Wall clock time and date at job start Wed Apr 1 2020 04:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36935 * 120.00179 * 2 1 4 4 H 1.08001 * 120.00461 * 137.63060 * 3 2 1 5 5 C 1.38817 * 119.99748 * 317.62232 * 3 2 1 6 6 N 1.31618 * 119.99946 * 353.79429 * 5 3 2 7 7 Si 1.86797 * 119.99878 * 173.78442 * 5 3 2 8 8 H 1.48504 * 109.46827 * 90.00732 * 7 5 3 9 9 H 1.48498 * 109.47451 * 210.00525 * 7 5 3 10 10 H 1.48502 * 109.47357 * 330.00690 * 7 5 3 11 11 C 1.46503 * 120.00071 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47385 * 277.98085 * 11 2 1 13 13 H 1.08997 * 109.99968 * 64.31200 * 12 11 2 14 14 C 1.54322 * 109.88438 * 185.41610 * 12 11 2 15 15 C 1.55153 * 102.94412 * 141.60441 * 14 12 11 16 16 C 1.54910 * 101.58518 * 324.50041 * 15 14 12 17 17 N 1.47192 * 109.79209 * 303.19859 * 12 11 2 18 18 C 1.34771 * 125.73541 * 61.64052 * 17 12 11 19 19 O 1.21576 * 120.00456 * 4.52476 * 18 17 12 20 20 C 1.47683 * 119.99885 * 184.51535 * 18 17 12 21 21 C 1.40133 * 119.90336 * 18.54049 * 20 18 17 22 22 C 1.36432 * 120.45957 * 179.97438 * 21 20 18 23 23 C 1.39062 * 120.14467 * 0.02562 * 22 21 20 24 24 C 1.40690 * 120.15091 * 359.97438 * 23 22 21 25 25 C 1.39119 * 119.90231 * 198.25727 * 20 18 17 26 26 N 1.35868 * 106.93655 * 179.97438 * 24 23 22 27 27 C 1.30067 * 109.56106 * 0.02562 * 26 24 23 28 28 N 1.36095 * 110.12758 * 359.97438 * 27 26 24 29 29 C 1.46498 * 126.30382 * 179.97438 * 28 27 26 30 30 H 1.09000 * 109.47104 * 274.60507 * 1 2 3 31 31 H 1.08994 * 109.47191 * 34.60131 * 1 2 3 32 32 H 1.09001 * 109.47311 * 154.60903 * 1 2 3 33 33 H 0.96997 * 119.99619 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.47320 * 157.97392 * 11 2 1 35 35 H 1.09003 * 109.46934 * 37.97977 * 11 2 1 36 36 H 1.08998 * 110.71989 * 23.24303 * 14 12 11 37 37 H 1.08997 * 110.72199 * 259.97268 * 14 12 11 38 38 H 1.09003 * 111.00620 * 206.42121 * 15 14 12 39 39 H 1.09005 * 111.00377 * 82.57289 * 15 14 12 40 40 H 1.08996 * 110.37081 * 155.84204 * 16 15 14 41 41 H 1.09001 * 110.36504 * 278.06210 * 16 15 14 42 42 H 1.08005 * 119.76886 * 359.97438 * 21 20 18 43 43 H 1.08004 * 119.92664 * 179.97438 * 22 21 20 44 44 H 1.07998 * 120.24503 * 0.02562 * 25 20 18 45 45 H 1.08001 * 124.93669 * 180.02562 * 27 26 24 46 46 H 1.08992 * 109.47135 * 270.02013 * 29 28 27 47 47 H 1.09005 * 109.46899 * 30.02166 * 29 28 27 48 48 H 1.08998 * 109.47349 * 150.01816 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0181 1.3081 0.6303 5 6 1.7276 2.2310 -0.8103 6 7 0.7463 2.0443 -1.6673 7 14 2.5522 3.9023 -0.6842 8 1 3.6972 3.9618 -1.6280 9 1 1.5728 4.9647 -1.0266 10 1 3.0423 4.1092 0.7023 11 6 2.1975 -1.2687 0.0006 12 6 2.2791 -1.8100 1.4293 13 1 1.2803 -2.0466 1.7959 14 6 3.1635 -3.0742 1.4620 15 6 3.9408 -2.9202 2.7959 16 6 4.1511 -1.3867 2.8582 17 7 2.9117 -0.8106 2.3054 18 6 2.4368 0.4243 2.5622 19 8 1.3582 0.7655 2.1170 20 6 3.2266 1.3629 3.3845 21 6 4.5980 1.1439 3.5721 22 6 5.3385 2.0040 4.3291 23 6 4.7361 3.1078 4.9228 24 6 3.3604 3.3429 4.7450 25 6 2.6082 2.4651 3.9659 26 7 3.0604 4.4757 5.4326 27 6 4.1347 4.9362 6.0033 28 7 5.1958 4.1317 5.7222 29 6 6.5734 4.3202 6.1837 30 1 -0.3633 0.0825 1.0243 31 1 -0.3633 0.8458 -0.5835 32 1 -0.3634 -0.9284 -0.4407 33 1 0.4512 2.7747 -2.2332 34 1 3.2042 -1.1073 -0.3849 35 1 1.6776 -1.9887 -0.6315 36 1 3.8497 -3.0868 0.6151 37 1 2.5492 -3.9744 1.4752 38 1 4.8957 -3.4442 2.7545 39 1 3.3429 -3.2670 3.6388 40 1 4.2918 -1.0646 3.8899 41 1 5.0082 -1.0964 2.2506 42 1 5.0719 0.2882 3.1141 43 1 6.3948 1.8267 4.4683 44 1 1.5522 2.6369 3.8185 45 1 4.1781 5.8269 6.6125 46 1 7.1184 4.9282 5.4617 47 1 6.5669 4.8231 7.1508 48 1 7.0596 3.3497 6.2821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700357980.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:25 Heat of formation + Delta-G solvation = 98.177722 kcal Electronic energy + Delta-G solvation = -31558.329966 eV Core-core repulsion = 27616.082111 eV Total energy + Delta-G solvation = -3942.247855 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 7.63 seconds Orbital eigenvalues (eV) -43.14747 -41.21189 -38.54400 -37.73818 -36.70688 -35.24780 -33.45651 -32.54835 -31.49135 -30.89205 -30.02554 -27.90357 -27.80039 -26.65908 -25.31636 -24.20821 -23.25329 -22.27599 -21.77858 -21.67337 -19.91103 -18.86852 -18.75737 -18.08524 -17.21984 -16.92184 -16.83792 -16.74649 -16.50708 -15.57154 -15.40354 -15.08239 -15.06811 -14.97217 -14.62044 -14.48546 -14.21889 -14.05577 -13.74922 -13.49749 -13.40669 -13.28178 -13.12863 -12.97439 -12.84051 -12.62009 -12.57880 -12.36322 -12.29507 -11.83446 -11.78216 -11.68686 -11.51834 -11.44385 -11.34923 -11.01619 -10.53964 -10.32780 -9.42529 -9.36567 -9.10305 -8.15857 -7.51445 -5.33217 -0.09774 0.13982 1.30079 1.35782 1.44545 1.69684 1.79343 2.21717 2.33180 2.51370 2.97444 3.30633 3.44905 3.57538 3.70735 3.78371 3.90087 3.98640 4.03777 4.16374 4.21452 4.32518 4.37304 4.38893 4.48852 4.52433 4.62909 4.68860 4.71913 4.76139 4.79871 4.90754 4.98494 5.02468 5.07804 5.13135 5.23306 5.28583 5.32187 5.36983 5.39505 5.46901 5.52163 5.67834 5.74676 5.91224 5.95575 6.20690 6.64147 6.83853 6.97508 7.32628 7.77764 8.01224 8.54926 9.28943 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.010129 B = 0.005106 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.545147 B = 5482.412629 C = 7364.700750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.139 3.861 2 N -0.585 5.585 3 C -0.174 4.174 4 H 0.042 0.958 5 C -0.057 4.057 6 N -0.934 5.934 7 Si 0.941 3.059 8 H -0.276 1.276 9 H -0.299 1.299 10 H -0.290 1.290 11 C 0.138 3.862 12 C 0.119 3.881 13 H 0.037 0.963 14 C -0.116 4.116 15 C -0.118 4.118 16 C 0.085 3.915 17 N -0.612 5.612 18 C 0.547 3.453 19 O -0.508 6.508 20 C -0.134 4.134 21 C -0.095 4.095 22 C -0.102 4.102 23 C 0.054 3.946 24 C 0.005 3.995 25 C -0.041 4.041 26 N -0.549 5.549 27 C 0.270 3.730 28 N -0.492 5.492 29 C 0.071 3.929 30 H -0.017 1.017 31 H 0.058 0.942 32 H 0.012 0.988 33 H 0.242 0.758 34 H 0.048 0.952 35 H 0.042 0.958 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.176 0.824 43 H 0.172 0.828 44 H 0.097 0.903 45 H 0.264 0.736 46 H 0.085 0.915 47 H 0.120 0.880 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.588 -5.324 18.987 27.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.306 5.306 3 C -0.306 4.306 4 H 0.059 0.941 5 C -0.250 4.250 6 N -0.583 5.583 7 Si 0.772 3.228 8 H -0.202 1.202 9 H -0.226 1.226 10 H -0.216 1.216 11 C 0.011 3.989 12 C 0.013 3.987 13 H 0.055 0.945 14 C -0.154 4.154 15 C -0.156 4.156 16 C -0.037 4.037 17 N -0.349 5.349 18 C 0.335 3.665 19 O -0.382 6.382 20 C -0.139 4.139 21 C -0.115 4.115 22 C -0.123 4.123 23 C -0.057 4.057 24 C -0.112 4.112 25 C -0.062 4.062 26 N -0.269 5.269 27 C -0.015 4.015 28 N -0.181 5.181 29 C -0.068 4.068 30 H 0.001 0.999 31 H 0.076 0.924 32 H 0.030 0.970 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.134 0.866 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.192 0.808 43 H 0.189 0.811 44 H 0.115 0.885 45 H 0.279 0.721 46 H 0.103 0.897 47 H 0.138 0.862 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 18.225 -4.557 18.730 26.528 hybrid contribution -0.127 1.247 -0.407 1.318 sum 18.098 -3.311 18.322 25.966 Atomic orbital electron populations 1.20885 0.85078 0.98880 0.95821 1.43540 1.00955 1.01046 1.85061 1.18820 1.07566 0.91290 1.12919 0.94070 1.25824 1.00292 1.01691 0.97235 1.69886 1.31278 1.31112 1.25974 0.85642 0.78182 0.82053 0.76958 1.20204 1.22550 1.21626 1.21405 0.95742 0.87565 0.94178 1.22328 0.96013 0.88700 0.91630 0.94523 1.22630 0.98442 0.94996 0.99345 1.22787 1.02212 0.93637 0.96931 1.22897 0.86719 0.94736 0.99310 1.48156 1.25740 1.12996 1.47963 1.17819 0.86388 0.81313 0.80943 1.90929 1.23196 1.75636 1.48465 1.19797 0.95818 0.96788 1.01532 1.21779 0.91454 1.00816 0.97413 1.19996 1.01423 0.91903 0.98945 1.19234 0.93909 0.94018 0.98520 1.19016 0.93014 0.96295 1.02890 1.20210 0.99004 0.92383 0.94554 1.70394 1.30047 1.11185 1.15284 1.26310 0.80014 0.97401 0.97797 1.45593 1.11798 1.20142 1.40573 1.22418 0.76501 1.05375 1.02555 0.99852 0.92398 0.96959 0.94850 0.93382 0.93964 0.89555 0.88949 0.86617 0.90646 0.89331 0.90152 0.80762 0.81086 0.88503 0.72077 0.89663 0.86158 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 8.05 9.69 127.77 1.24 9.29 16 2 N -0.59 -32.51 1.60 -726.94 -1.16 -33.67 16 3 C -0.17 -10.48 6.32 84.04 0.53 -9.95 16 4 H 0.04 2.50 5.90 -2.91 -0.02 2.48 16 5 C -0.06 -3.61 5.29 84.86 0.45 -3.16 16 6 N -0.93 -61.30 10.90 21.65 0.24 -61.07 16 7 Si 0.94 51.86 29.56 68.60 2.03 53.89 16 8 H -0.28 -14.28 7.11 99.48 0.71 -13.58 16 9 H -0.30 -16.61 7.11 99.48 0.71 -15.90 16 10 H -0.29 -16.33 7.11 99.48 0.71 -15.62 16 11 C 0.14 6.01 5.31 86.38 0.46 6.47 16 12 C 0.12 4.20 3.32 45.31 0.15 4.35 16 13 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 14 C -0.12 -2.52 6.48 31.78 0.21 -2.32 16 15 C -0.12 -1.95 7.09 31.99 0.23 -1.73 16 16 C 0.08 1.91 4.92 86.86 0.43 2.34 16 17 N -0.61 -21.97 3.07 -791.22 -2.43 -24.40 16 18 C 0.55 24.71 4.90 86.74 0.42 25.14 16 19 O -0.51 -28.59 10.08 -3.95 -0.04 -28.63 16 20 C -0.13 -5.35 5.73 -20.11 -0.12 -5.46 16 21 C -0.10 -2.74 8.02 22.31 0.18 -2.56 16 22 C -0.10 -2.41 9.97 22.05 0.22 -2.19 16 23 C 0.05 1.52 6.87 39.00 0.27 1.79 16 24 C 0.00 0.18 7.22 39.40 0.28 0.46 16 25 C -0.04 -1.79 9.63 22.76 0.22 -1.57 16 26 N -0.55 -19.09 11.28 -192.07 -2.17 -21.25 16 27 C 0.27 5.82 12.50 180.05 2.25 8.07 16 28 N -0.49 -9.42 3.20 -543.47 -1.74 -11.16 16 29 C 0.07 0.45 11.17 127.77 1.43 1.87 16 30 H -0.02 -1.00 6.66 -2.39 -0.02 -1.02 16 31 H 0.06 3.79 5.23 -2.39 -0.01 3.78 16 32 H 0.01 0.62 7.93 -2.39 -0.02 0.60 16 33 H 0.24 15.47 8.31 -92.71 -0.77 14.70 16 34 H 0.05 2.08 7.90 -2.39 -0.02 2.06 16 35 H 0.04 1.76 7.99 -2.39 -0.02 1.74 16 36 H 0.09 1.74 7.80 -2.39 -0.02 1.72 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.09 1.76 6.41 -2.39 -0.02 1.74 16 41 H 0.08 1.58 7.01 -2.39 -0.02 1.56 16 42 H 0.18 3.93 3.95 -2.91 -0.01 3.92 16 43 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 44 H 0.10 4.87 7.74 -2.91 -0.02 4.85 16 45 H 0.26 2.37 8.06 -2.91 -0.02 2.35 16 46 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.12 0.02 8.14 -2.38 -0.02 0.00 16 48 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -96.14 371.35 4.55 -91.59 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: 0.98 Total: 3.87 kcal Atomic # 6 Polarization: 22.00 SS G_CDS: 8.84 Total: 30.84 kcal Atomic # 7 Polarization: -144.29 SS G_CDS: -7.26 Total: -151.55 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.04 Total: -28.63 kcal Atomic # 14 Polarization: 51.86 SS G_CDS: 2.03 Total: 53.89 kcal Total: -96.14 4.55 -91.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700357980.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.764 kcal (2) G-P(sol) polarization free energy of solvation -96.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.63 seconds