Wall clock time and date at job start Wed Apr 1 2020 04:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28387 * 124.36657 * 2 1 4 4 C 1.31574 * 111.95923 * 179.97438 * 3 2 1 5 5 C 1.47397 * 126.81867 * 179.97438 * 4 3 2 6 6 O 1.21612 * 119.99636 * 180.02562 * 5 4 3 7 7 N 1.34776 * 119.99799 * 0.02562 * 5 4 3 8 8 C 1.46508 * 119.99573 * 174.90548 * 7 5 4 9 9 C 1.52998 * 110.01736 * 65.17568 * 8 7 5 10 10 N 1.46505 * 109.47095 * 55.17937 * 9 8 7 11 11 C 1.36936 * 120.00319 * 174.90590 * 10 9 8 12 12 H 1.08002 * 119.99622 * 359.97438 * 11 10 9 13 13 C 1.38807 * 120.00086 * 179.97438 * 11 10 9 14 14 N 1.31612 * 120.00178 * 359.72931 * 13 11 10 15 15 Si 1.86804 * 120.00008 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46816 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47357 * 120.00084 * 15 13 11 18 18 H 1.48495 * 109.47123 * 240.00471 * 15 13 11 19 19 C 1.54257 * 110.07216 * 186.59419 * 8 7 5 20 20 C 1.54886 * 104.19795 * 95.69526 * 19 8 7 21 21 C 1.54893 * 102.74625 * 37.94520 * 20 19 8 22 22 C 1.53874 * 110.03424 * 303.78619 * 8 7 5 23 23 C 1.46882 * 106.35869 * 0.22347 * 4 3 2 24 24 C 1.39193 * 135.56232 * 180.43183 * 23 4 3 25 25 C 1.36712 * 119.50830 * 179.59920 * 24 23 4 26 26 C 1.38903 * 120.52476 * 359.78453 * 25 24 23 27 27 C 1.36679 * 120.89466 * 359.97438 * 26 25 24 28 28 C 1.37048 * 124.37309 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47118 * 90.02737 * 1 2 3 30 30 H 1.09004 * 109.47214 * 210.02660 * 1 2 3 31 31 H 1.09000 * 109.47269 * 330.02639 * 1 2 3 32 32 H 0.96993 * 120.00337 * 354.91084 * 7 5 4 33 33 H 1.09005 * 109.47310 * 295.18150 * 9 8 7 34 34 H 1.08990 * 109.47254 * 175.17847 * 9 8 7 35 35 H 0.97006 * 119.99747 * 354.90886 * 10 9 8 36 36 H 0.97007 * 120.00090 * 179.97438 * 14 13 11 37 37 H 1.08998 * 110.48720 * 214.37628 * 19 8 7 38 38 H 1.09008 * 110.49204 * 337.01953 * 19 8 7 39 39 H 1.08999 * 110.76039 * 279.62578 * 20 19 8 40 40 H 1.09003 * 110.76040 * 156.25627 * 20 19 8 41 41 H 1.08998 * 110.48461 * 203.37816 * 21 20 19 42 42 H 1.08995 * 110.48774 * 80.73388 * 21 20 19 43 43 H 1.09005 * 110.03083 * 359.94883 * 22 8 7 44 44 H 1.08996 * 110.03535 * 121.38106 * 22 8 7 45 45 H 1.07998 * 120.24577 * 359.34071 * 24 23 4 46 46 H 1.08005 * 119.73989 * 179.76167 * 25 24 23 47 47 H 1.08005 * 119.54925 * 179.97438 * 26 25 24 48 48 H 1.08001 * 120.10571 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1897 1.0598 0.0000 4 6 3.4747 0.7771 0.0005 5 6 4.5909 1.7397 0.0002 6 8 5.7392 1.3391 0.0003 7 7 4.3390 3.0637 -0.0003 8 6 5.4436 4.0195 0.1120 9 6 6.3452 3.9252 -1.1204 10 7 5.5408 4.1171 -2.3298 11 6 6.1499 4.1786 -3.5547 12 1 7.2234 4.0859 -3.6292 13 6 5.3877 4.3599 -4.7005 14 7 4.0791 4.4675 -4.6102 15 14 6.2186 4.4430 -6.3715 16 1 7.6860 4.2892 -6.2029 17 1 5.7030 3.3510 -7.2356 18 1 5.9275 5.7545 -7.0044 19 6 4.8911 5.4528 0.2541 20 6 4.8764 5.7045 1.7823 21 6 6.1745 5.0050 2.2564 22 6 6.2597 3.7348 1.3851 23 6 3.5759 -0.6883 -0.0045 24 6 4.6166 -1.6126 0.0008 25 6 4.3299 -2.9493 0.0011 26 6 3.0121 -3.3883 0.0008 27 6 1.9756 -2.4973 0.0006 28 6 2.2387 -1.1312 0.0005 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8898 0.5143 31 1 -0.3634 0.8902 0.5134 32 1 3.4264 3.3837 -0.0749 33 1 6.8179 2.9434 -1.1506 34 1 7.1132 4.6967 -1.0687 35 1 4.5767 4.2008 -2.2628 36 1 3.5465 4.5946 -5.4110 37 1 5.5480 6.1659 -0.2437 38 1 3.8815 5.5146 -0.1524 39 1 4.0006 5.2456 2.2411 40 1 4.9120 6.7723 1.9983 41 1 6.1017 4.7400 3.3111 42 1 7.0388 5.6459 2.0819 43 1 5.8333 2.8860 1.9199 44 1 7.2980 3.5294 1.1249 45 1 5.6429 -1.2764 0.0004 46 1 5.1345 -3.6698 0.0014 47 1 2.8036 -4.4480 0.0007 48 1 0.9558 -2.8526 0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715102340.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:11 Heat of formation + Delta-G solvation = 44.543640 kcal Electronic energy + Delta-G solvation = -30453.580344 eV Core-core repulsion = 26509.006740 eV Total energy + Delta-G solvation = -3944.573604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -43.49076 -41.27996 -38.76205 -38.72296 -36.18327 -34.82487 -34.29389 -32.97950 -31.52016 -31.12105 -29.94049 -29.64141 -28.03446 -26.30887 -24.88682 -24.04871 -23.60870 -23.00322 -21.77670 -21.09519 -20.29930 -19.15695 -18.96446 -18.15891 -17.36640 -17.27922 -17.08544 -16.51398 -16.19179 -16.18850 -15.63393 -15.56124 -15.29098 -15.06421 -15.02382 -14.64662 -14.57026 -14.09555 -13.92376 -13.56754 -13.54903 -13.23314 -12.92848 -12.86593 -12.85551 -12.67692 -12.29743 -12.18320 -12.16032 -12.03095 -11.93087 -11.91951 -11.78679 -11.73841 -11.40270 -11.14468 -10.98173 -10.80974 -9.99893 -9.77305 -8.97331 -8.96421 -7.96444 -5.23399 -0.20075 0.37159 0.88165 1.41656 1.42110 1.43732 1.53861 2.12370 2.30721 2.53644 2.81449 3.19341 3.36393 3.42607 3.50467 3.70252 3.75556 3.93216 4.07367 4.14641 4.17165 4.33065 4.37371 4.39219 4.43282 4.47729 4.51979 4.57552 4.63075 4.68033 4.76797 4.80749 4.85983 4.91859 5.01463 5.09055 5.10055 5.19300 5.22269 5.25086 5.34339 5.45135 5.45854 5.49394 5.56448 5.67586 5.74460 5.98837 6.25540 6.48516 6.80839 7.23042 7.32488 8.07674 8.35185 9.27123 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.008274 B = 0.004066 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.321965 B = 6885.395305 C = 8534.205588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.311 5.311 3 N -0.213 5.213 4 C -0.037 4.037 5 C 0.605 3.395 6 O -0.557 6.557 7 N -0.691 5.691 8 C 0.171 3.829 9 C 0.147 3.853 10 N -0.731 5.731 11 C -0.243 4.243 12 H 0.067 0.933 13 C -0.072 4.072 14 N -0.966 5.966 15 Si 0.971 3.029 16 H -0.270 1.270 17 H -0.295 1.295 18 H -0.286 1.286 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.115 4.115 22 C -0.112 4.112 23 C -0.140 4.140 24 C -0.078 4.078 25 C -0.132 4.132 26 C -0.082 4.082 27 C -0.111 4.111 28 C 0.048 3.952 29 H 0.091 0.909 30 H 0.127 0.873 31 H 0.106 0.894 32 H 0.405 0.595 33 H 0.010 0.990 34 H 0.030 0.970 35 H 0.375 0.625 36 H 0.250 0.750 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.115 0.885 46 H 0.154 0.846 47 H 0.174 0.826 48 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.023 -11.780 17.468 22.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.105 5.105 3 N -0.045 5.045 4 C -0.205 4.205 5 C 0.391 3.609 6 O -0.434 6.434 7 N -0.342 5.342 8 C 0.085 3.915 9 C 0.020 3.980 10 N -0.374 5.374 11 C -0.375 4.375 12 H 0.085 0.915 13 C -0.264 4.264 14 N -0.617 5.617 15 Si 0.800 3.200 16 H -0.195 1.195 17 H -0.223 1.223 18 H -0.213 1.213 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.153 4.153 22 C -0.151 4.151 23 C -0.148 4.148 24 C -0.098 4.098 25 C -0.151 4.151 26 C -0.102 4.102 27 C -0.132 4.132 28 C -0.064 4.064 29 H 0.109 0.891 30 H 0.145 0.855 31 H 0.124 0.876 32 H 0.241 0.759 33 H 0.028 0.972 34 H 0.048 0.952 35 H 0.207 0.793 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.133 0.867 46 H 0.172 0.828 47 H 0.191 0.809 48 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.954 -11.131 17.384 22.501 hybrid contribution 0.309 -0.169 -1.568 1.607 sum -8.645 -11.300 15.816 21.274 Atomic orbital electron populations 1.22565 0.70178 1.07383 1.05632 1.45639 1.08647 1.00247 1.56007 1.72789 1.03603 1.15113 1.12979 1.22767 0.90616 0.93189 1.13956 1.16827 0.86389 0.81948 0.75778 1.90714 1.21671 1.79385 1.51608 1.45850 1.10725 1.04497 1.73081 1.21297 0.86584 0.89103 0.94472 1.21221 0.93494 0.97296 0.86023 1.42321 1.06031 1.87515 1.01539 1.19634 0.92038 1.40032 0.85799 0.91489 1.25481 0.96140 1.03692 1.01126 1.69819 1.04883 1.58715 1.28310 0.85105 0.77963 0.76867 0.80053 1.19453 1.22277 1.21321 1.22539 1.01203 0.93117 0.98403 1.22495 0.98043 1.01579 0.92863 1.22371 0.98480 0.95107 0.99306 1.22348 0.99557 0.99080 0.94103 1.19772 0.95043 0.91549 1.08401 1.20457 0.97877 0.93241 0.98238 1.21207 0.98753 0.94198 1.00976 1.21228 0.91029 1.01382 0.96560 1.20266 1.02349 0.86669 1.03867 1.19561 0.89593 0.91453 1.05778 0.89096 0.85474 0.87578 0.75898 0.97228 0.95172 0.79267 0.94094 0.90716 0.91568 0.90889 0.89311 0.89875 0.90545 0.92382 0.91987 0.86703 0.82843 0.80890 0.81571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 11.24 127.77 1.44 2.53 16 2 N -0.31 -8.16 3.74 -361.14 -1.35 -9.51 16 3 N -0.21 -7.16 11.53 -44.88 -0.52 -7.68 16 4 C -0.04 -1.43 7.32 43.86 0.32 -1.11 16 5 C 0.61 25.48 6.85 86.66 0.59 26.07 16 6 O -0.56 -26.10 13.67 -4.07 -0.06 -26.15 16 7 N -0.69 -26.36 4.50 -422.89 -1.90 -28.26 16 8 C 0.17 6.30 0.57 4.32 0.00 6.30 16 9 C 0.15 6.90 4.64 86.38 0.40 7.30 16 10 N -0.73 -40.46 5.27 -343.45 -1.81 -42.28 16 11 C -0.24 -14.72 9.99 84.03 0.84 -13.88 16 12 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 13 C -0.07 -4.38 5.50 84.86 0.47 -3.92 16 14 N -0.97 -61.43 13.06 21.65 0.28 -61.15 16 15 Si 0.97 48.86 29.55 68.60 2.03 50.89 16 16 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 17 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 18 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 19 C -0.11 -3.61 5.74 31.66 0.18 -3.43 16 20 C -0.11 -2.59 6.91 31.89 0.22 -2.37 16 21 C -0.12 -2.69 6.83 31.67 0.22 -2.48 16 22 C -0.11 -3.56 5.22 31.32 0.16 -3.40 16 23 C -0.14 -4.87 6.34 -20.14 -0.13 -5.00 16 24 C -0.08 -2.43 9.87 22.14 0.22 -2.21 16 25 C -0.13 -2.86 9.98 22.07 0.22 -2.64 16 26 C -0.08 -1.33 9.96 22.06 0.22 -1.11 16 27 C -0.11 -1.98 9.94 22.12 0.22 -1.76 16 28 C 0.05 1.30 6.85 39.18 0.27 1.57 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.13 0.78 8.10 -2.39 -0.02 0.76 16 31 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.41 14.54 7.97 -92.71 -0.74 13.80 16 33 H 0.01 0.52 6.55 -2.38 -0.02 0.50 16 34 H 0.03 1.39 8.04 -2.39 -0.02 1.37 16 35 H 0.37 21.52 7.19 -92.70 -0.67 20.86 16 36 H 0.25 15.32 8.31 -92.70 -0.77 14.55 16 37 H 0.07 2.53 7.79 -2.39 -0.02 2.51 16 38 H 0.07 2.15 7.70 -2.38 -0.02 2.13 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 1.95 6.99 -2.38 -0.02 1.94 16 44 H 0.06 2.09 7.67 -2.39 -0.02 2.07 16 45 H 0.11 3.97 7.65 -2.91 -0.02 3.95 16 46 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 47 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 48 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -83.19 391.21 2.12 -81.07 By element: Atomic # 1 Polarization: 43.03 SS G_CDS: -0.41 Total: 42.62 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 5.86 Total: 0.46 kcal Atomic # 7 Polarization: -143.58 SS G_CDS: -5.30 Total: -148.88 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.06 Total: -26.15 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 2.03 Total: 50.89 kcal Total: -83.19 2.12 -81.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715102340.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.609 kcal (2) G-P(sol) polarization free energy of solvation -83.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds