Wall clock time and date at job start Wed Apr 1 2020 04:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36084 * 126.30629 * 2 1 4 4 N 1.30064 * 110.13153 * 180.02562 * 3 2 1 5 5 C 1.35864 * 109.56069 * 359.97438 * 4 3 2 6 6 C 1.39408 * 133.52489 * 180.02562 * 5 4 3 7 7 C 1.39125 * 119.50990 * 180.02562 * 6 5 4 8 8 C 1.47682 * 119.89694 * 180.02562 * 7 6 5 9 9 O 1.21573 * 120.00145 * 322.61163 * 8 7 6 10 10 N 1.34782 * 119.99695 * 142.61545 * 8 7 6 11 11 C 1.46920 * 120.63067 * 353.62428 * 10 8 7 12 12 C 1.53190 * 108.77793 * 233.62767 * 11 10 8 13 13 C 1.53038 * 109.31373 * 305.36891 * 12 11 10 14 14 C 1.53043 * 109.53754 * 61.35800 * 13 12 11 15 15 C 1.46997 * 120.61191 * 173.64299 * 10 8 7 16 16 H 1.09000 * 109.58007 * 246.14935 * 15 10 8 17 17 C 1.52999 * 109.63227 * 6.60058 * 15 10 8 18 18 N 1.46504 * 109.47101 * 290.22380 * 17 15 10 19 19 C 1.36935 * 119.99956 * 185.24411 * 18 17 15 20 20 H 1.08005 * 119.99912 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99706 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00173 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99650 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47142 * 59.99826 * 23 21 19 25 25 H 1.48503 * 109.46992 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46890 * 299.99748 * 23 21 19 27 27 C 1.40132 * 120.19583 * 0.26638 * 7 6 5 28 28 C 1.36433 * 120.45702 * 359.44819 * 27 7 6 29 29 C 1.37797 * 126.30279 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.46964 * 89.97745 * 1 2 3 31 31 H 1.09002 * 109.47483 * 209.98118 * 1 2 3 32 32 H 1.09001 * 109.47004 * 329.97366 * 1 2 3 33 33 H 1.08004 * 124.93764 * 0.05240 * 3 2 1 34 34 H 1.07995 * 120.24398 * 359.97438 * 6 5 4 35 35 H 1.09006 * 109.58616 * 113.83879 * 11 10 8 36 36 H 1.09002 * 109.58723 * 353.42091 * 11 10 8 37 37 H 1.09002 * 109.50306 * 185.41246 * 12 11 10 38 38 H 1.09003 * 109.49349 * 65.31693 * 12 11 10 39 39 H 1.09002 * 109.45632 * 301.33907 * 13 12 11 40 40 H 1.08995 * 109.44746 * 181.37607 * 13 12 11 41 41 H 1.09000 * 109.49436 * 58.59080 * 14 13 12 42 42 H 1.09001 * 109.49501 * 178.65073 * 14 13 12 43 43 H 1.09007 * 109.46854 * 50.21867 * 17 15 10 44 44 H 1.08995 * 109.47396 * 170.21854 * 17 15 10 45 45 H 0.96999 * 119.99821 * 5.24442 * 18 17 15 46 46 H 0.96998 * 120.00114 * 179.97438 * 22 21 19 47 47 H 1.08001 * 119.76959 * 179.72566 * 27 7 6 48 48 H 1.07996 * 119.93037 * 180.25050 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2708 1.0967 0.0000 4 7 3.5199 0.7343 -0.0005 5 6 3.6002 -0.6219 -0.0004 6 6 4.6659 -1.5206 -0.0003 7 6 4.4093 -2.8880 -0.0006 8 6 5.5318 -3.8476 0.0000 9 8 6.5379 -3.6067 -0.6385 10 7 5.4409 -4.9906 0.7086 11 6 4.2940 -5.2330 1.5943 12 6 4.8153 -5.5763 2.9933 13 6 5.7929 -6.7496 2.8953 14 6 6.9837 -6.3520 2.0201 15 6 6.4877 -6.0178 0.6098 16 1 6.0772 -6.9142 0.1449 17 6 7.6508 -5.4873 -0.2307 18 7 7.2302 -5.3727 -1.6294 19 6 8.1389 -5.0191 -2.5908 20 1 9.1658 -4.8250 -2.3181 21 6 7.7404 -4.9110 -3.9161 22 7 6.4894 -5.1489 -4.2487 23 14 8.9802 -4.4292 -5.2278 24 1 10.0771 -5.4296 -5.2633 25 1 8.3083 -4.3848 -6.5514 26 1 9.5407 -3.0910 -4.9114 27 6 3.0889 -3.3573 -0.0067 28 6 2.0434 -2.4808 -0.0010 29 6 2.2808 -1.1105 -0.0005 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3634 -0.8901 0.5135 32 1 -0.3633 0.8898 0.5143 33 1 1.9235 2.1193 0.0008 34 1 5.6832 -1.1580 -0.0008 35 1 3.7046 -6.0653 1.2095 36 1 3.6753 -4.3370 1.6445 37 1 3.9790 -5.8521 3.6357 38 1 5.3271 -4.7104 3.4133 39 1 5.2871 -7.6076 2.4524 40 1 6.1464 -7.0116 3.8925 41 1 7.4751 -5.4789 2.4494 42 1 7.6911 -7.1798 1.9704 43 1 7.9496 -4.5068 0.1403 44 1 8.4936 -6.1749 -0.1599 45 1 6.3081 -5.5473 -1.8744 46 1 6.2109 -5.0730 -5.1747 47 1 2.8976 -4.4202 -0.0114 48 1 1.0292 -2.8519 -0.0016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714130344.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:18 Heat of formation + Delta-G solvation = 104.854488 kcal Electronic energy + Delta-G solvation = -30780.018109 eV Core-core repulsion = 26838.059780 eV Total energy + Delta-G solvation = -3941.958329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.16721 -40.16387 -37.40607 -36.54617 -34.40316 -34.24227 -32.56018 -31.90661 -30.45600 -29.74256 -29.30068 -27.27401 -26.08132 -24.40753 -23.81305 -22.70799 -22.38941 -21.23161 -20.71969 -20.43691 -18.98215 -17.58533 -17.23102 -16.68163 -16.03591 -15.94836 -15.41221 -14.99796 -14.81617 -14.42406 -14.35655 -14.06852 -13.95730 -13.78600 -13.44614 -13.42032 -13.27117 -13.00771 -12.85646 -12.63481 -12.39776 -12.07196 -12.01425 -11.71249 -11.54098 -11.35529 -10.94002 -10.81543 -10.65747 -10.61265 -10.44332 -10.39883 -10.25355 -9.98802 -9.80926 -9.42610 -8.66730 -8.41549 -8.18692 -8.02676 -7.97681 -6.44166 -5.47570 -2.66881 1.01000 1.29264 2.47068 2.74001 3.43193 3.44388 3.61948 3.65003 3.67060 4.09085 4.26059 4.39185 4.44554 4.79193 4.81377 4.83678 4.89283 4.95305 4.99623 5.07189 5.08108 5.26039 5.39672 5.41387 5.42828 5.50423 5.60339 5.66688 5.74210 5.86666 5.88556 5.91881 6.03098 6.06162 6.12247 6.15799 6.22328 6.35989 6.43401 6.51235 6.54731 6.62952 6.73826 6.83692 7.01698 7.04854 7.39707 7.81353 7.94931 8.04191 8.70824 9.02521 9.81991 10.42342 10.76619 11.76467 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.008606 B = 0.004317 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.654487 B = 6484.309826 C = 8931.188335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.499 5.499 3 C 0.250 3.750 4 N -0.487 5.487 5 C 0.038 3.962 6 C -0.007 4.007 7 C -0.118 4.118 8 C 0.521 3.479 9 O -0.437 6.437 10 N -0.611 5.611 11 C 0.101 3.899 12 C -0.134 4.134 13 C -0.117 4.117 14 C -0.127 4.127 15 C 0.144 3.856 16 H 0.068 0.932 17 C 0.158 3.842 18 N -0.698 5.698 19 C -0.207 4.207 20 H 0.065 0.935 21 C -0.021 4.021 22 N -0.939 5.939 23 Si 0.901 3.099 24 H -0.290 1.290 25 H -0.294 1.294 26 H -0.289 1.289 27 C -0.071 4.071 28 C -0.122 4.122 29 C 0.058 3.942 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.212 0.788 34 H 0.138 0.862 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.044 0.956 44 H 0.014 0.986 45 H 0.379 0.621 46 H 0.250 0.750 47 H 0.137 0.863 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.451 4.988 17.533 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.190 5.190 3 C -0.036 4.036 4 N -0.206 5.206 5 C -0.080 4.080 6 C -0.027 4.027 7 C -0.124 4.124 8 C 0.307 3.693 9 O -0.305 6.305 10 N -0.349 5.349 11 C -0.022 4.022 12 C -0.173 4.173 13 C -0.155 4.155 14 C -0.166 4.166 15 C 0.041 3.959 16 H 0.086 0.914 17 C 0.031 3.969 18 N -0.340 5.340 19 C -0.339 4.339 20 H 0.082 0.918 21 C -0.215 4.215 22 N -0.589 5.589 23 Si 0.733 3.267 24 H -0.217 1.217 25 H -0.220 1.220 26 H -0.216 1.216 27 C -0.091 4.091 28 C -0.143 4.143 29 C -0.052 4.052 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.229 0.771 34 H 0.156 0.844 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.032 0.968 45 H 0.212 0.788 46 H 0.059 0.941 47 H 0.155 0.845 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.120 5.725 17.050 23.497 hybrid contribution -0.736 -0.155 -0.962 1.221 sum -15.856 5.570 16.088 23.265 Atomic orbital electron populations 1.21949 0.76262 1.04460 1.03476 1.45228 1.07181 1.05613 1.60977 1.25305 0.85210 0.93257 0.99841 1.70458 1.18170 1.11072 1.20859 1.18863 0.91963 0.90059 1.07085 1.20307 0.98063 0.89969 0.94372 1.19838 0.93901 0.93455 1.05240 1.18088 0.87903 0.82061 0.81256 1.91192 1.28545 1.72934 1.37878 1.47716 1.23196 1.18484 1.45533 1.21973 0.88936 1.01718 0.89571 1.21928 0.99332 0.99052 0.96945 1.21498 0.96523 0.97840 0.99630 1.21909 0.97617 1.01752 0.95344 1.21503 0.88990 0.90341 0.95056 0.91364 1.20948 0.92203 0.97658 0.86130 1.42237 1.10129 1.81075 1.00582 1.19114 0.91202 1.36258 0.87320 0.91751 1.24592 0.96086 1.03824 0.97029 1.69640 1.15134 1.57392 1.16756 0.86332 0.80427 0.78345 0.81570 1.21696 1.22043 1.21606 1.20906 0.91021 0.99808 0.97334 1.19500 0.99517 0.88555 1.06759 1.18982 0.91133 0.89421 1.05624 0.90756 0.89843 0.89465 0.77144 0.84440 0.91976 0.89139 0.91357 0.91643 0.91926 0.92154 0.91548 0.90960 0.93862 0.96843 0.78752 0.94068 0.84484 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 11.17 59.85 0.67 1.08 16 2 N -0.50 -5.12 3.20 -123.13 -0.39 -5.52 16 3 C 0.25 2.69 12.50 -89.78 -1.12 1.57 16 4 N -0.49 -7.56 11.28 -12.06 -0.14 -7.69 16 5 C 0.04 0.62 7.22 -84.72 -0.61 0.01 16 6 C -0.01 -0.12 9.66 -38.82 -0.38 -0.50 16 7 C -0.12 -2.06 5.20 -105.00 -0.55 -2.61 16 8 C 0.52 10.37 6.73 -12.40 -0.08 10.29 16 9 O -0.44 -10.93 10.72 5.30 0.06 -10.87 16 10 N -0.61 -10.04 2.97 -166.33 -0.49 -10.54 16 11 C 0.10 1.21 4.80 -3.71 -0.02 1.19 16 12 C -0.13 -1.36 6.08 -26.61 -0.16 -1.52 16 13 C -0.12 -1.23 5.88 -26.69 -0.16 -1.39 16 14 C -0.13 -1.68 5.36 -26.61 -0.14 -1.83 16 15 C 0.14 2.48 2.93 -67.56 -0.20 2.28 16 16 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 17 C 0.16 3.50 4.87 -4.04 -0.02 3.48 16 18 N -0.70 -19.12 3.25 -59.91 -0.19 -19.31 16 19 C -0.21 -6.30 9.74 -15.06 -0.15 -6.44 16 20 H 0.06 1.93 7.83 -52.48 -0.41 1.52 16 21 C -0.02 -0.65 5.50 -17.43 -0.10 -0.74 16 22 N -0.94 -30.44 13.06 55.49 0.72 -29.71 16 23 Si 0.90 24.37 29.55 -169.99 -5.02 19.34 16 24 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 25 H -0.29 -7.97 7.11 56.52 0.40 -7.57 16 26 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 27 C -0.07 -0.99 7.28 -39.52 -0.29 -1.28 16 28 C -0.12 -1.51 9.97 -39.92 -0.40 -1.91 16 29 C 0.06 0.79 6.87 -83.95 -0.58 0.21 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.21 1.20 8.06 -52.48 -0.42 0.77 16 34 H 0.14 2.60 8.02 -52.49 -0.42 2.18 16 35 H 0.06 0.67 8.06 -51.93 -0.42 0.25 16 36 H 0.09 1.02 4.64 -51.93 -0.24 0.78 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.04 1.04 6.26 -51.92 -0.33 0.72 16 44 H 0.01 0.30 8.12 -51.93 -0.42 -0.12 16 45 H 0.38 11.01 7.09 -40.82 -0.29 10.72 16 46 H 0.25 7.88 8.31 -40.82 -0.34 7.54 16 47 H 0.14 1.69 6.30 -52.49 -0.33 1.36 16 48 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 379.28 15.07 5.72 5.72 Total: -1.00 -39.25 379.28 -11.08 -50.33 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -7.07 Total: 6.37 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -4.27 Total: 1.89 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -0.49 Total: -72.78 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.06 Total: -10.87 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -5.02 Total: 19.34 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -39.25 -11.08 -50.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714130344.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.185 kcal (2) G-P(sol) polarization free energy of solvation -39.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds