Wall clock time and date at job start Wed Apr 1 2020 04:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36084 * 126.30629 * 2 1 4 4 N 1.30064 * 110.13153 * 180.02562 * 3 2 1 5 5 C 1.35864 * 109.56069 * 359.97438 * 4 3 2 6 6 C 1.39408 * 133.52489 * 180.02562 * 5 4 3 7 7 C 1.39125 * 119.50990 * 180.02562 * 6 5 4 8 8 C 1.47682 * 119.89694 * 180.02562 * 7 6 5 9 9 O 1.21573 * 120.00145 * 322.61163 * 8 7 6 10 10 N 1.34782 * 119.99695 * 142.61545 * 8 7 6 11 11 C 1.46920 * 120.63067 * 353.62428 * 10 8 7 12 12 C 1.53190 * 108.77793 * 233.62767 * 11 10 8 13 13 C 1.53038 * 109.31373 * 305.36891 * 12 11 10 14 14 C 1.53043 * 109.53754 * 61.35800 * 13 12 11 15 15 C 1.46997 * 120.61191 * 173.64299 * 10 8 7 16 16 H 1.09000 * 109.58007 * 246.14935 * 15 10 8 17 17 C 1.52999 * 109.63227 * 6.60058 * 15 10 8 18 18 N 1.46504 * 109.47101 * 290.22380 * 17 15 10 19 19 C 1.36935 * 119.99956 * 185.24411 * 18 17 15 20 20 H 1.08005 * 119.99912 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99706 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00173 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99650 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47142 * 59.99826 * 23 21 19 25 25 H 1.48503 * 109.46992 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46890 * 299.99748 * 23 21 19 27 27 C 1.40132 * 120.19583 * 0.26638 * 7 6 5 28 28 C 1.36433 * 120.45702 * 359.44819 * 27 7 6 29 29 C 1.37797 * 126.30279 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.46964 * 89.97745 * 1 2 3 31 31 H 1.09002 * 109.47483 * 209.98118 * 1 2 3 32 32 H 1.09001 * 109.47004 * 329.97366 * 1 2 3 33 33 H 1.08004 * 124.93764 * 0.05240 * 3 2 1 34 34 H 1.07995 * 120.24398 * 359.97438 * 6 5 4 35 35 H 1.09006 * 109.58616 * 113.83879 * 11 10 8 36 36 H 1.09002 * 109.58723 * 353.42091 * 11 10 8 37 37 H 1.09002 * 109.50306 * 185.41246 * 12 11 10 38 38 H 1.09003 * 109.49349 * 65.31693 * 12 11 10 39 39 H 1.09002 * 109.45632 * 301.33907 * 13 12 11 40 40 H 1.08995 * 109.44746 * 181.37607 * 13 12 11 41 41 H 1.09000 * 109.49436 * 58.59080 * 14 13 12 42 42 H 1.09001 * 109.49501 * 178.65073 * 14 13 12 43 43 H 1.09007 * 109.46854 * 50.21867 * 17 15 10 44 44 H 1.08995 * 109.47396 * 170.21854 * 17 15 10 45 45 H 0.96999 * 119.99821 * 5.24442 * 18 17 15 46 46 H 0.96998 * 120.00114 * 179.97438 * 22 21 19 47 47 H 1.08001 * 119.76959 * 179.72566 * 27 7 6 48 48 H 1.07996 * 119.93037 * 180.25050 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2708 1.0967 0.0000 4 7 3.5199 0.7343 -0.0005 5 6 3.6002 -0.6219 -0.0004 6 6 4.6659 -1.5206 -0.0003 7 6 4.4093 -2.8880 -0.0006 8 6 5.5318 -3.8476 0.0000 9 8 6.5379 -3.6067 -0.6385 10 7 5.4409 -4.9906 0.7086 11 6 4.2940 -5.2330 1.5943 12 6 4.8153 -5.5763 2.9933 13 6 5.7929 -6.7496 2.8953 14 6 6.9837 -6.3520 2.0201 15 6 6.4877 -6.0178 0.6098 16 1 6.0772 -6.9142 0.1449 17 6 7.6508 -5.4873 -0.2307 18 7 7.2302 -5.3727 -1.6294 19 6 8.1389 -5.0191 -2.5908 20 1 9.1658 -4.8250 -2.3181 21 6 7.7404 -4.9110 -3.9161 22 7 6.4894 -5.1489 -4.2487 23 14 8.9802 -4.4292 -5.2278 24 1 10.0771 -5.4296 -5.2633 25 1 8.3083 -4.3848 -6.5514 26 1 9.5407 -3.0910 -4.9114 27 6 3.0889 -3.3573 -0.0067 28 6 2.0434 -2.4808 -0.0010 29 6 2.2808 -1.1105 -0.0005 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3634 -0.8901 0.5135 32 1 -0.3633 0.8898 0.5143 33 1 1.9235 2.1193 0.0008 34 1 5.6832 -1.1580 -0.0008 35 1 3.7046 -6.0653 1.2095 36 1 3.6753 -4.3370 1.6445 37 1 3.9790 -5.8521 3.6357 38 1 5.3271 -4.7104 3.4133 39 1 5.2871 -7.6076 2.4524 40 1 6.1464 -7.0116 3.8925 41 1 7.4751 -5.4789 2.4494 42 1 7.6911 -7.1798 1.9704 43 1 7.9496 -4.5068 0.1403 44 1 8.4936 -6.1749 -0.1599 45 1 6.3081 -5.5473 -1.8744 46 1 6.2109 -5.0730 -5.1747 47 1 2.8976 -4.4202 -0.0114 48 1 1.0292 -2.8519 -0.0016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714130344.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:17 Heat of formation + Delta-G solvation = 78.918487 kcal Electronic energy + Delta-G solvation = -30781.142779 eV Core-core repulsion = 26838.059780 eV Total energy + Delta-G solvation = -3943.082998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.15408 -41.54493 -38.56875 -37.89592 -36.19857 -35.24108 -33.86654 -33.60587 -31.55711 -31.54181 -30.39259 -28.03508 -27.56245 -25.98147 -24.87783 -24.36968 -23.56854 -22.71242 -21.68001 -21.55081 -20.28130 -19.21044 -18.41848 -18.09086 -17.23008 -16.85558 -16.70155 -16.62650 -16.21767 -15.94396 -15.48950 -15.23567 -15.11264 -15.08923 -14.89479 -14.78358 -14.28531 -14.14393 -13.97787 -13.75168 -13.62406 -13.47494 -13.32519 -13.09557 -12.82445 -12.76480 -12.64192 -12.44965 -12.16371 -12.02657 -11.83731 -11.68694 -11.42395 -11.34837 -11.30938 -11.01845 -10.88141 -9.95254 -9.48141 -9.32080 -9.13440 -8.63545 -7.84482 -5.03209 -0.10007 0.13572 1.40540 1.46537 1.51308 1.70166 1.79220 2.07287 2.13227 2.60935 2.83360 3.28100 3.48523 3.57238 3.70565 3.85779 3.89720 3.91953 4.03707 4.06447 4.17208 4.29821 4.36956 4.38396 4.41821 4.48438 4.51607 4.53804 4.63426 4.68822 4.78245 4.79864 4.89771 5.00270 5.02626 5.08665 5.15003 5.18047 5.27036 5.29961 5.33838 5.38045 5.39709 5.50625 5.56159 5.73415 5.89732 6.21280 6.37088 6.65385 6.85023 7.42653 7.54568 8.23534 8.46746 9.40253 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.008606 B = 0.004317 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.654487 B = 6484.309826 C = 8931.188335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.490 5.490 3 C 0.272 3.728 4 N -0.547 5.547 5 C 0.010 3.990 6 C -0.040 4.040 7 C -0.134 4.134 8 C 0.520 3.480 9 O -0.510 6.510 10 N -0.605 5.605 11 C 0.093 3.907 12 C -0.129 4.129 13 C -0.111 4.111 14 C -0.120 4.120 15 C 0.148 3.852 16 H 0.068 0.932 17 C 0.160 3.840 18 N -0.705 5.705 19 C -0.214 4.214 20 H 0.060 0.940 21 C -0.083 4.083 22 N -0.972 5.972 23 Si 0.966 3.034 24 H -0.274 1.274 25 H -0.293 1.293 26 H -0.291 1.291 27 C -0.078 4.078 28 C -0.099 4.099 29 C 0.055 3.945 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.263 0.737 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.019 0.981 44 H 0.014 0.986 45 H 0.367 0.633 46 H 0.245 0.755 47 H 0.157 0.843 48 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.438 4.721 19.478 28.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.180 5.180 3 C -0.014 4.014 4 N -0.266 5.266 5 C -0.107 4.107 6 C -0.061 4.061 7 C -0.139 4.139 8 C 0.307 3.693 9 O -0.384 6.384 10 N -0.341 5.341 11 C -0.029 4.029 12 C -0.167 4.167 13 C -0.149 4.149 14 C -0.159 4.159 15 C 0.045 3.955 16 H 0.086 0.914 17 C 0.034 3.966 18 N -0.345 5.345 19 C -0.347 4.347 20 H 0.078 0.922 21 C -0.274 4.274 22 N -0.625 5.625 23 Si 0.796 3.204 24 H -0.200 1.200 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.098 4.098 28 C -0.119 4.119 29 C -0.057 4.057 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.139 0.861 33 H 0.279 0.721 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.037 0.963 44 H 0.032 0.968 45 H 0.199 0.801 46 H 0.053 0.947 47 H 0.175 0.825 48 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -19.158 5.428 19.081 27.578 hybrid contribution 0.360 0.109 -1.426 1.475 sum -18.798 5.537 17.655 26.376 Atomic orbital electron populations 1.22417 0.72584 1.06973 1.04947 1.45590 1.09110 1.04087 1.59179 1.26312 0.83990 0.95220 0.95878 1.70411 1.21326 1.10833 1.24058 1.18973 0.92985 0.90833 1.07887 1.20146 0.97282 0.91175 0.97450 1.19721 0.94763 0.92494 1.06953 1.18679 0.87654 0.82801 0.80118 1.91150 1.31167 1.74907 1.41145 1.47853 1.24190 1.17040 1.45035 1.22357 0.87587 1.03036 0.89878 1.21925 1.00368 0.98523 0.95868 1.21498 0.95126 0.98192 1.00070 1.21870 0.99308 1.01732 0.92988 1.21399 0.87582 0.89848 0.96658 0.91416 1.20962 0.94571 0.96462 0.84629 1.42278 1.08998 1.81120 1.02107 1.19453 0.91557 1.35200 0.88457 0.92230 1.25357 0.98056 1.04939 0.99077 1.69804 1.16867 1.59242 1.16631 0.85306 0.78509 0.77933 0.78676 1.20045 1.21885 1.21854 1.21043 0.89651 1.01159 0.97947 1.19910 1.00991 0.87598 1.03415 1.19177 0.90562 0.90871 1.05059 0.89709 0.88367 0.86129 0.72127 0.88091 0.89769 0.88265 0.87751 0.92807 0.90762 0.89792 0.92622 0.89886 0.96318 0.96806 0.80130 0.94663 0.82542 0.81333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 11.17 127.77 1.43 1.78 16 2 N -0.49 -8.39 3.20 -543.46 -1.74 -10.12 16 3 C 0.27 5.18 12.50 180.05 2.25 7.43 16 4 N -0.55 -17.23 11.28 -192.08 -2.17 -19.39 16 5 C 0.01 0.36 7.22 39.40 0.28 0.64 16 6 C -0.04 -1.59 9.66 22.76 0.22 -1.37 16 7 C -0.13 -4.95 5.20 -20.11 -0.10 -5.06 16 8 C 0.52 22.30 6.73 86.74 0.58 22.88 16 9 O -0.51 -28.07 10.72 -3.95 -0.04 -28.12 16 10 N -0.61 -20.42 2.97 -798.42 -2.37 -22.80 16 11 C 0.09 2.04 4.80 86.36 0.41 2.45 16 12 C -0.13 -2.23 6.08 30.67 0.19 -2.04 16 13 C -0.11 -1.99 5.88 30.62 0.18 -1.81 16 14 C -0.12 -3.10 5.36 30.67 0.16 -2.93 16 15 C 0.15 5.23 2.93 44.96 0.13 5.37 16 16 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 17 C 0.16 7.59 4.87 86.38 0.42 8.01 16 18 N -0.70 -41.06 3.25 -343.44 -1.12 -42.18 16 19 C -0.21 -13.72 9.74 84.03 0.82 -12.90 16 20 H 0.06 3.77 7.83 -2.91 -0.02 3.74 16 21 C -0.08 -5.39 5.50 84.86 0.47 -4.92 16 22 N -0.97 -65.69 13.06 21.65 0.28 -65.41 16 23 Si 0.97 52.11 29.55 68.60 2.03 54.14 16 24 H -0.27 -13.97 7.11 99.48 0.71 -13.27 16 25 H -0.29 -15.59 7.11 99.48 0.71 -14.88 16 26 H -0.29 -15.66 7.11 99.48 0.71 -14.96 16 27 C -0.08 -2.12 7.28 22.31 0.16 -1.96 16 28 C -0.10 -2.16 9.97 22.05 0.22 -1.94 16 29 C 0.05 1.40 6.87 39.00 0.27 1.66 16 30 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.26 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.10 4.52 8.02 -2.91 -0.02 4.50 16 35 H 0.08 1.54 8.06 -2.38 -0.02 1.52 16 36 H 0.10 2.05 4.64 -2.39 -0.01 2.04 16 37 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.02 1.00 6.26 -2.38 -0.01 0.99 16 44 H 0.01 0.66 8.12 -2.39 -0.02 0.64 16 45 H 0.37 22.64 7.09 -92.71 -0.66 21.98 16 46 H 0.24 16.02 8.31 -92.71 -0.77 15.25 16 47 H 0.16 3.55 6.30 -2.91 -0.02 3.53 16 48 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -96.03 379.28 3.29 -92.75 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.32 Total: 25.84 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 8.09 Total: 15.28 kcal Atomic # 7 Polarization: -152.78 SS G_CDS: -7.11 Total: -159.90 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.04 Total: -28.12 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 2.03 Total: 54.14 kcal Total: -96.03 3.29 -92.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714130344.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.666 kcal (2) G-P(sol) polarization free energy of solvation -96.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds