Wall clock time and date at job start Wed Apr 1 2020 04:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36935 * 120.00179 * 2 1 4 4 H 1.08001 * 120.00461 * 137.63060 * 3 2 1 5 5 C 1.38817 * 119.99748 * 317.62232 * 3 2 1 6 6 N 1.31618 * 119.99946 * 353.79429 * 5 3 2 7 7 Si 1.86797 * 119.99878 * 173.78442 * 5 3 2 8 8 H 1.48504 * 109.46827 * 90.00732 * 7 5 3 9 9 H 1.48498 * 109.47451 * 210.00525 * 7 5 3 10 10 H 1.48502 * 109.47357 * 330.00690 * 7 5 3 11 11 C 1.46503 * 120.00071 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47385 * 277.98085 * 11 2 1 13 13 H 1.08997 * 109.99968 * 64.31200 * 12 11 2 14 14 C 1.54322 * 109.88438 * 185.41610 * 12 11 2 15 15 C 1.55153 * 102.94412 * 141.60441 * 14 12 11 16 16 C 1.54910 * 101.58518 * 324.50041 * 15 14 12 17 17 N 1.47192 * 109.79209 * 303.19859 * 12 11 2 18 18 C 1.34771 * 125.73541 * 61.64052 * 17 12 11 19 19 O 1.21576 * 120.00456 * 4.52476 * 18 17 12 20 20 C 1.47683 * 119.99885 * 184.51535 * 18 17 12 21 21 C 1.40133 * 119.90336 * 18.54049 * 20 18 17 22 22 C 1.36432 * 120.45957 * 179.97438 * 21 20 18 23 23 C 1.39062 * 120.14467 * 0.02562 * 22 21 20 24 24 C 1.40690 * 120.15091 * 359.97438 * 23 22 21 25 25 C 1.39119 * 119.90231 * 198.25727 * 20 18 17 26 26 N 1.35868 * 106.93655 * 179.97438 * 24 23 22 27 27 C 1.30067 * 109.56106 * 0.02562 * 26 24 23 28 28 N 1.36095 * 110.12758 * 359.97438 * 27 26 24 29 29 C 1.46498 * 126.30382 * 179.97438 * 28 27 26 30 30 H 1.09000 * 109.47104 * 274.60507 * 1 2 3 31 31 H 1.08994 * 109.47191 * 34.60131 * 1 2 3 32 32 H 1.09001 * 109.47311 * 154.60903 * 1 2 3 33 33 H 0.96997 * 119.99619 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.47320 * 157.97392 * 11 2 1 35 35 H 1.09003 * 109.46934 * 37.97977 * 11 2 1 36 36 H 1.08998 * 110.71989 * 23.24303 * 14 12 11 37 37 H 1.08997 * 110.72199 * 259.97268 * 14 12 11 38 38 H 1.09003 * 111.00620 * 206.42121 * 15 14 12 39 39 H 1.09005 * 111.00377 * 82.57289 * 15 14 12 40 40 H 1.08996 * 110.37081 * 155.84204 * 16 15 14 41 41 H 1.09001 * 110.36504 * 278.06210 * 16 15 14 42 42 H 1.08005 * 119.76886 * 359.97438 * 21 20 18 43 43 H 1.08004 * 119.92664 * 179.97438 * 22 21 20 44 44 H 1.07998 * 120.24503 * 0.02562 * 25 20 18 45 45 H 1.08001 * 124.93669 * 180.02562 * 27 26 24 46 46 H 1.08992 * 109.47135 * 270.02013 * 29 28 27 47 47 H 1.09005 * 109.46899 * 30.02166 * 29 28 27 48 48 H 1.08998 * 109.47349 * 150.01816 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0181 1.3081 0.6303 5 6 1.7276 2.2310 -0.8103 6 7 0.7463 2.0443 -1.6673 7 14 2.5522 3.9023 -0.6842 8 1 3.6972 3.9618 -1.6280 9 1 1.5728 4.9647 -1.0266 10 1 3.0423 4.1092 0.7023 11 6 2.1975 -1.2687 0.0006 12 6 2.2791 -1.8100 1.4293 13 1 1.2803 -2.0466 1.7959 14 6 3.1635 -3.0742 1.4620 15 6 3.9408 -2.9202 2.7959 16 6 4.1511 -1.3867 2.8582 17 7 2.9117 -0.8106 2.3054 18 6 2.4368 0.4243 2.5622 19 8 1.3582 0.7655 2.1170 20 6 3.2266 1.3629 3.3845 21 6 4.5980 1.1439 3.5721 22 6 5.3385 2.0040 4.3291 23 6 4.7361 3.1078 4.9228 24 6 3.3604 3.3429 4.7450 25 6 2.6082 2.4651 3.9659 26 7 3.0604 4.4757 5.4326 27 6 4.1347 4.9362 6.0033 28 7 5.1958 4.1317 5.7222 29 6 6.5734 4.3202 6.1837 30 1 -0.3633 0.0825 1.0243 31 1 -0.3633 0.8458 -0.5835 32 1 -0.3634 -0.9284 -0.4407 33 1 0.4512 2.7747 -2.2332 34 1 3.2042 -1.1073 -0.3849 35 1 1.6776 -1.9887 -0.6315 36 1 3.8497 -3.0868 0.6151 37 1 2.5492 -3.9744 1.4752 38 1 4.8957 -3.4442 2.7545 39 1 3.3429 -3.2670 3.6388 40 1 4.2918 -1.0646 3.8899 41 1 5.0082 -1.0964 2.2506 42 1 5.0719 0.2882 3.1141 43 1 6.3948 1.8267 4.4683 44 1 1.5522 2.6369 3.8185 45 1 4.1781 5.8269 6.6125 46 1 7.1184 4.9282 5.4617 47 1 6.5669 4.8231 7.1508 48 1 7.0596 3.3497 6.2821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700357980.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:36 Heat of formation + Delta-G solvation = 122.932145 kcal Electronic energy + Delta-G solvation = -31557.256534 eV Core-core repulsion = 27616.082111 eV Total energy + Delta-G solvation = -3941.174423 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 3.49 seconds Orbital eigenvalues (eV) -42.06623 -39.76878 -37.25901 -36.24981 -34.75771 -34.28829 -31.58051 -31.09837 -30.30441 -29.44510 -28.67370 -27.15383 -25.59154 -25.07974 -23.96748 -22.94902 -21.84665 -20.73912 -20.62207 -20.44140 -18.46836 -17.54290 -17.10958 -16.81700 -15.87630 -15.77664 -15.65065 -15.14688 -14.73871 -14.07374 -13.95889 -13.77227 -13.62502 -13.46127 -13.41626 -13.25023 -12.94972 -12.86538 -12.73001 -12.43144 -12.01462 -11.71384 -11.46418 -11.39274 -11.32478 -11.14370 -10.79436 -10.68650 -10.52000 -10.37597 -10.32615 -10.22880 -9.88635 -9.80627 -9.69585 -9.54108 -8.67901 -8.37868 -8.19038 -7.94225 -7.68371 -6.00569 -5.32554 -3.07226 1.12310 1.39173 2.54658 2.83392 3.49518 3.57282 3.62223 3.65862 3.71804 4.35595 4.40584 4.44536 4.52049 4.70233 4.81567 4.83770 4.90893 5.03355 5.12801 5.15286 5.19934 5.50101 5.52770 5.55678 5.62591 5.65762 5.73457 5.77815 5.87704 5.91684 6.03750 6.17975 6.19869 6.26807 6.35816 6.44838 6.49478 6.63423 6.68026 6.69097 6.91423 7.04008 7.10688 7.14841 7.27281 7.73242 7.90522 7.99756 8.23241 8.45554 8.90541 9.35776 9.55623 10.14969 10.74449 11.54137 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.010129 B = 0.005106 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.545147 B = 5482.412629 C = 7364.700750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.573 5.573 3 C -0.198 4.198 4 H 0.047 0.953 5 C 0.005 3.995 6 N -0.899 5.899 7 Si 0.888 3.112 8 H -0.291 1.291 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.140 3.860 12 C 0.118 3.882 13 H 0.061 0.939 14 C -0.127 4.127 15 C -0.134 4.134 16 C 0.097 3.903 17 N -0.610 5.610 18 C 0.551 3.449 19 O -0.439 6.439 20 C -0.116 4.116 21 C -0.089 4.089 22 C -0.126 4.126 23 C 0.057 3.943 24 C 0.035 3.965 25 C -0.002 4.002 26 N -0.486 5.486 27 C 0.247 3.753 28 N -0.500 5.500 29 C 0.082 3.918 30 H 0.000 1.000 31 H 0.090 0.910 32 H -0.005 1.005 33 H 0.249 0.751 34 H 0.048 0.952 35 H 0.034 0.966 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.149 0.851 43 H 0.120 0.880 44 H 0.141 0.859 45 H 0.212 0.788 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.012 -4.085 16.467 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.293 5.293 3 C -0.328 4.328 4 H 0.065 0.935 5 C -0.193 4.193 6 N -0.545 5.545 7 Si 0.719 3.281 8 H -0.219 1.219 9 H -0.218 1.218 10 H -0.203 1.203 11 C 0.012 3.988 12 C 0.012 3.988 13 H 0.079 0.921 14 C -0.166 4.166 15 C -0.172 4.172 16 C -0.027 4.027 17 N -0.349 5.349 18 C 0.338 3.662 19 O -0.308 6.308 20 C -0.122 4.122 21 C -0.109 4.109 22 C -0.147 4.147 23 C -0.052 4.052 24 C -0.082 4.082 25 C -0.022 4.022 26 N -0.205 5.205 27 C -0.038 4.038 28 N -0.192 5.192 29 C -0.060 4.060 30 H 0.018 0.982 31 H 0.108 0.892 32 H 0.014 0.986 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.166 0.834 43 H 0.138 0.862 44 H 0.159 0.841 45 H 0.228 0.772 46 H 0.091 0.909 47 H 0.105 0.895 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.534 -3.260 16.171 20.718 hybrid contribution 1.527 0.850 0.101 1.751 sum 14.061 -2.409 16.272 21.640 Atomic orbital electron populations 1.21208 0.83878 0.99525 0.97333 1.43410 1.01230 0.99697 1.84985 1.18766 1.08584 0.90323 1.15146 0.93524 1.25253 0.98917 0.98878 0.96246 1.69740 1.29473 1.30874 1.24399 0.86481 0.78820 0.85069 0.77756 1.21853 1.21761 1.20332 1.21186 0.96585 0.89674 0.91398 1.22476 0.95285 0.86461 0.94534 0.92116 1.22661 0.98839 0.97643 0.97428 1.22775 1.00550 0.95525 0.98318 1.22504 0.88744 0.93071 0.98363 1.48019 1.24195 1.13994 1.48650 1.17225 0.86978 0.80166 0.81788 1.90963 1.20510 1.73985 1.45301 1.19846 0.93957 0.97281 1.01098 1.21557 0.93428 0.99263 0.96628 1.19510 0.99468 0.93959 1.01765 1.19014 0.95201 0.92792 0.98180 1.18890 0.91144 0.95743 1.02407 1.20381 1.00408 0.89985 0.91411 1.70449 1.26913 1.10286 1.12811 1.25288 0.81148 0.97267 1.00133 1.45217 1.09816 1.21930 1.42238 1.21925 0.79783 1.03663 1.00677 0.98204 0.89242 0.98635 0.94091 0.93327 0.94742 0.90747 0.90923 0.90641 0.91102 0.90928 0.91990 0.83369 0.86184 0.84136 0.77204 0.90885 0.89521 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.40 9.69 59.84 0.58 3.98 16 2 N -0.57 -15.22 1.60 -181.12 -0.29 -15.52 16 3 C -0.20 -5.68 6.32 -15.06 -0.10 -5.78 16 4 H 0.05 1.36 5.90 -52.49 -0.31 1.05 16 5 C 0.00 0.14 5.29 -17.43 -0.09 0.05 16 6 N -0.90 -27.98 10.90 55.49 0.60 -27.37 16 7 Si 0.89 23.94 29.56 -169.99 -5.02 18.92 16 8 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 9 H -0.29 -7.91 7.11 56.52 0.40 -7.51 16 10 H -0.28 -7.59 7.11 56.52 0.40 -7.18 16 11 C 0.14 3.04 5.31 -4.04 -0.02 3.01 16 12 C 0.12 2.11 3.32 -66.86 -0.22 1.89 16 13 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.13 -1.61 6.48 -24.90 -0.16 -1.77 16 15 C -0.13 -1.43 7.09 -24.58 -0.17 -1.60 16 16 C 0.10 1.25 4.92 -2.53 -0.01 1.24 16 17 N -0.61 -11.03 3.07 -164.05 -0.50 -11.53 16 18 C 0.55 11.83 4.90 -12.41 -0.06 11.77 16 19 O -0.44 -11.34 10.08 5.30 0.05 -11.28 16 20 C -0.12 -2.23 5.73 -105.00 -0.60 -2.83 16 21 C -0.09 -1.37 8.02 -39.52 -0.32 -1.69 16 22 C -0.13 -1.72 9.97 -39.93 -0.40 -2.12 16 23 C 0.06 0.87 6.87 -83.95 -0.58 0.29 16 24 C 0.04 0.64 7.22 -84.72 -0.61 0.03 16 25 C 0.00 -0.03 9.63 -38.82 -0.37 -0.41 16 26 N -0.49 -8.30 11.28 -12.06 -0.14 -8.44 16 27 C 0.25 2.99 12.50 -89.76 -1.12 1.87 16 28 N -0.50 -5.76 3.20 -123.13 -0.39 -6.16 16 29 C 0.08 0.49 11.17 59.85 0.67 1.16 16 30 H 0.00 0.00 6.66 -51.93 -0.35 -0.35 16 31 H 0.09 2.72 5.23 -51.93 -0.27 2.45 16 32 H -0.01 -0.13 7.93 -51.93 -0.41 -0.54 16 33 H 0.25 7.51 8.31 -40.82 -0.34 7.18 16 34 H 0.05 1.07 7.90 -51.93 -0.41 0.66 16 35 H 0.03 0.72 7.99 -51.93 -0.42 0.30 16 36 H 0.07 0.91 7.80 -51.93 -0.40 0.51 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.85 6.41 -51.93 -0.33 0.52 16 41 H 0.06 0.76 7.01 -51.93 -0.36 0.39 16 42 H 0.15 1.95 3.95 -52.48 -0.21 1.74 16 43 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 44 H 0.14 3.01 7.74 -52.49 -0.41 2.60 16 45 H 0.21 1.43 8.06 -52.49 -0.42 1.01 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 371.35 15.07 5.60 5.60 Total: -1.00 -38.36 371.35 -10.50 -48.86 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.82 Total: -2.18 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: -3.59 Total: 9.10 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -0.72 Total: -69.02 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.05 Total: -11.28 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -5.02 Total: 18.92 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.36 -10.50 -48.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700357980.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.796 kcal (2) G-P(sol) polarization free energy of solvation -38.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.49 seconds