Wall clock time and date at job start Wed Apr 1 2020 01:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47001 * 2 1 4 4 C 1.34779 * 119.99736 * 90.00311 * 3 2 1 5 5 O 1.21283 * 119.99990 * 179.97438 * 4 3 2 6 6 C 1.50702 * 120.00029 * 0.02562 * 4 3 2 7 7 C 1.50701 * 109.47312 * 179.97438 * 6 4 3 8 8 N 1.30243 * 126.10647 * 269.97837 * 7 6 4 9 9 N 1.39870 * 110.08374 * 180.02562 * 8 7 6 10 10 H 0.97002 * 125.46443 * 180.02562 * 9 8 7 11 11 C 1.37039 * 109.07877 * 359.97438 * 9 8 7 12 12 C 1.39287 * 133.84790 * 179.97438 * 11 9 8 13 13 C 1.36581 * 119.85427 * 180.02562 * 12 11 9 14 14 C 1.38969 * 120.81438 * 0.25548 * 13 12 11 15 15 C 1.36469 * 120.62722 * 359.46015 * 14 13 12 16 16 C 1.39944 * 119.63513 * 0.55535 * 15 14 13 17 17 C 1.46494 * 120.00468 * 270.00231 * 3 2 1 18 18 H 1.09001 * 110.63793 * 359.29889 * 17 3 2 19 19 C 1.55153 * 110.72375 * 122.44081 * 17 3 2 20 20 C 1.55124 * 101.48777 * 153.73535 * 19 17 3 21 21 N 1.47423 * 104.94218 * 323.22357 * 20 19 17 22 22 C 1.36929 * 125.64801 * 204.03771 * 21 20 19 23 23 H 1.08004 * 120.00019 * 161.47484 * 22 21 20 24 24 C 1.38812 * 120.00188 * 341.47300 * 22 21 20 25 25 N 1.31619 * 120.00418 * 157.61951 * 24 22 21 26 26 Si 1.86796 * 119.99967 * 337.62335 * 24 22 21 27 27 H 1.48501 * 109.47321 * 84.53286 * 26 24 22 28 28 H 1.48502 * 109.47396 * 204.53461 * 26 24 22 29 29 H 1.48501 * 109.47279 * 324.53246 * 26 24 22 30 30 C 1.47022 * 108.70420 * 24.00372 * 21 20 19 31 31 H 1.08998 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46867 * 299.99372 * 1 2 3 33 33 H 1.09002 * 109.47307 * 59.99417 * 1 2 3 34 34 H 1.08997 * 109.46808 * 240.00338 * 2 1 3 35 35 H 1.09002 * 109.47307 * 120.00583 * 2 1 3 36 36 H 1.09005 * 109.47235 * 59.99965 * 6 4 3 37 37 H 1.09003 * 109.47063 * 299.99704 * 6 4 3 38 38 H 1.08004 * 120.06854 * 0.05312 * 12 11 9 39 39 H 1.08004 * 119.59499 * 179.97438 * 13 12 11 40 40 H 1.08003 * 119.68625 * 179.74449 * 14 13 12 41 41 H 1.07995 * 120.18028 * 180.23120 * 15 14 13 42 42 H 1.08997 * 111.00652 * 271.94562 * 19 17 3 43 43 H 1.09007 * 110.99996 * 35.79077 * 19 17 3 44 44 H 1.09002 * 110.41490 * 204.29319 * 20 19 17 45 45 H 1.08997 * 110.29998 * 82.09311 * 20 19 17 46 46 H 0.96995 * 120.00215 * 180.02562 * 25 24 22 47 47 H 1.08995 * 109.88308 * 239.52493 * 30 21 20 48 48 H 1.09001 * 109.88259 * 118.35442 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0165 1.1673 5 8 2.6476 3.1598 1.1673 6 6 1.9924 1.3058 2.4723 7 6 2.3193 2.2289 3.6179 8 7 3.4778 2.3479 4.2010 9 7 3.4054 3.2997 5.2234 10 1 4.1395 3.5633 5.8000 11 6 2.1312 3.8011 5.2791 12 6 1.5019 4.7499 6.0815 13 6 0.1815 5.0385 5.8848 14 6 -0.5486 4.3924 4.8945 15 6 0.0428 3.4625 4.0896 16 6 1.3945 3.1491 4.2716 17 6 2.2624 2.0719 -1.2686 18 1 2.0438 1.4161 -2.1114 19 6 1.4240 3.3745 -1.3547 20 6 2.2827 4.2313 -2.3216 21 7 3.6794 3.9118 -1.9742 22 6 4.7630 4.7167 -2.2038 23 1 5.6836 4.5499 -1.6641 24 6 4.6785 5.7469 -3.1302 25 7 5.5044 6.7690 -3.0551 26 14 3.3925 5.6830 -4.4835 27 1 2.1059 6.2175 -3.9695 28 1 3.8447 6.5039 -5.6354 29 1 3.2045 4.2766 -4.9216 30 6 3.7158 2.5860 -1.3396 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.6230 0.4185 2.5298 37 1 0.9445 1.0113 2.5303 38 1 2.0570 5.2566 6.8571 39 1 -0.3024 5.7747 6.5097 40 1 -1.5928 4.6318 4.7576 41 1 -0.5305 2.9675 3.3198 42 1 0.4375 3.1773 -1.7743 43 1 1.3430 3.8523 -0.3783 44 1 2.0863 5.2922 -2.1660 45 1 2.0765 3.9558 -3.3558 46 1 5.4451 7.4891 -3.7023 47 1 4.1297 2.6674 -0.3346 48 1 4.3211 1.9051 -1.9381 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715047756.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:35 Heat of formation + Delta-G solvation = 93.138272 kcal Electronic energy + Delta-G solvation = -30513.151924 eV Core-core repulsion = 26570.685542 eV Total energy + Delta-G solvation = -3942.466382 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.41071 -40.09911 -37.36305 -36.99029 -35.61609 -33.47867 -32.32709 -30.68338 -30.52920 -29.86178 -29.32259 -28.57123 -27.26896 -24.18943 -23.52509 -23.13306 -22.29728 -21.56334 -20.71879 -19.96065 -18.49555 -17.95005 -17.09182 -17.00408 -16.77237 -15.95535 -15.37298 -15.22653 -15.02949 -14.87352 -14.39114 -14.22052 -14.03028 -13.89529 -13.50423 -13.46457 -13.23627 -13.06222 -12.70275 -12.55838 -12.11889 -12.07639 -11.98580 -11.87581 -11.65658 -11.32156 -11.21255 -11.14631 -10.97455 -10.86272 -10.80713 -10.74419 -10.28445 -10.00226 -9.91802 -9.38965 -9.17701 -8.76277 -8.55562 -8.39473 -8.08269 -6.86319 -5.80543 -3.08438 0.84553 1.41191 2.28602 2.59445 2.82710 3.11973 3.44402 3.55135 3.58510 3.69388 4.24959 4.41230 4.55121 4.56925 4.67237 4.76971 4.84465 4.98967 5.04658 5.11305 5.17368 5.19523 5.24388 5.26720 5.35717 5.44880 5.46157 5.49797 5.59673 5.61572 5.67299 5.70250 5.83836 5.96915 6.00623 6.16050 6.20193 6.31917 6.38948 6.39178 6.44479 6.65687 6.73532 6.76186 6.96065 7.11938 7.21225 7.52582 7.54823 7.87777 8.42033 8.45767 8.98981 9.83684 10.33715 11.36265 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.011155 B = 0.003553 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.480868 B = 7877.775770 C = 8956.792626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.102 3.898 3 N -0.607 5.607 4 C 0.511 3.489 5 O -0.493 6.493 6 C -0.062 4.062 7 C 0.123 3.877 8 N -0.234 5.234 9 N -0.507 5.507 10 H 0.440 0.560 11 C 0.130 3.870 12 C -0.143 4.143 13 C -0.071 4.071 14 C -0.162 4.162 15 C -0.036 4.036 16 C -0.163 4.163 17 C 0.137 3.863 18 H 0.092 0.908 19 C -0.141 4.141 20 C 0.117 3.883 21 N -0.600 5.600 22 C -0.230 4.230 23 H 0.089 0.911 24 C 0.018 3.982 25 N -0.912 5.912 26 Si 0.884 3.116 27 H -0.286 1.286 28 H -0.304 1.304 29 H -0.278 1.278 30 C 0.132 3.868 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.060 0.940 43 H 0.088 0.912 44 H 0.058 0.942 45 H 0.022 0.978 46 H 0.261 0.739 47 H 0.048 0.952 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.389 -14.878 17.128 27.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.021 4.021 3 N -0.342 5.342 4 C 0.296 3.704 5 O -0.366 6.366 6 C -0.104 4.104 7 C -0.056 4.056 8 N -0.048 5.048 9 N -0.221 5.221 10 H 0.284 0.716 11 C 0.014 3.986 12 C -0.165 4.165 13 C -0.092 4.092 14 C -0.181 4.181 15 C -0.057 4.057 16 C -0.170 4.170 17 C 0.033 3.967 18 H 0.110 0.890 19 C -0.180 4.180 20 C -0.009 4.009 21 N -0.327 5.327 22 C -0.358 4.358 23 H 0.106 0.894 24 C -0.179 4.179 25 N -0.557 5.557 26 Si 0.714 3.286 27 H -0.213 1.213 28 H -0.232 1.232 29 H -0.204 1.204 30 C 0.005 3.995 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.079 0.921 43 H 0.106 0.894 44 H 0.076 0.924 45 H 0.039 0.961 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -13.755 -14.462 17.095 26.279 hybrid contribution -1.007 0.500 -0.620 1.284 sum -14.762 -13.962 16.475 26.159 Atomic orbital electron populations 1.22248 0.95957 1.02084 1.02794 1.21608 0.94405 0.82688 1.03394 1.47955 1.66593 1.13864 1.05738 1.20177 0.78663 0.87149 0.84441 1.90877 1.42107 1.16939 1.86629 1.20145 1.04426 0.97241 0.88595 1.22637 0.89804 0.96861 0.96284 1.76513 1.20759 1.07186 1.00366 1.45832 1.09112 1.35689 1.31487 0.71567 1.18835 0.86108 0.96446 0.97193 1.19815 0.95479 0.99638 1.01596 1.20697 0.93166 0.98158 0.97161 1.20639 1.00420 0.99228 0.97847 1.20318 0.91957 0.96000 0.97381 1.19680 0.95486 1.02036 0.99846 1.22146 0.97196 0.93542 0.83792 0.88993 1.23164 0.96952 0.95939 1.01973 1.21900 0.85414 0.98553 0.95025 1.44521 1.01976 1.15393 1.70821 1.18628 0.91758 1.07824 1.17549 0.89368 1.24961 0.97510 0.96412 0.99055 1.69862 1.40483 1.08299 1.37037 0.86940 0.81387 0.77065 0.83174 1.21320 1.23208 1.20360 1.21574 0.92715 0.87364 0.97802 0.91593 0.92433 0.92001 0.90083 0.90370 0.87053 0.86933 0.85756 0.85445 0.85669 0.85781 0.92134 0.89382 0.92422 0.96061 0.92909 0.93408 0.95665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.24 37.16 0.38 -0.78 16 2 C 0.10 0.83 5.92 -4.04 -0.02 0.81 16 3 N -0.61 -7.99 2.54 -164.03 -0.42 -8.40 16 4 C 0.51 7.72 6.77 -10.98 -0.07 7.64 16 5 O -0.49 -10.28 12.39 5.56 0.07 -10.21 16 6 C -0.06 -0.69 4.85 -29.03 -0.14 -0.83 16 7 C 0.12 1.73 5.93 -80.19 -0.48 1.25 16 8 N -0.23 -3.56 12.55 34.84 0.44 -3.12 16 9 N -0.51 -6.60 7.37 32.36 0.24 -6.37 16 10 H 0.44 4.31 8.96 -182.77 -1.64 2.67 16 11 C 0.13 1.70 7.34 -84.17 -0.62 1.08 16 12 C -0.14 -1.51 10.03 -39.79 -0.40 -1.91 16 13 C -0.07 -0.67 9.96 -39.91 -0.40 -1.07 16 14 C -0.16 -1.59 9.97 -39.95 -0.40 -1.99 16 15 C -0.04 -0.41 10.07 -39.58 -0.40 -0.81 16 16 C -0.16 -2.21 6.33 -105.21 -0.67 -2.88 16 17 C 0.14 2.27 3.43 -66.10 -0.23 2.05 16 18 H 0.09 1.32 7.86 -51.93 -0.41 0.91 16 19 C -0.14 -2.62 6.44 -24.47 -0.16 -2.78 16 20 C 0.12 2.75 4.70 -2.41 -0.01 2.74 16 21 N -0.60 -15.89 3.21 -169.94 -0.54 -16.43 16 22 C -0.23 -7.09 10.57 -15.06 -0.16 -7.24 16 23 H 0.09 2.90 8.06 -52.48 -0.42 2.48 16 24 C 0.02 0.57 5.43 -17.43 -0.09 0.47 16 25 N -0.91 -29.81 13.97 55.49 0.78 -29.03 16 26 Si 0.88 23.75 24.27 -169.99 -4.13 19.63 16 27 H -0.29 -7.44 6.49 56.52 0.37 -7.07 16 28 H -0.30 -8.20 7.11 56.52 0.40 -7.80 16 29 H -0.28 -7.25 6.66 56.52 0.38 -6.88 16 30 C 0.13 2.88 6.48 -3.06 -0.02 2.86 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.38 7.22 -51.93 -0.38 0.00 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.60 7.94 -51.93 -0.41 0.19 16 35 H 0.08 0.47 6.44 -51.93 -0.33 0.14 16 36 H 0.11 0.99 7.40 -51.93 -0.38 0.60 16 37 H 0.11 0.86 7.19 -51.93 -0.37 0.48 16 38 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 39 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 40 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 41 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.09 1.80 6.04 -51.93 -0.31 1.49 16 44 H 0.06 1.48 6.64 -51.93 -0.34 1.14 16 45 H 0.02 0.51 5.57 -51.93 -0.29 0.22 16 46 H 0.26 8.06 8.31 -40.82 -0.34 7.72 16 47 H 0.05 1.15 6.07 -51.93 -0.32 0.83 16 48 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 379.48 15.07 5.72 5.72 Total: -1.00 -39.75 379.48 -9.92 -49.67 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -8.19 Total: -0.07 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -3.88 Total: -1.37 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: 0.49 Total: -63.36 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.07 Total: -10.21 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -4.13 Total: 19.63 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -39.75 -9.92 -49.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715047756.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.806 kcal (2) G-P(sol) polarization free energy of solvation -39.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds