147 * 135.41479 * 180.02562 * 25 24 23 27 27 N 1.28454 * 111.38797 * 179.97438 * 26 25 24 28 28 C 1.46502 * 124.15434 * 180.02562 * 27 26 25 29 29 C 1.47422 * 108.70412 * 358.93654 * 16 15 14 30 30 H 1.09008 * 109.47396 * 265.88732 * 1 2 3 31 31 H 1.08999 * 109.47417 * 145.88503 * 1 2 3 32 32 H 1.09001 * 109.47429 * 25.88186 * 1 2 3 33 33 H 0.97003 * 119.99970 * 179.97438 * 6 5 3 34 34 H 1.08999 * 109.47391 * 210.00215 * 11 2 1 35 35 H 1.09004 * 109.46991 * 330.00296 * 11 2 1 36 36 H 1.08999 * 110.71950 * 271.93378 * 14 12 11 37 37 H 1.08997 * 110.72236 * 35.21524 * 14 12 11 38 38 H 1.08997 * 109.88235 * 218.39004 * 15 14 12 39 39 H 1.09005 * 109.88054 * 97.22051 * 15 14 12 40 40 H 1.08003 * 120.26075 * 359.30175 * 21 20 19 41 41 H 1.07999 * 119.21260 * 179.73021 * 22 21 20 42 42 H 1.07997 * 119.07563 * 180.02562 * 23 22 21 43 43 H 1.08004 * 120.22483 * 179.97438 * 24 23 22 44 44 H 1.08998 * 109.46860 * 274.61239 * 28 27 26 45 45 H 1.09000 * 109.47496 * 34.61270 * 28 27 26 46 46 H 1.08998 * 109.46952 * 154.61049 * 28 27 26 47 47 H 1.08996 * 110.36686 * 265.29497 * 29 16 15 48 48 H 1.09003 * 110.36833 * 142.97336 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1583 1.2271 -0.3837 5 6 1.5472 2.3351 0.4932 6 7 0.4023 2.2534 1.1374 7 14 2.3614 3.9976 0.2428 8 1 3.6308 3.8192 -0.5070 9 1 1.4520 4.8830 -0.5282 10 1 2.6483 4.6124 1.5637 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 1 1.5294 -1.6978 -2.0211 14 6 3.5417 -0.8303 -2.1091 15 6 4.1346 -1.7677 -3.1821 16 7 3.8376 -3.1471 -2.7689 17 6 4.1702 -4.2604 -3.4517 18 8 3.7951 -5.3500 -3.0592 19 6 4.9828 -4.1595 -4.6655 20 6 6.3780 -4.2548 -4.7532 21 6 7.4374 -4.4691 -3.8625 22 6 8.7127 -4.5066 -4.3357 23 6 8.9934 -4.3422 -5.6920 24 6 8.0112 -4.1365 -6.6073 25 6 6.6676 -4.0854 -6.1850 26 7 5.5004 -3.9092 -6.7791 27 7 4.5340 -3.9473 -5.9337 28 6 3.1224 -3.7846 -6.2903 29 6 3.1150 -3.1106 -1.4844 30 1 -0.3634 -0.0737 1.0251 31 1 -0.3634 -0.8508 -0.5764 32 1 -0.3634 0.9246 -0.4486 33 1 -0.0185 3.0565 1.4824 34 1 3.1499 -1.1381 0.5144 35 1 1.6084 -2.0282 0.5147 36 1 3.0958 0.0508 -2.5707 37 1 4.3034 -0.5435 -1.3841 38 1 5.2132 -1.6237 -3.2451 39 1 3.6740 -1.5630 -4.1486 40 1 7.2440 -4.5990 -2.8079 41 1 9.5268 -4.6678 -3.6445 42 1 10.0205 -4.3797 -6.0237 43 1 8.2582 -4.0121 -7.6513 44 1 2.8751 -2.7234 -6.3193 45 1 2.9418 -4.2267 -7.2701 46 1 2.5002 -4.2826 -5.5468 47 1 3.8115 -3.2260 -0.6540 48 1 2.3549 -3.8912 -1.4544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691990176.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:45 Heat of formation + Delta-G solvation = 79.244327 kcal Electronic energy + Delta-G solvation = -29861.653519 eV Core-core repulsion = 25918.584650 eV Total energy + Delta-G solvation = -3943.068869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -43.58733 -41.07207 -38.98902 -38.67726 -37.12307 -34.16934 -33.75133 -33.04035 -32.15167 -30.65283 -30.33487 -28.55485 -27.93780 -27.25204 -25.12273 -24.06649 -23.36123 -23.15808 -22.51949 -21.12441 -20.15154 -18.91939 -18.72995 -18.48402 -17.82694 -17.23062 -17.13357 -16.91045 -16.63200 -15.84580 -15.47830 -15.23559 -15.13571 -15.07726 -14.66850 -14.63681 -14.49730 -14.24257 -13.94900 -13.92744 -13.71886 -13.37903 -13.02675 -12.83224 -12.81036 -12.72834 -12.67426 -12.65911 -12.37198 -12.15132 -11.95395 -11.82586 -11.60674 -11.53906 -11.39726 -11.37670 -11.22872 -10.56699 -9.90199 -9.69479 -8.79963 -8.69149 -7.79282 -5.26231 -0.50192 0.61504 0.80241 1.26047 1.39979 1.48546 1.51066 1.59631 1.85453 2.54347 2.82440 3.03405 3.05978 3.36841 3.52472 3.64818 3.82685 3.89007 3.94556 4.07014 4.09327 4.13895 4.21594 4.23107 4.34885 4.38695 4.41328 4.55096 4.55639 4.63161 4.81003 4.81840 4.83029 4.90730 4.95610 5.05465 5.08737 5.13139 5.27596 5.32662 5.40014 5.48485 5.51246 5.54820 5.60907 5.68746 5.77031 5.97497 6.16744 6.40499 6.70061 6.78218 7.21255 7.92815 8.37931 9.26583 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.002629 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.139777 B =10647.635100 C =11233.917830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.615 5.615 3 C -0.245 4.245 4 H 0.081 0.919 5 C -0.059 4.059 6 N -0.944 5.944 7 Si 0.961 3.039 8 H -0.261 1.261 9 H -0.296 1.296 10 H -0.298 1.298 11 C 0.160 3.840 12 C -0.102 4.102 13 H 0.073 0.927 14 C -0.106 4.106 15 C 0.108 3.892 16 N -0.594 5.594 17 C 0.613 3.387 18 O -0.560 6.560 19 C -0.035 4.035 20 C -0.142 4.142 21 C -0.092 4.092 22 C -0.116 4.116 23 C -0.093 4.093 24 C -0.089 4.089 25 C 0.037 3.963 26 N -0.299 5.299 27 N -0.216 5.216 28 C 0.065 3.935 29 C 0.115 3.885 30 H -0.009 1.009 31 H 0.023 0.977 32 H 0.031 0.969 33 H 0.245 0.755 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.154 0.846 42 H 0.164 0.836 43 H 0.149 0.851 44 H 0.114 0.886 45 H 0.125 0.875 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.552 -12.850 -15.482 24.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.338 5.338 3 C -0.375 4.375 4 H 0.099 0.901 5 C -0.253 4.253 6 N -0.592 5.592 7 Si 0.791 3.209 8 H -0.185 1.185 9 H -0.224 1.224 10 H -0.226 1.226 11 C 0.034 3.966 12 C -0.124 4.124 13 H 0.092 0.908 14 C -0.144 4.144 15 C -0.014 4.014 16 N -0.326 5.326 17 C 0.399 3.601 18 O -0.437 6.437 19 C -0.172 4.172 20 C -0.151 4.151 21 C -0.112 4.112 22 C -0.135 4.135 23 C -0.115 4.115 24 C -0.110 4.110 25 C -0.107 4.107 26 N -0.137 5.137 27 N 0.001 4.999 28 C -0.073 4.073 29 C -0.007 4.007 30 H 0.009 0.991 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.140 0.860 41 H 0.172 0.828 42 H 0.182 0.818 43 H 0.166 0.834 44 H 0.133 0.867 45 H 0.144 0.856 46 H 0.117 0.883 47 H 0.099 0.901 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.586 -13.146 -16.379 24.484 hybrid contribution -0.057 1.004 1.008 1.424 sum 12.528 -12.142 -15.371 23.252 Atomic orbital electron populations 1.20528 0.83187 0.96990 0.96273 1.44089 1.01857 1.01694 1.86111 1.19623 0.99026 0.86450 1.32379 0.90101 1.25792 0.98581 1.01893 0.99014 1.70232 1.19988 1.27502 1.41500 0.85277 0.78303 0.80564 0.76795 1.18510 1.22353 1.22559 1.20753 0.96024 0.87010 0.92842 1.22864 0.97771 0.92255 0.99517 0.90842 1.22499 0.97739 0.97256 0.96920 1.22171 1.00856 0.79588 0.98829 1.48524 1.54951 1.06072 1.23069 1.16361 0.78645 0.83060 0.82072 1.90862 1.54965 1.27729 1.70184 1.20820 0.93899 1.15262 0.87192 1.19655 0.90855 1.08473 0.96115 1.20266 0.91783 1.00675 0.98481 1.21086 0.96059 0.99599 0.96726 1.21061 1.00447 0.97670 0.92317 1.20266 0.87010 1.02219 1.01458 1.21068 0.93908 1.04946 0.90731 1.73377 0.95624 1.25351 1.19322 1.45989 1.09040 1.42676 1.02235 1.22759 0.72478 1.06416 1.05667 1.22375 0.95785 0.98199 0.84381 0.99070 0.95861 0.95041 0.94579 0.93054 0.93324 0.90345 0.90755 0.90811 0.90861 0.86001 0.82832 0.81818 0.83380 0.86746 0.85644 0.88337 0.90125 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.28 8.99 127.77 1.15 9.43 16 2 N -0.61 -28.26 2.91 -726.94 -2.11 -30.37 16 3 C -0.24 -12.27 9.17 84.03 0.77 -11.50 16 4 H 0.08 3.82 7.05 -2.91 -0.02 3.80 16 5 C -0.06 -3.13 5.10 84.86 0.43 -2.70 16 6 N -0.94 -54.49 10.67 21.65 0.23 -54.26 16 7 Si 0.96 43.19 29.57 68.60 2.03 45.22 16 8 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 9 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 10 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 11 C 0.16 5.71 5.21 86.38 0.45 6.16 16 12 C -0.10 -2.95 3.26 -9.40 -0.03 -2.98 16 13 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 14 C -0.11 -2.89 5.27 31.78 0.17 -2.72 16 15 C 0.11 2.50 6.47 86.73 0.56 3.06 16 16 N -0.59 -15.28 3.33 -816.76 -2.72 -18.00 16 17 C 0.61 17.61 6.88 86.37 0.59 18.21 16 18 O -0.56 -19.62 17.34 -4.45 -0.08 -19.70 16 19 C -0.04 -0.96 5.88 41.06 0.24 -0.71 16 20 C -0.14 -3.77 6.42 -20.07 -0.13 -3.90 16 21 C -0.09 -2.05 10.06 22.21 0.22 -1.83 16 22 C -0.12 -1.88 9.92 22.07 0.22 -1.67 16 23 C -0.09 -1.34 9.89 22.01 0.22 -1.12 16 24 C -0.09 -1.65 10.09 22.37 0.23 -1.42 16 25 C 0.04 0.94 7.53 42.07 0.32 1.25 16 26 N -0.30 -7.67 11.88 -48.86 -0.58 -8.25 16 27 N -0.22 -5.11 3.71 -355.62 -1.32 -6.43 16 28 C 0.07 0.99 11.12 127.77 1.42 2.41 16 29 C 0.11 2.97 6.40 86.85 0.56 3.53 16 30 H -0.01 -0.47 7.83 -2.38 -0.02 -0.49 16 31 H 0.02 0.93 8.10 -2.39 -0.02 0.91 16 32 H 0.03 1.63 6.70 -2.39 -0.02 1.61 16 33 H 0.24 13.85 8.31 -92.71 -0.77 13.08 16 34 H 0.05 1.83 7.87 -2.39 -0.02 1.81 16 35 H 0.05 1.65 8.07 -2.39 -0.02 1.63 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.07 2.10 7.76 -2.39 -0.02 2.08 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.12 2.62 8.06 -2.91 -0.02 2.59 16 41 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 43 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 44 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.10 1.52 7.56 -2.39 -0.02 1.50 16 47 H 0.08 2.00 8.04 -2.39 -0.02 1.98 16 48 H 0.08 2.08 7.99 -2.39 -0.02 2.06 16 Total: -1.00 -70.35 394.74 3.79 -66.56 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.95 Total: 11.72 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 7.39 Total: 13.49 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -6.50 Total: -117.30 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.08 Total: -19.70 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -70.35 3.79 -66.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691990176.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.808 kcal (2) G-P(sol) polarization free energy of solvation -70.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds