Wall clock time and date at job start Wed Apr 1 2020 04:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36931 * 120.00027 * 2 1 4 4 H 1.08002 * 120.00067 * 204.22169 * 3 2 1 5 5 C 1.38814 * 120.00172 * 24.22501 * 3 2 1 6 6 N 1.31618 * 119.99526 * 9.96936 * 5 3 2 7 7 Si 1.86800 * 120.00182 * 189.97189 * 5 3 2 8 8 H 1.48504 * 109.46907 * 359.97438 * 7 5 3 9 9 H 1.48491 * 109.47232 * 119.99734 * 7 5 3 10 10 H 1.48504 * 109.46981 * 240.00012 * 7 5 3 11 11 C 1.46504 * 119.99750 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.46973 * 90.00308 * 11 2 1 13 13 H 1.08992 * 110.89071 * 51.11390 * 12 11 2 14 14 C 1.55158 * 111.03344 * 287.21277 * 12 11 2 15 15 C 1.54312 * 102.86289 * 206.21734 * 14 12 11 16 16 N 1.47028 * 107.27607 * 22.52356 * 15 14 12 17 17 C 1.34771 * 125.64876 * 180.96617 * 16 15 14 18 18 O 1.21737 * 119.99902 * 184.61365 * 17 16 15 19 19 C 1.46421 * 120.00093 * 4.34346 * 17 16 15 20 20 C 1.40108 * 126.85949 * 93.43653 * 19 17 16 21 21 C 1.40061 * 136.36538 * 0.02562 * 20 19 17 22 22 C 1.36075 * 119.47043 * 180.02562 * 21 20 19 23 23 C 1.39481 * 121.57036 * 0.02562 * 22 21 20 24 24 C 1.35825 * 121.84136 * 359.95762 * 23 22 21 25 25 C 1.40938 * 119.54054 * 0.04367 * 24 23 22 26 26 N 1.32140 * 135.41776 * 179.97438 * 25 24 23 27 27 N 1.28449 * 111.39148 * 179.71033 * 26 25 24 28 28 C 1.46500 * 124.16087 * 180.31804 * 27 26 25 29 29 C 1.47427 * 108.70198 * 0.70813 * 16 15 14 30 30 H 1.09007 * 109.46925 * 266.12573 * 1 2 3 31 31 H 1.09000 * 109.47143 * 26.12607 * 1 2 3 32 32 H 1.09002 * 109.47436 * 146.12954 * 1 2 3 33 33 H 0.97002 * 119.99157 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.47525 * 329.99895 * 11 2 1 35 35 H 1.09000 * 109.46689 * 209.99570 * 11 2 1 36 36 H 1.09004 * 110.71854 * 324.76862 * 14 12 11 37 37 H 1.08996 * 110.72621 * 87.86948 * 14 12 11 38 38 H 1.08998 * 109.98682 * 263.05146 * 15 14 12 39 39 H 1.09001 * 109.77870 * 141.88098 * 15 14 12 40 40 H 1.08002 * 120.26722 * 0.02562 * 21 20 19 41 41 H 1.08001 * 119.21488 * 179.97438 * 22 21 20 42 42 H 1.07997 * 119.07960 * 179.97438 * 23 22 21 43 43 H 1.07994 * 120.22860 * 180.02562 * 24 23 22 44 44 H 1.08998 * 109.47543 * 274.84312 * 28 27 26 45 45 H 1.09006 * 109.46975 * 34.84249 * 28 27 26 46 46 H 1.09002 * 109.47285 * 154.83704 * 28 27 26 47 47 H 1.08994 * 110.36743 * 94.93476 * 29 16 15 48 48 H 1.08994 * 110.36597 * 217.15005 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1584 1.2270 -0.3837 5 6 1.5473 2.3351 0.4933 6 7 0.4024 2.2534 1.1374 7 14 2.3615 3.9976 0.2428 8 1 3.6315 3.8189 -0.5059 9 1 1.4523 4.8830 -0.5281 10 1 2.6485 4.6122 1.5639 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 1 2.9024 -0.9035 -2.0224 14 6 1.1453 -2.2119 -2.1115 15 6 1.6630 -3.1887 -3.1881 16 7 3.0038 -3.6260 -2.7724 17 6 3.8018 -4.4700 -3.4559 18 8 4.8610 -4.8296 -2.9755 19 6 3.3920 -4.9593 -4.7738 20 6 3.7230 -4.4038 -6.0167 21 6 4.4720 -3.3112 -6.4716 22 6 4.5707 -3.0773 -7.8085 23 6 3.9419 -3.9007 -8.7423 24 6 3.2017 -4.9757 -8.3662 25 6 3.0580 -5.2756 -6.9966 26 7 2.4343 -6.2076 -6.2977 27 7 2.6172 -6.0482 -5.0363 28 6 2.0577 -6.9272 -4.0064 29 6 3.3333 -2.9833 -1.4872 30 1 -0.3633 -0.0694 1.0254 31 1 -0.3633 0.9227 -0.4525 32 1 -0.3634 -0.8533 -0.5727 33 1 -0.0186 3.0565 1.4817 34 1 1.6084 -2.0287 0.5129 35 1 3.1499 -1.1386 0.5133 36 1 0.5160 -2.7290 -1.3872 37 1 0.6037 -1.3843 -2.5695 38 1 1.7203 -2.6840 -4.1525 39 1 0.9972 -4.0490 -3.2565 40 1 4.9674 -2.6596 -5.7670 41 1 5.1490 -2.2334 -8.1547 42 1 4.0467 -3.6775 -9.7937 43 1 2.7264 -5.5961 -9.1115 44 1 1.0445 -6.6056 -3.7655 45 1 2.0352 -7.9522 -4.3766 46 1 2.6772 -6.8779 -3.1109 47 1 3.0849 -3.6451 -0.6575 48 1 4.3898 -2.7172 -1.4560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691990177.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:53 Heat of formation + Delta-G solvation = 78.913077 kcal Electronic energy + Delta-G solvation = -29834.937478 eV Core-core repulsion = 25891.854245 eV Total energy + Delta-G solvation = -3943.083233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -43.58918 -41.07906 -39.00936 -38.68546 -37.12965 -34.19836 -33.76258 -33.04374 -32.10482 -30.67800 -30.39782 -28.54466 -27.92959 -27.27195 -25.17426 -24.09932 -23.36532 -22.95844 -22.58597 -21.25651 -20.19069 -18.93307 -18.52849 -18.49317 -17.77732 -17.62610 -17.03918 -16.88095 -16.63408 -15.77724 -15.45662 -15.43267 -15.17084 -15.05311 -14.72167 -14.67279 -14.37250 -14.22007 -13.92861 -13.88786 -13.68424 -13.50179 -12.99608 -12.82113 -12.80894 -12.73690 -12.67599 -12.60562 -12.51421 -12.20596 -11.96002 -11.78070 -11.65151 -11.55111 -11.41266 -11.38275 -11.23162 -10.58945 -9.90925 -9.69644 -8.80659 -8.70168 -7.82307 -5.29323 -0.51334 0.60515 0.80742 1.24774 1.38150 1.46290 1.48682 1.57789 1.86682 2.52009 2.81069 3.02808 3.05943 3.32974 3.53578 3.61099 3.80268 3.87939 3.94830 4.08436 4.10447 4.13588 4.20286 4.24529 4.35088 4.37765 4.42737 4.54285 4.54765 4.60640 4.79294 4.80158 4.80930 4.90322 4.97162 5.03795 5.08538 5.14444 5.25090 5.31153 5.38626 5.47336 5.51114 5.54469 5.59937 5.65149 5.77987 5.96037 6.16630 6.38150 6.69641 6.77528 7.19818 7.92250 8.34407 9.22153 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.014730 B = 0.002649 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.447084 B =10569.136233 C =11477.842451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.615 5.615 3 C -0.256 4.256 4 H 0.068 0.932 5 C -0.053 4.053 6 N -0.939 5.939 7 Si 0.963 3.037 8 H -0.268 1.268 9 H -0.292 1.292 10 H -0.294 1.294 11 C 0.162 3.838 12 C -0.107 4.107 13 H 0.062 0.938 14 C -0.109 4.109 15 C 0.107 3.893 16 N -0.595 5.595 17 C 0.612 3.388 18 O -0.561 6.561 19 C -0.035 4.035 20 C -0.144 4.144 21 C -0.094 4.094 22 C -0.116 4.116 23 C -0.094 4.094 24 C -0.087 4.087 25 C 0.038 3.962 26 N -0.296 5.296 27 N -0.213 5.213 28 C 0.064 3.936 29 C 0.116 3.884 30 H -0.010 1.010 31 H 0.026 0.974 32 H 0.036 0.964 33 H 0.247 0.753 34 H 0.058 0.942 35 H 0.043 0.957 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.151 0.849 42 H 0.164 0.836 43 H 0.151 0.849 44 H 0.119 0.881 45 H 0.125 0.875 46 H 0.099 0.901 47 H 0.089 0.911 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.964 -17.790 -16.856 24.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.338 5.338 3 C -0.387 4.387 4 H 0.085 0.915 5 C -0.247 4.247 6 N -0.586 5.586 7 Si 0.792 3.208 8 H -0.193 1.193 9 H -0.219 1.219 10 H -0.221 1.221 11 C 0.035 3.965 12 C -0.129 4.129 13 H 0.081 0.919 14 C -0.147 4.147 15 C -0.015 4.015 16 N -0.326 5.326 17 C 0.398 3.602 18 O -0.438 6.438 19 C -0.172 4.172 20 C -0.152 4.152 21 C -0.115 4.115 22 C -0.135 4.135 23 C -0.116 4.116 24 C -0.107 4.107 25 C -0.106 4.106 26 N -0.134 5.134 27 N 0.003 4.997 28 C -0.074 4.074 29 C -0.006 4.006 30 H 0.008 0.992 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.169 0.831 42 H 0.182 0.818 43 H 0.169 0.831 44 H 0.137 0.863 45 H 0.143 0.857 46 H 0.118 0.882 47 H 0.108 0.892 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.684 -19.012 -16.541 25.257 hybrid contribution 0.773 1.900 0.522 2.116 sum 2.457 -17.113 -16.019 23.569 Atomic orbital electron populations 1.20591 0.82633 0.97336 0.96368 1.44055 1.02148 1.01401 1.86147 1.19521 0.98869 0.87177 1.33090 0.91468 1.25737 0.98528 1.01742 0.98722 1.70220 1.19692 1.27631 1.41094 0.85260 0.78124 0.80498 0.76923 1.19265 1.21869 1.22129 1.20738 0.95835 0.87219 0.92662 1.22896 0.95355 0.94988 0.99623 0.91944 1.22581 0.97087 0.97933 0.97078 1.22174 0.81939 0.98689 0.98659 1.48535 1.17732 1.43902 1.22474 1.16378 0.82992 0.78844 0.81998 1.90867 1.24455 1.59437 1.69086 1.20769 1.06066 0.96013 0.94307 1.19646 1.04671 1.00358 0.90571 1.20243 0.98540 0.95505 0.97185 1.21073 1.00044 1.00693 0.91723 1.21050 0.95655 0.93473 1.01421 1.20274 1.00975 0.99163 0.90296 1.21041 0.99507 0.93851 0.96177 1.73366 1.25106 1.25257 0.89625 1.46014 1.30481 1.17810 1.05434 1.22802 1.01592 0.95299 0.87704 1.22355 0.99921 0.93716 0.84595 0.99195 0.95495 0.94545 0.94369 0.92342 0.93821 0.89286 0.90520 0.91695 0.89623 0.86545 0.83132 0.81803 0.83150 0.86318 0.85684 0.88230 0.89248 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.08 8.84 127.77 1.13 9.21 16 2 N -0.61 -28.71 2.89 -726.90 -2.10 -30.82 16 3 C -0.26 -13.54 9.65 84.03 0.81 -12.72 16 4 H 0.07 3.49 7.85 -2.91 -0.02 3.47 16 5 C -0.05 -2.88 5.10 84.86 0.43 -2.44 16 6 N -0.94 -54.43 10.67 21.65 0.23 -54.20 16 7 Si 0.96 44.45 29.57 68.60 2.03 46.48 16 8 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 9 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 10 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 11 C 0.16 5.83 5.19 86.38 0.45 6.28 16 12 C -0.11 -3.18 3.25 -9.40 -0.03 -3.21 16 13 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 14 C -0.11 -2.70 5.01 31.78 0.16 -2.54 16 15 C 0.11 2.35 6.46 86.72 0.56 2.91 16 16 N -0.59 -15.17 3.33 -816.78 -2.72 -17.89 16 17 C 0.61 17.65 6.88 86.37 0.59 18.24 16 18 O -0.56 -19.90 17.41 -4.47 -0.08 -19.98 16 19 C -0.04 -0.94 5.88 41.05 0.24 -0.70 16 20 C -0.14 -3.91 6.41 -20.07 -0.13 -4.04 16 21 C -0.09 -2.29 10.06 22.21 0.22 -2.06 16 22 C -0.12 -2.09 9.92 22.07 0.22 -1.87 16 23 C -0.09 -1.44 9.89 22.01 0.22 -1.22 16 24 C -0.09 -1.62 10.09 22.37 0.23 -1.39 16 25 C 0.04 0.95 7.53 42.07 0.32 1.27 16 26 N -0.30 -7.33 11.88 -48.85 -0.58 -7.91 16 27 N -0.21 -4.81 3.71 -355.61 -1.32 -6.13 16 28 C 0.06 0.83 11.12 127.77 1.42 2.25 16 29 C 0.12 3.07 6.36 86.85 0.55 3.62 16 30 H -0.01 -0.52 7.82 -2.38 -0.02 -0.54 16 31 H 0.03 1.38 6.72 -2.39 -0.02 1.36 16 32 H 0.04 1.35 6.33 -2.39 -0.02 1.34 16 33 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 34 H 0.06 1.89 7.90 -2.39 -0.02 1.87 16 35 H 0.04 1.63 8.04 -2.39 -0.02 1.61 16 36 H 0.09 1.99 7.62 -2.39 -0.02 1.97 16 37 H 0.08 2.09 7.99 -2.39 -0.02 2.07 16 38 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.12 2.84 8.06 -2.91 -0.02 2.82 16 41 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 43 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 44 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.12 1.12 8.14 -2.38 -0.02 1.11 16 46 H 0.10 1.30 7.56 -2.39 -0.02 1.29 16 47 H 0.09 2.09 8.04 -2.39 -0.02 2.07 16 48 H 0.07 1.98 8.08 -2.39 -0.02 1.96 16 Total: -1.00 -72.69 393.62 3.81 -68.89 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.95 Total: 9.99 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 7.39 Total: 11.58 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -6.49 Total: -116.95 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.08 Total: -19.98 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -72.69 3.81 -68.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691990177.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.798 kcal (2) G-P(sol) polarization free energy of solvation -72.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds