Wall clock time and date at job start Wed Apr 1 2020 04:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36931 * 120.00027 * 2 1 4 4 H 1.08002 * 120.00067 * 204.22169 * 3 2 1 5 5 C 1.38814 * 120.00172 * 24.22501 * 3 2 1 6 6 N 1.31618 * 119.99526 * 9.96936 * 5 3 2 7 7 Si 1.86800 * 120.00182 * 189.97189 * 5 3 2 8 8 H 1.48504 * 109.46907 * 359.97438 * 7 5 3 9 9 H 1.48491 * 109.47232 * 119.99734 * 7 5 3 10 10 H 1.48504 * 109.46981 * 240.00012 * 7 5 3 11 11 C 1.46504 * 119.99750 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.46973 * 90.00308 * 11 2 1 13 13 H 1.08992 * 110.89071 * 51.11390 * 12 11 2 14 14 C 1.55158 * 111.03344 * 287.21277 * 12 11 2 15 15 C 1.54312 * 102.86289 * 206.21734 * 14 12 11 16 16 N 1.47028 * 107.27607 * 22.52356 * 15 14 12 17 17 C 1.34771 * 125.64876 * 180.96617 * 16 15 14 18 18 O 1.21737 * 119.99902 * 184.61365 * 17 16 15 19 19 C 1.46421 * 120.00093 * 4.34346 * 17 16 15 20 20 C 1.40108 * 126.85949 * 93.43653 * 19 17 16 21 21 C 1.40061 * 136.36538 * 0.02562 * 20 19 17 22 22 C 1.36075 * 119.47043 * 180.02562 * 21 20 19 23 23 C 1.39481 * 121.57036 * 0.02562 * 22 21 20 24 24 C 1.35825 * 121.84136 * 359.95762 * 23 22 21 25 25 C 1.40938 * 119.54054 * 0.04367 * 24 23 22 26 26 N 1.32140 * 135.41776 * 179.97438 * 25 24 23 27 27 N 1.28449 * 111.39148 * 179.71033 * 26 25 24 28 28 C 1.46500 * 124.16087 * 180.31804 * 27 26 25 29 29 C 1.47427 * 108.70198 * 0.70813 * 16 15 14 30 30 H 1.09007 * 109.46925 * 266.12573 * 1 2 3 31 31 H 1.09000 * 109.47143 * 26.12607 * 1 2 3 32 32 H 1.09002 * 109.47436 * 146.12954 * 1 2 3 33 33 H 0.97002 * 119.99157 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.47525 * 329.99895 * 11 2 1 35 35 H 1.09000 * 109.46689 * 209.99570 * 11 2 1 36 36 H 1.09004 * 110.71854 * 324.76862 * 14 12 11 37 37 H 1.08996 * 110.72621 * 87.86948 * 14 12 11 38 38 H 1.08998 * 109.98682 * 263.05146 * 15 14 12 39 39 H 1.09001 * 109.77870 * 141.88098 * 15 14 12 40 40 H 1.08002 * 120.26722 * 0.02562 * 21 20 19 41 41 H 1.08001 * 119.21488 * 179.97438 * 22 21 20 42 42 H 1.07997 * 119.07960 * 179.97438 * 23 22 21 43 43 H 1.07994 * 120.22860 * 180.02562 * 24 23 22 44 44 H 1.08998 * 109.47543 * 274.84312 * 28 27 26 45 45 H 1.09006 * 109.46975 * 34.84249 * 28 27 26 46 46 H 1.09002 * 109.47285 * 154.83704 * 28 27 26 47 47 H 1.08994 * 110.36743 * 94.93476 * 29 16 15 48 48 H 1.08994 * 110.36597 * 217.15005 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1584 1.2270 -0.3837 5 6 1.5473 2.3351 0.4933 6 7 0.4024 2.2534 1.1374 7 14 2.3615 3.9976 0.2428 8 1 3.6315 3.8189 -0.5059 9 1 1.4523 4.8830 -0.5281 10 1 2.6485 4.6122 1.5639 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 1 2.9024 -0.9035 -2.0224 14 6 1.1453 -2.2119 -2.1115 15 6 1.6630 -3.1887 -3.1881 16 7 3.0038 -3.6260 -2.7724 17 6 3.8018 -4.4700 -3.4559 18 8 4.8610 -4.8296 -2.9755 19 6 3.3920 -4.9593 -4.7738 20 6 3.7230 -4.4038 -6.0167 21 6 4.4720 -3.3112 -6.4716 22 6 4.5707 -3.0773 -7.8085 23 6 3.9419 -3.9007 -8.7423 24 6 3.2017 -4.9757 -8.3662 25 6 3.0580 -5.2756 -6.9966 26 7 2.4343 -6.2076 -6.2977 27 7 2.6172 -6.0482 -5.0363 28 6 2.0577 -6.9272 -4.0064 29 6 3.3333 -2.9833 -1.4872 30 1 -0.3633 -0.0694 1.0254 31 1 -0.3633 0.9227 -0.4525 32 1 -0.3634 -0.8533 -0.5727 33 1 -0.0186 3.0565 1.4817 34 1 1.6084 -2.0287 0.5129 35 1 3.1499 -1.1386 0.5133 36 1 0.5160 -2.7290 -1.3872 37 1 0.6037 -1.3843 -2.5695 38 1 1.7203 -2.6840 -4.1525 39 1 0.9972 -4.0490 -3.2565 40 1 4.9674 -2.6596 -5.7670 41 1 5.1490 -2.2334 -8.1547 42 1 4.0467 -3.6775 -9.7937 43 1 2.7264 -5.5961 -9.1115 44 1 1.0445 -6.6056 -3.7655 45 1 2.0352 -7.9522 -4.3766 46 1 2.6772 -6.8779 -3.1109 47 1 3.0849 -3.6451 -0.6575 48 1 4.3898 -2.7172 -1.4560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691990177.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:56 Heat of formation + Delta-G solvation = 97.730254 kcal Electronic energy + Delta-G solvation = -29834.121504 eV Core-core repulsion = 25891.854245 eV Total energy + Delta-G solvation = -3942.267259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 3.55 seconds Orbital eigenvalues (eV) -42.70571 -39.93832 -37.92663 -37.69716 -35.43635 -33.13902 -32.57243 -31.99489 -30.57745 -29.71842 -29.22476 -27.80316 -26.15148 -25.69221 -23.97165 -23.19525 -22.54056 -21.67600 -21.19164 -19.92269 -19.21050 -17.87537 -17.69816 -16.82745 -16.65640 -16.58084 -15.98508 -15.80002 -14.99124 -14.69002 -14.36269 -14.23899 -14.00347 -13.70774 -13.63169 -13.49513 -13.34552 -13.28171 -12.89194 -12.72993 -12.22596 -12.05113 -12.01366 -11.93980 -11.91785 -11.47048 -11.14368 -10.94629 -10.80273 -10.55409 -10.52586 -10.43257 -10.39620 -10.23565 -10.09049 -9.92705 -9.85390 -8.87921 -8.79992 -8.55698 -7.93286 -6.76712 -5.78189 -3.24383 0.34212 1.45817 1.74124 2.15399 2.37593 2.86057 3.34949 3.42787 3.44333 3.63836 3.84493 4.04779 4.44732 4.54611 4.61794 4.67869 4.71327 4.86555 4.87961 4.92057 4.96589 5.05133 5.17475 5.28399 5.33465 5.41333 5.42191 5.50734 5.61803 5.79812 5.80710 5.84477 5.96664 6.02693 6.15283 6.16745 6.24765 6.30946 6.37104 6.39681 6.41198 6.64831 6.71930 6.75766 6.82386 7.26358 7.35323 7.66283 7.67612 7.78012 7.81316 8.37898 9.20648 9.83030 10.32008 11.28160 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.014730 B = 0.002649 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.447084 B =10569.136233 C =11477.842451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.599 5.599 3 C -0.255 4.255 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.163 3.837 12 C -0.117 4.117 13 H 0.086 0.914 14 C -0.116 4.116 15 C 0.099 3.901 16 N -0.599 5.599 17 C 0.604 3.396 18 O -0.523 6.523 19 C -0.011 4.011 20 C -0.126 4.126 21 C -0.060 4.060 22 C -0.129 4.129 23 C -0.098 4.098 24 C -0.080 4.080 25 C 0.060 3.940 26 N -0.289 5.289 27 N -0.220 5.220 28 C 0.076 3.924 29 C 0.109 3.891 30 H 0.015 0.985 31 H 0.057 0.943 32 H -0.004 1.004 33 H 0.252 0.748 34 H 0.039 0.961 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.099 0.901 47 H 0.072 0.928 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.133 -16.568 -14.876 22.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.321 5.321 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.554 5.554 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.034 3.966 12 C -0.140 4.140 13 H 0.104 0.896 14 C -0.154 4.154 15 C -0.023 4.023 16 N -0.332 5.332 17 C 0.388 3.612 18 O -0.398 6.398 19 C -0.147 4.147 20 C -0.135 4.135 21 C -0.081 4.081 22 C -0.148 4.148 23 C -0.120 4.120 24 C -0.101 4.101 25 C -0.085 4.085 26 N -0.126 5.126 27 N -0.003 5.003 28 C -0.064 4.064 29 C -0.013 4.013 30 H 0.034 0.966 31 H 0.076 0.924 32 H 0.014 0.986 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.114 0.886 45 H 0.124 0.876 46 H 0.118 0.882 47 H 0.090 0.910 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.850 -17.766 -14.544 23.034 hybrid contribution 0.693 1.589 -0.018 1.734 sum 2.544 -16.176 -14.562 21.913 Atomic orbital electron populations 1.20836 0.82634 0.97256 0.97628 1.43842 1.01822 1.00472 1.85946 1.19237 0.98875 0.85883 1.34454 0.91416 1.25053 0.97724 0.98689 0.98130 1.70069 1.18354 1.27347 1.39588 0.86193 0.78756 0.84242 0.77413 1.20275 1.21637 1.21700 1.20605 0.96458 0.88781 0.90748 1.23266 0.93710 0.94924 1.02062 0.89590 1.22642 0.98214 0.97863 0.96640 1.22183 0.82449 0.98141 0.99564 1.48570 1.17338 1.44488 1.22809 1.16332 0.83670 0.79274 0.81907 1.90896 1.22893 1.57935 1.68085 1.20959 1.04183 0.94633 0.94971 1.19329 1.04288 0.99700 0.90161 1.20106 0.96989 0.94947 0.96020 1.20671 1.01241 1.00438 0.92488 1.20629 0.97022 0.94542 0.99791 1.19870 1.00808 0.98467 0.90909 1.20584 0.99051 0.93734 0.95092 1.73415 1.24877 1.25165 0.89115 1.45681 1.31234 1.18159 1.05178 1.22429 1.00684 0.94783 0.88533 1.22484 1.00882 0.94212 0.83679 0.96629 0.92418 0.98591 0.93774 0.94270 0.93050 0.90717 0.89567 0.91314 0.92217 0.85817 0.85618 0.85435 0.85304 0.88583 0.87556 0.88224 0.91000 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.71 8.84 59.85 0.53 4.24 16 2 N -0.60 -14.02 2.89 -181.11 -0.52 -14.55 16 3 C -0.25 -6.69 9.65 -15.06 -0.15 -6.84 16 4 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 5 C 0.00 0.06 5.10 -17.43 -0.09 -0.03 16 6 N -0.91 -25.80 10.67 55.49 0.59 -25.21 16 7 Si 0.90 21.36 29.57 -169.99 -5.03 16.34 16 8 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 C 0.16 3.00 5.19 -4.04 -0.02 2.98 16 12 C -0.12 -1.80 3.25 -88.47 -0.29 -2.09 16 13 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 14 C -0.12 -1.55 5.01 -24.90 -0.12 -1.67 16 15 C 0.10 1.18 6.46 -3.07 -0.02 1.16 16 16 N -0.60 -7.96 3.33 -172.16 -0.57 -8.53 16 17 C 0.60 8.78 6.88 -12.97 -0.09 8.69 16 18 O -0.52 -9.18 17.41 5.16 0.09 -9.09 16 19 C -0.01 -0.15 5.88 -81.93 -0.48 -0.63 16 20 C -0.13 -1.73 6.41 -104.94 -0.67 -2.40 16 21 C -0.06 -0.74 10.06 -39.68 -0.40 -1.14 16 22 C -0.13 -1.29 9.92 -39.90 -0.40 -1.68 16 23 C -0.10 -0.89 9.89 -39.98 -0.40 -1.28 16 24 C -0.08 -0.83 10.09 -39.42 -0.40 -1.23 16 25 C 0.06 0.79 7.53 -83.14 -0.63 0.16 16 26 N -0.29 -3.76 11.88 33.21 0.39 -3.37 16 27 N -0.22 -2.61 3.71 -63.75 -0.24 -2.84 16 28 C 0.08 0.56 11.12 59.85 0.67 1.23 16 29 C 0.11 1.50 6.36 -2.53 -0.02 1.48 16 30 H 0.02 0.39 7.82 -51.93 -0.41 -0.02 16 31 H 0.06 1.47 6.72 -51.93 -0.35 1.12 16 32 H 0.00 -0.08 6.33 -51.93 -0.33 -0.41 16 33 H 0.25 6.95 8.31 -40.82 -0.34 6.62 16 34 H 0.04 0.67 7.90 -51.93 -0.41 0.26 16 35 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 36 H 0.07 0.96 7.62 -51.93 -0.40 0.56 16 37 H 0.09 1.25 7.99 -51.93 -0.41 0.83 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.10 0.72 7.56 -51.93 -0.39 0.33 16 47 H 0.07 0.91 8.04 -51.93 -0.42 0.50 16 48 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 LS Contribution 393.62 15.07 5.93 5.93 Total: -1.00 -32.86 393.62 -9.62 -42.49 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -7.30 Total: -2.10 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -2.97 Total: 0.94 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.35 Total: -54.50 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.86 -9.62 -42.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691990177.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.217 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.55 seconds