Wall clock time and date at job start Wed Apr 1 2020 04:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28387 * 124.36657 * 2 1 4 4 C 1.31574 * 111.95923 * 179.97438 * 3 2 1 5 5 C 1.47397 * 126.81867 * 179.97438 * 4 3 2 6 6 O 1.21612 * 119.99636 * 180.02562 * 5 4 3 7 7 N 1.34776 * 119.99799 * 0.02562 * 5 4 3 8 8 C 1.46508 * 119.99573 * 174.90548 * 7 5 4 9 9 C 1.52998 * 110.01736 * 65.17568 * 8 7 5 10 10 N 1.46505 * 109.47095 * 55.17937 * 9 8 7 11 11 C 1.36936 * 120.00319 * 174.90590 * 10 9 8 12 12 H 1.08002 * 119.99622 * 359.97438 * 11 10 9 13 13 C 1.38807 * 120.00086 * 179.97438 * 11 10 9 14 14 N 1.31612 * 120.00178 * 359.72931 * 13 11 10 15 15 Si 1.86804 * 120.00008 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46816 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47357 * 120.00084 * 15 13 11 18 18 H 1.48495 * 109.47123 * 240.00471 * 15 13 11 19 19 C 1.54257 * 110.07216 * 186.59419 * 8 7 5 20 20 C 1.54886 * 104.19795 * 95.69526 * 19 8 7 21 21 C 1.54893 * 102.74625 * 37.94520 * 20 19 8 22 22 C 1.53874 * 110.03424 * 303.78619 * 8 7 5 23 23 C 1.46882 * 106.35869 * 0.22347 * 4 3 2 24 24 C 1.39193 * 135.56232 * 180.43183 * 23 4 3 25 25 C 1.36712 * 119.50830 * 179.59920 * 24 23 4 26 26 C 1.38903 * 120.52476 * 359.78453 * 25 24 23 27 27 C 1.36679 * 120.89466 * 359.97438 * 26 25 24 28 28 C 1.37048 * 124.37309 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47118 * 90.02737 * 1 2 3 30 30 H 1.09004 * 109.47214 * 210.02660 * 1 2 3 31 31 H 1.09000 * 109.47269 * 330.02639 * 1 2 3 32 32 H 0.96993 * 120.00337 * 354.91084 * 7 5 4 33 33 H 1.09005 * 109.47310 * 295.18150 * 9 8 7 34 34 H 1.08990 * 109.47254 * 175.17847 * 9 8 7 35 35 H 0.97006 * 119.99747 * 354.90886 * 10 9 8 36 36 H 0.97007 * 120.00090 * 179.97438 * 14 13 11 37 37 H 1.08998 * 110.48720 * 214.37628 * 19 8 7 38 38 H 1.09008 * 110.49204 * 337.01953 * 19 8 7 39 39 H 1.08999 * 110.76039 * 279.62578 * 20 19 8 40 40 H 1.09003 * 110.76040 * 156.25627 * 20 19 8 41 41 H 1.08998 * 110.48461 * 203.37816 * 21 20 19 42 42 H 1.08995 * 110.48774 * 80.73388 * 21 20 19 43 43 H 1.09005 * 110.03083 * 359.94883 * 22 8 7 44 44 H 1.08996 * 110.03535 * 121.38106 * 22 8 7 45 45 H 1.07998 * 120.24577 * 359.34071 * 24 23 4 46 46 H 1.08005 * 119.73989 * 179.76167 * 25 24 23 47 47 H 1.08005 * 119.54925 * 179.97438 * 26 25 24 48 48 H 1.08001 * 120.10571 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1897 1.0598 0.0000 4 6 3.4747 0.7771 0.0005 5 6 4.5909 1.7397 0.0002 6 8 5.7392 1.3391 0.0003 7 7 4.3390 3.0637 -0.0003 8 6 5.4436 4.0195 0.1120 9 6 6.3452 3.9252 -1.1204 10 7 5.5408 4.1171 -2.3298 11 6 6.1499 4.1786 -3.5547 12 1 7.2234 4.0859 -3.6292 13 6 5.3877 4.3599 -4.7005 14 7 4.0791 4.4675 -4.6102 15 14 6.2186 4.4430 -6.3715 16 1 7.6860 4.2892 -6.2029 17 1 5.7030 3.3510 -7.2356 18 1 5.9275 5.7545 -7.0044 19 6 4.8911 5.4528 0.2541 20 6 4.8764 5.7045 1.7823 21 6 6.1745 5.0050 2.2564 22 6 6.2597 3.7348 1.3851 23 6 3.5759 -0.6883 -0.0045 24 6 4.6166 -1.6126 0.0008 25 6 4.3299 -2.9493 0.0011 26 6 3.0121 -3.3883 0.0008 27 6 1.9756 -2.4973 0.0006 28 6 2.2387 -1.1312 0.0005 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8898 0.5143 31 1 -0.3634 0.8902 0.5134 32 1 3.4264 3.3837 -0.0749 33 1 6.8179 2.9434 -1.1506 34 1 7.1132 4.6967 -1.0687 35 1 4.5767 4.2008 -2.2628 36 1 3.5465 4.5946 -5.4110 37 1 5.5480 6.1659 -0.2437 38 1 3.8815 5.5146 -0.1524 39 1 4.0006 5.2456 2.2411 40 1 4.9120 6.7723 1.9983 41 1 6.1017 4.7400 3.3111 42 1 7.0388 5.6459 2.0819 43 1 5.8333 2.8860 1.9199 44 1 7.2980 3.5294 1.1249 45 1 5.6429 -1.2764 0.0004 46 1 5.1345 -3.6698 0.0014 47 1 2.8036 -4.4480 0.0007 48 1 0.9558 -2.8526 0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715102340.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:12 Heat of formation + Delta-G solvation = 68.615760 kcal Electronic energy + Delta-G solvation = -30452.536498 eV Core-core repulsion = 26509.006740 eV Total energy + Delta-G solvation = -3943.529758 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.42219 -39.84819 -37.79273 -37.34425 -34.21697 -33.66089 -32.94974 -30.94204 -30.59090 -30.10795 -28.59319 -28.23973 -26.92733 -24.44570 -23.77694 -22.60897 -22.10482 -21.95095 -20.61171 -19.89413 -18.82490 -17.80625 -17.17408 -16.97031 -16.30559 -16.03827 -15.77882 -15.28142 -14.93693 -14.39963 -14.28838 -14.21973 -14.10554 -13.90007 -13.42976 -13.19584 -13.09547 -12.94840 -12.85532 -12.60523 -12.02907 -11.99504 -11.80231 -11.48923 -11.22184 -11.09104 -10.90260 -10.82913 -10.80656 -10.77765 -10.61830 -10.38700 -10.33618 -9.94490 -9.93174 -9.62844 -9.50776 -8.77219 -8.73694 -8.48444 -7.95865 -6.75925 -5.65995 -2.91918 0.86941 1.35899 2.04507 2.33213 3.46696 3.49712 3.55391 3.56541 3.57725 3.91458 4.23710 4.39865 4.66504 4.74259 4.83694 4.90496 4.92541 4.93498 4.97396 5.11623 5.17265 5.19066 5.36122 5.52654 5.61977 5.64581 5.69757 5.73222 5.76763 5.87297 5.92012 5.98272 6.05198 6.11211 6.20534 6.28709 6.37122 6.42294 6.49172 6.51049 6.57894 6.62254 6.67687 6.69094 6.87242 7.01416 7.21792 7.79363 7.82000 8.07743 8.53379 8.67467 9.64818 10.24462 10.60155 11.57336 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.008274 B = 0.004066 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.321965 B = 6885.395305 C = 8534.205588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.321 5.321 3 N -0.209 5.209 4 C 0.012 3.988 5 C 0.612 3.388 6 O -0.524 6.524 7 N -0.695 5.695 8 C 0.170 3.830 9 C 0.145 3.855 10 N -0.726 5.726 11 C -0.228 4.228 12 H 0.069 0.931 13 C -0.017 4.017 14 N -0.936 5.936 15 Si 0.903 3.097 16 H -0.281 1.281 17 H -0.294 1.294 18 H -0.293 1.293 19 C -0.117 4.117 20 C -0.125 4.125 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.108 4.108 24 C -0.037 4.037 25 C -0.147 4.147 26 C -0.086 4.086 27 C -0.123 4.123 28 C 0.063 3.937 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.402 0.598 33 H 0.039 0.961 34 H 0.027 0.973 35 H 0.382 0.618 36 H 0.251 0.749 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.139 0.861 46 H 0.128 0.872 47 H 0.128 0.872 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.225 -10.307 16.525 20.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.114 5.114 3 N -0.038 5.038 4 C -0.159 4.159 5 C 0.395 3.605 6 O -0.398 6.398 7 N -0.346 5.346 8 C 0.084 3.916 9 C 0.017 3.983 10 N -0.370 5.370 11 C -0.359 4.359 12 H 0.087 0.913 13 C -0.212 4.212 14 N -0.585 5.585 15 Si 0.735 3.265 16 H -0.206 1.206 17 H -0.221 1.221 18 H -0.220 1.220 19 C -0.155 4.155 20 C -0.163 4.163 21 C -0.162 4.162 22 C -0.156 4.156 23 C -0.115 4.115 24 C -0.058 4.058 25 C -0.166 4.166 26 C -0.107 4.107 27 C -0.144 4.144 28 C -0.049 4.049 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.237 0.763 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.216 0.784 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.157 0.843 46 H 0.146 0.854 47 H 0.146 0.854 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.166 -9.669 16.414 20.353 hybrid contribution -0.179 -0.467 -1.270 1.365 sum -7.345 -10.135 15.144 19.647 Atomic orbital electron populations 1.22055 0.73303 1.04931 1.04261 1.45099 1.07053 1.00924 1.58282 1.72894 1.03953 1.13677 1.13264 1.22944 0.90318 0.92403 1.10188 1.16476 0.86131 0.81390 0.76470 1.90759 1.20266 1.78796 1.49930 1.45866 1.10569 1.04727 1.73460 1.21292 0.86858 0.87671 0.95770 1.21174 0.92845 0.99073 0.85256 1.42231 1.06132 1.87743 1.00929 1.19292 0.91872 1.40431 0.84353 0.91284 1.24673 0.95455 1.03507 0.97578 1.69668 1.03623 1.57703 1.27538 0.86149 0.78453 0.77033 0.84835 1.20596 1.22097 1.22037 1.22582 1.02163 0.95134 0.95614 1.22536 0.97740 1.00010 0.95996 1.22381 0.97985 0.96933 0.98855 1.22421 1.00932 0.97517 0.94751 1.19458 0.92960 0.91989 1.07115 1.20444 0.99032 0.91570 0.94718 1.20812 0.96672 0.95430 1.03710 1.20692 0.92292 0.99211 0.98495 1.19697 0.99908 0.88449 1.06345 1.19169 0.90689 0.90033 1.04963 0.90036 0.89189 0.88594 0.76298 0.94343 0.95521 0.78444 0.93865 0.89515 0.90954 0.91837 0.91672 0.92104 0.91556 0.91466 0.90767 0.84289 0.85410 0.85381 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 11.24 59.85 0.67 1.44 16 2 N -0.32 -4.33 3.74 -65.50 -0.24 -4.57 16 3 N -0.21 -3.39 11.53 34.46 0.40 -2.99 16 4 C 0.01 0.22 7.32 -80.75 -0.59 -0.37 16 5 C 0.61 11.82 6.85 -12.53 -0.09 11.73 16 6 O -0.52 -11.12 13.67 5.27 0.07 -11.05 16 7 N -0.70 -12.37 4.50 -47.64 -0.21 -12.59 16 8 C 0.17 2.97 0.57 -130.70 -0.07 2.89 16 9 C 0.14 3.19 4.64 -4.04 -0.02 3.17 16 10 N -0.73 -19.14 5.27 -59.91 -0.32 -19.45 16 11 C -0.23 -6.68 9.99 -15.06 -0.15 -6.83 16 12 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 13 C -0.02 -0.50 5.50 -17.44 -0.10 -0.60 16 14 N -0.94 -29.07 13.06 55.49 0.72 -28.34 16 15 Si 0.90 23.37 29.55 -169.99 -5.02 18.34 16 16 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 18 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 19 C -0.12 -1.81 5.74 -25.08 -0.14 -1.96 16 20 C -0.13 -1.54 6.91 -24.74 -0.17 -1.72 16 21 C -0.12 -1.53 6.83 -25.07 -0.17 -1.70 16 22 C -0.12 -1.80 5.22 -25.61 -0.13 -1.93 16 23 C -0.11 -1.78 6.34 -105.05 -0.67 -2.45 16 24 C -0.04 -0.55 9.87 -39.78 -0.39 -0.94 16 25 C -0.15 -1.68 9.98 -39.89 -0.40 -2.08 16 26 C -0.09 -0.86 9.96 -39.90 -0.40 -1.26 16 27 C -0.12 -1.32 9.94 -39.82 -0.40 -1.72 16 28 C 0.06 0.88 6.85 -84.21 -0.58 0.31 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.40 6.74 7.97 -40.82 -0.33 6.41 16 33 H 0.04 0.94 6.55 -51.93 -0.34 0.60 16 34 H 0.03 0.58 8.04 -51.93 -0.42 0.17 16 35 H 0.38 10.43 7.19 -40.82 -0.29 10.14 16 36 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.09 1.44 7.79 -51.93 -0.40 1.04 16 38 H 0.07 1.14 7.70 -51.92 -0.40 0.74 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.07 6.99 -51.93 -0.36 0.71 16 44 H 0.07 1.18 7.67 -51.93 -0.40 0.78 16 45 H 0.14 2.11 7.65 -52.49 -0.40 1.71 16 46 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 47 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 48 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 391.21 15.07 5.90 5.90 Total: -1.00 -35.77 391.21 -9.62 -45.39 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -7.12 Total: 13.39 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -3.79 Total: -4.03 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: 0.35 Total: -67.94 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.07 Total: -11.05 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.34 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.77 -9.62 -45.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715102340.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.004 kcal (2) G-P(sol) polarization free energy of solvation -35.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds