Wall clock time and date at job start Wed Apr 1 2020 03:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.39869 * 125.45619 * 2 1 4 4 C 1.30246 * 110.08274 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.10609 * 180.25620 * 4 3 2 6 6 C 1.50699 * 109.47656 * 269.69241 * 5 4 3 7 7 O 1.21279 * 119.99833 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00301 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00045 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46826 * 180.19887 * 9 8 6 11 11 N 1.46506 * 112.84824 * 292.09761 * 10 9 8 12 12 C 1.36929 * 119.99966 * 294.86956 * 11 10 9 13 13 H 1.08002 * 120.00719 * 353.76570 * 12 11 10 14 14 C 1.38819 * 120.00145 * 173.77126 * 12 11 10 15 15 N 1.31618 * 119.99373 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00242 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47412 * 59.99920 * 16 14 12 18 18 H 1.48503 * 109.47168 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47128 * 299.99813 * 16 14 12 20 20 C 1.53783 * 113.61110 * 160.79613 * 10 9 8 21 21 C 1.53780 * 87.08128 * 220.01317 * 20 10 9 22 22 C 1.53777 * 113.61842 * 63.29731 * 10 9 8 23 23 C 1.45919 * 107.78489 * 0.02562 * 4 3 2 24 24 C 1.39946 * 134.03271 * 180.02562 * 23 4 3 25 25 C 1.36462 * 119.64348 * 179.97438 * 24 23 4 26 26 C 1.38966 * 120.62161 * 0.02562 * 25 24 23 27 27 C 1.36586 * 120.81865 * 359.97438 * 26 25 24 28 28 C 1.37036 * 125.46166 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47097 * 270.02588 * 1 2 3 30 30 H 1.08997 * 109.47182 * 30.03168 * 1 2 3 31 31 H 1.09001 * 109.46535 * 150.02729 * 1 2 3 32 32 H 1.08999 * 109.46971 * 29.69633 * 5 4 3 33 33 H 1.09008 * 109.46948 * 149.69006 * 5 4 3 34 34 H 0.97001 * 119.99739 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.47062 * 300.19801 * 9 8 6 36 36 H 1.09002 * 109.47040 * 60.19819 * 9 8 6 37 37 H 0.96995 * 119.99637 * 114.87385 * 11 10 9 38 38 H 0.97005 * 119.99686 * 180.02562 * 15 14 12 39 39 H 1.09003 * 113.61601 * 334.56527 * 20 10 9 40 40 H 1.09001 * 113.61492 * 105.46732 * 20 10 9 41 41 H 1.08997 * 113.61945 * 270.88632 * 21 20 10 42 42 H 1.09000 * 113.61593 * 139.97394 * 21 20 10 43 43 H 1.08997 * 113.61392 * 254.52773 * 22 10 9 44 44 H 1.08998 * 113.61001 * 25.43395 * 22 10 9 45 45 H 1.08004 * 120.17822 * 359.94068 * 24 23 4 46 46 H 1.07998 * 119.68968 * 179.97438 * 25 24 23 47 47 H 1.08002 * 119.59267 * 179.97438 * 26 25 24 48 48 H 1.08001 * 120.07417 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2764 1.1393 0.0000 4 6 3.5323 0.7940 0.0005 5 6 4.7113 1.7326 0.0062 6 6 5.1114 2.0453 -1.4127 7 8 4.4990 1.5547 -2.3375 8 7 6.1490 2.8709 -1.6540 9 6 6.5375 3.1753 -3.0333 10 6 7.7373 4.1246 -3.0274 11 7 7.4052 5.4581 -2.5195 12 6 6.5309 6.2551 -3.2088 13 1 6.1640 5.9442 -4.1759 14 6 6.1159 7.4630 -2.6648 15 7 6.5626 7.8418 -1.4861 16 14 4.9227 8.5500 -3.6049 17 1 3.6574 7.8088 -3.8396 18 1 4.6401 9.7746 -2.8139 19 1 5.5223 8.9310 -4.9090 20 6 8.5134 4.1447 -4.3549 21 6 9.7984 4.2019 -3.5121 22 6 8.9989 3.5192 -2.3898 23 6 3.5937 -0.6639 0.0003 24 6 4.6398 -1.5934 0.0011 25 6 4.3566 -2.9283 0.0011 26 6 3.0399 -3.3726 -0.0002 27 6 2.0019 -2.4848 -0.0010 28 6 2.2601 -1.1162 0.0005 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3632 -0.8903 -0.5134 32 1 4.4388 2.6552 0.5186 33 1 5.5473 1.2626 0.5243 34 1 6.6385 3.2635 -0.9143 35 1 6.8069 2.2524 -3.5470 36 1 5.7024 3.6483 -3.5500 37 1 7.8047 5.7763 -1.6949 38 1 6.2724 8.6856 -1.1058 39 1 8.4115 3.2270 -4.9342 40 1 8.3402 5.0425 -4.9484 41 1 10.1156 5.2157 -3.2677 42 1 10.6075 3.5878 -3.9075 43 1 9.2177 3.9119 -1.3968 44 1 9.0298 2.4305 -2.4318 45 1 5.6658 -1.2561 0.0012 46 1 5.1634 -3.6463 0.0013 47 1 2.8348 -4.4329 -0.0006 48 1 0.9831 -2.8434 -0.0016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717151713.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:58 Heat of formation + Delta-G solvation = 86.240874 kcal Electronic energy + Delta-G solvation = -29369.207952 eV Core-core repulsion = 25426.442476 eV Total energy + Delta-G solvation = -3942.765476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.37600 -39.47804 -38.39008 -37.28546 -34.18577 -33.81424 -33.25208 -30.61918 -30.44958 -29.95902 -29.77961 -27.13626 -25.53405 -25.27715 -23.78522 -23.05151 -22.04564 -21.73603 -20.50656 -19.51679 -18.21172 -17.20259 -17.13191 -16.97220 -16.79932 -15.59888 -15.49050 -15.32646 -15.17988 -14.81793 -14.35002 -14.18986 -14.12689 -13.94362 -13.39064 -13.29718 -13.19839 -12.97636 -12.84836 -12.67342 -12.33250 -12.02047 -11.85038 -11.73249 -11.62834 -11.22643 -11.16656 -11.00176 -10.82321 -10.67065 -10.36804 -10.24791 -10.09942 -10.07114 -9.72151 -9.52200 -9.42163 -8.86917 -8.73264 -8.46467 -7.92141 -7.03561 -5.82047 -3.11512 0.86895 1.41854 2.28154 2.39378 3.03725 3.43401 3.47943 3.49668 3.60363 3.80949 4.27171 4.38811 4.53311 4.55038 4.82709 4.90018 5.03000 5.08358 5.14344 5.19403 5.23367 5.27912 5.28408 5.31956 5.35536 5.44471 5.46295 5.55546 5.60218 5.68437 5.79558 5.90263 6.06358 6.13561 6.19828 6.23033 6.32827 6.38963 6.40345 6.41110 6.56784 6.72209 6.73017 6.91955 6.96824 6.98747 7.08183 7.62407 7.70469 7.99931 8.37032 8.66650 9.48342 10.01699 10.37019 11.39947 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.002831 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.203221 B = 9886.772934 C =11526.503909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.410 5.410 3 N -0.238 5.238 4 C 0.127 3.873 5 C -0.065 4.065 6 C 0.515 3.485 7 O -0.543 6.543 8 N -0.704 5.704 9 C 0.122 3.878 10 C 0.174 3.826 11 N -0.699 5.699 12 C -0.236 4.236 13 H 0.070 0.930 14 C -0.008 4.008 15 N -0.931 5.931 16 Si 0.904 3.096 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.286 1.286 20 C -0.151 4.151 21 C -0.129 4.129 22 C -0.144 4.144 23 C -0.163 4.163 24 C -0.034 4.034 25 C -0.165 4.165 26 C -0.073 4.073 27 C -0.144 4.144 28 C 0.128 3.872 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.401 0.599 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.126 0.874 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.130 -21.167 6.105 22.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.198 5.198 3 N -0.050 5.050 4 C -0.051 4.051 5 C -0.107 4.107 6 C 0.299 3.701 7 O -0.421 6.421 8 N -0.354 5.354 9 C -0.005 4.005 10 C 0.081 3.919 11 N -0.340 5.340 12 C -0.366 4.366 13 H 0.088 0.912 14 C -0.204 4.204 15 N -0.579 5.579 16 Si 0.735 3.265 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.213 1.213 20 C -0.192 4.192 21 C -0.166 4.166 22 C -0.182 4.182 23 C -0.171 4.171 24 C -0.055 4.055 25 C -0.185 4.185 26 C -0.093 4.093 27 C -0.166 4.166 28 C 0.013 3.987 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.235 0.765 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.221 0.779 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.144 0.856 46 H 0.143 0.857 47 H 0.144 0.856 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.760 -20.391 5.346 21.611 hybrid contribution -0.086 0.424 0.045 0.435 sum -4.846 -19.968 5.391 21.242 Atomic orbital electron populations 1.21713 0.74208 1.04229 1.02753 1.48083 1.05724 1.01024 1.64940 1.76607 1.02074 1.08147 1.18214 1.22670 0.92321 0.91384 0.98764 1.20073 0.94324 0.99518 0.96803 1.20116 0.80366 0.79373 0.90249 1.90704 1.53044 1.52491 1.45822 1.45702 1.32603 1.47127 1.09920 1.21849 0.99337 0.97469 0.81801 1.20810 0.89703 0.87005 0.94376 1.42046 1.52948 1.10650 1.28318 1.19046 1.18472 0.99048 1.00079 0.91241 1.24710 1.00398 0.98529 0.96760 1.69639 1.47883 1.23260 1.17121 0.86318 0.81312 0.80020 0.78865 1.21202 1.21727 1.21253 1.23317 0.96694 1.01454 0.97703 1.22632 0.96021 1.00698 0.97249 1.23141 0.97095 0.99342 0.98603 1.19713 0.93188 0.92578 1.11646 1.20355 0.97824 0.92058 0.95238 1.20618 0.96659 0.95328 1.05853 1.20672 0.92293 0.99133 0.97236 1.19763 0.99873 0.88836 1.08130 1.18830 0.90648 0.89600 0.99615 0.91357 0.89369 0.89983 0.86628 0.86789 0.76485 0.92809 0.91404 0.77911 0.93455 0.91342 0.90768 0.90055 0.92768 0.91625 0.90422 0.85609 0.85705 0.85567 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.05 11.40 59.85 0.68 1.73 16 2 N -0.41 -5.80 4.05 -65.47 -0.27 -6.07 16 3 N -0.24 -4.00 12.40 34.84 0.43 -3.56 16 4 C 0.13 1.98 5.93 -80.19 -0.48 1.50 16 5 C -0.07 -0.88 6.29 -29.04 -0.18 -1.06 16 6 C 0.52 8.84 7.82 -10.99 -0.09 8.75 16 7 O -0.54 -11.57 16.03 5.56 0.09 -11.48 16 8 N -0.70 -11.64 5.42 -60.29 -0.33 -11.97 16 9 C 0.12 2.23 5.08 -4.04 -0.02 2.21 16 10 C 0.17 3.15 0.80 -131.00 -0.11 3.05 16 11 N -0.70 -15.88 5.19 -46.48 -0.24 -16.12 16 12 C -0.24 -6.19 9.05 -15.06 -0.14 -6.33 16 13 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 14 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 15 N -0.93 -26.91 13.07 55.49 0.73 -26.19 16 16 Si 0.90 22.33 29.55 -169.99 -5.02 17.31 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 C -0.15 -2.57 7.28 -25.92 -0.19 -2.76 16 21 C -0.13 -1.96 7.99 -25.92 -0.21 -2.16 16 22 C -0.14 -2.12 7.04 -25.92 -0.18 -2.31 16 23 C -0.16 -2.34 6.33 -105.21 -0.67 -3.01 16 24 C -0.03 -0.40 10.07 -39.58 -0.40 -0.80 16 25 C -0.16 -1.61 9.97 -39.95 -0.40 -2.01 16 26 C -0.07 -0.67 9.96 -39.91 -0.40 -1.07 16 27 C -0.14 -1.52 9.97 -39.79 -0.40 -1.91 16 28 C 0.13 1.75 6.87 -84.18 -0.58 1.17 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.11 1.09 8.14 -51.92 -0.42 0.67 16 34 H 0.40 5.98 8.30 -40.82 -0.34 5.64 16 35 H 0.05 0.93 8.01 -51.93 -0.42 0.51 16 36 H 0.07 1.49 7.80 -51.93 -0.41 1.08 16 37 H 0.39 9.32 7.87 -40.82 -0.32 9.00 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.07 1.03 8.01 -51.93 -0.42 0.61 16 40 H 0.07 1.42 7.87 -51.93 -0.41 1.01 16 41 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 44 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 45 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 46 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 48 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 403.80 15.07 6.09 6.09 Total: -1.00 -34.69 403.80 -9.70 -44.39 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -7.34 Total: 12.92 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -3.83 Total: -5.31 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: 0.32 Total: -63.91 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.69 -9.70 -44.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717151713.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.633 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds