Wall clock time and date at job start Wed Apr 1 2020 03:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.39869 * 125.45619 * 2 1 4 4 C 1.30246 * 110.08274 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.10609 * 180.25620 * 4 3 2 6 6 C 1.50699 * 109.47656 * 269.69241 * 5 4 3 7 7 O 1.21279 * 119.99833 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00301 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00045 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46826 * 180.19887 * 9 8 6 11 11 N 1.46506 * 112.84824 * 292.09761 * 10 9 8 12 12 C 1.36929 * 119.99966 * 294.86956 * 11 10 9 13 13 H 1.08002 * 120.00719 * 353.76570 * 12 11 10 14 14 C 1.38819 * 120.00145 * 173.77126 * 12 11 10 15 15 N 1.31618 * 119.99373 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00242 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47412 * 59.99920 * 16 14 12 18 18 H 1.48503 * 109.47168 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47128 * 299.99813 * 16 14 12 20 20 C 1.53783 * 113.61110 * 160.79613 * 10 9 8 21 21 C 1.53780 * 87.08128 * 220.01317 * 20 10 9 22 22 C 1.53777 * 113.61842 * 63.29731 * 10 9 8 23 23 C 1.45919 * 107.78489 * 0.02562 * 4 3 2 24 24 C 1.39946 * 134.03271 * 180.02562 * 23 4 3 25 25 C 1.36462 * 119.64348 * 179.97438 * 24 23 4 26 26 C 1.38966 * 120.62161 * 0.02562 * 25 24 23 27 27 C 1.36586 * 120.81865 * 359.97438 * 26 25 24 28 28 C 1.37036 * 125.46166 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47097 * 270.02588 * 1 2 3 30 30 H 1.08997 * 109.47182 * 30.03168 * 1 2 3 31 31 H 1.09001 * 109.46535 * 150.02729 * 1 2 3 32 32 H 1.08999 * 109.46971 * 29.69633 * 5 4 3 33 33 H 1.09008 * 109.46948 * 149.69006 * 5 4 3 34 34 H 0.97001 * 119.99739 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.47062 * 300.19801 * 9 8 6 36 36 H 1.09002 * 109.47040 * 60.19819 * 9 8 6 37 37 H 0.96995 * 119.99637 * 114.87385 * 11 10 9 38 38 H 0.97005 * 119.99686 * 180.02562 * 15 14 12 39 39 H 1.09003 * 113.61601 * 334.56527 * 20 10 9 40 40 H 1.09001 * 113.61492 * 105.46732 * 20 10 9 41 41 H 1.08997 * 113.61945 * 270.88632 * 21 20 10 42 42 H 1.09000 * 113.61593 * 139.97394 * 21 20 10 43 43 H 1.08997 * 113.61392 * 254.52773 * 22 10 9 44 44 H 1.08998 * 113.61001 * 25.43395 * 22 10 9 45 45 H 1.08004 * 120.17822 * 359.94068 * 24 23 4 46 46 H 1.07998 * 119.68968 * 179.97438 * 25 24 23 47 47 H 1.08002 * 119.59267 * 179.97438 * 26 25 24 48 48 H 1.08001 * 120.07417 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2764 1.1393 0.0000 4 6 3.5323 0.7940 0.0005 5 6 4.7113 1.7326 0.0062 6 6 5.1114 2.0453 -1.4127 7 8 4.4990 1.5547 -2.3375 8 7 6.1490 2.8709 -1.6540 9 6 6.5375 3.1753 -3.0333 10 6 7.7373 4.1246 -3.0274 11 7 7.4052 5.4581 -2.5195 12 6 6.5309 6.2551 -3.2088 13 1 6.1640 5.9442 -4.1759 14 6 6.1159 7.4630 -2.6648 15 7 6.5626 7.8418 -1.4861 16 14 4.9227 8.5500 -3.6049 17 1 3.6574 7.8088 -3.8396 18 1 4.6401 9.7746 -2.8139 19 1 5.5223 8.9310 -4.9090 20 6 8.5134 4.1447 -4.3549 21 6 9.7984 4.2019 -3.5121 22 6 8.9989 3.5192 -2.3898 23 6 3.5937 -0.6639 0.0003 24 6 4.6398 -1.5934 0.0011 25 6 4.3566 -2.9283 0.0011 26 6 3.0399 -3.3726 -0.0002 27 6 2.0019 -2.4848 -0.0010 28 6 2.2601 -1.1162 0.0005 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3632 -0.8903 -0.5134 32 1 4.4388 2.6552 0.5186 33 1 5.5473 1.2626 0.5243 34 1 6.6385 3.2635 -0.9143 35 1 6.8069 2.2524 -3.5470 36 1 5.7024 3.6483 -3.5500 37 1 7.8047 5.7763 -1.6949 38 1 6.2724 8.6856 -1.1058 39 1 8.4115 3.2270 -4.9342 40 1 8.3402 5.0425 -4.9484 41 1 10.1156 5.2157 -3.2677 42 1 10.6075 3.5878 -3.9075 43 1 9.2177 3.9119 -1.3968 44 1 9.0298 2.4305 -2.4318 45 1 5.6658 -1.2561 0.0012 46 1 5.1634 -3.6463 0.0013 47 1 2.8348 -4.4329 -0.0006 48 1 0.9831 -2.8434 -0.0016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717151713.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:57 Heat of formation + Delta-G solvation = 63.009587 kcal Electronic energy + Delta-G solvation = -29370.215336 eV Core-core repulsion = 25426.442476 eV Total energy + Delta-G solvation = -3943.772860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.30932 -40.88794 -39.79609 -38.11575 -35.32367 -35.19555 -35.08849 -32.00241 -31.44481 -31.25446 -30.75046 -28.51673 -26.69914 -26.50690 -25.61554 -23.92051 -23.21829 -22.78993 -21.77472 -20.62334 -19.68268 -19.10871 -18.20645 -18.00431 -17.88417 -17.02245 -16.60192 -16.42721 -16.32663 -16.08968 -15.87993 -15.58503 -15.11170 -15.00695 -14.94306 -14.68623 -14.25320 -14.21242 -13.86377 -13.78662 -13.51653 -13.13173 -13.01614 -12.93035 -12.89422 -12.72119 -12.61250 -12.55424 -12.21280 -11.94510 -11.92978 -11.67678 -11.57942 -11.46398 -11.14870 -10.92047 -10.83827 -10.65593 -9.93740 -9.63211 -8.97616 -8.79205 -7.94394 -5.20207 0.00710 0.58992 1.33217 1.43244 1.45281 1.46171 1.50022 1.68383 2.41123 2.54286 2.89970 3.33088 3.37808 3.48650 3.70258 3.76949 3.84028 3.91907 4.03160 4.10805 4.13976 4.17490 4.26024 4.31984 4.37198 4.43786 4.49094 4.55568 4.61904 4.65810 4.69120 4.86272 4.92176 4.95581 4.97239 5.03745 5.09911 5.16806 5.33155 5.41161 5.44393 5.53257 5.54654 5.62793 5.65124 5.73730 5.94415 6.14846 6.30655 6.62084 6.65911 7.32044 7.36985 8.11579 8.35404 9.27776 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.002831 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.203221 B = 9886.772934 C =11526.503909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.419 5.419 3 N -0.286 5.286 4 C 0.109 3.891 5 C -0.057 4.057 6 C 0.515 3.485 7 O -0.589 6.589 8 N -0.697 5.697 9 C 0.131 3.869 10 C 0.159 3.841 11 N -0.704 5.704 12 C -0.222 4.222 13 H 0.062 0.938 14 C -0.065 4.065 15 N -0.960 5.960 16 Si 0.953 3.047 17 H -0.291 1.291 18 H -0.294 1.294 19 H -0.280 1.280 20 C -0.152 4.152 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.193 4.193 24 C -0.052 4.052 25 C -0.161 4.161 26 C -0.067 4.067 27 C -0.151 4.151 28 C 0.104 3.896 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.156 0.844 34 H 0.411 0.589 35 H 0.070 0.930 36 H 0.023 0.977 37 H 0.379 0.621 38 H 0.249 0.751 39 H 0.093 0.907 40 H 0.044 0.956 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.107 0.893 45 H 0.141 0.859 46 H 0.155 0.845 47 H 0.163 0.837 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.071 -24.504 6.518 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.208 5.208 3 N -0.099 5.099 4 C -0.068 4.068 5 C -0.099 4.099 6 C 0.301 3.699 7 O -0.469 6.469 8 N -0.347 5.347 9 C 0.005 3.995 10 C 0.067 3.933 11 N -0.344 5.344 12 C -0.354 4.354 13 H 0.080 0.920 14 C -0.257 4.257 15 N -0.610 5.610 16 Si 0.784 3.216 17 H -0.218 1.218 18 H -0.220 1.220 19 H -0.206 1.206 20 C -0.192 4.192 21 C -0.158 4.158 22 C -0.162 4.162 23 C -0.201 4.201 24 C -0.072 4.072 25 C -0.180 4.180 26 C -0.087 4.087 27 C -0.173 4.173 28 C -0.011 4.011 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.125 0.875 32 H 0.138 0.862 33 H 0.173 0.827 34 H 0.247 0.753 35 H 0.088 0.912 36 H 0.041 0.959 37 H 0.212 0.788 38 H 0.058 0.942 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.126 0.874 45 H 0.158 0.842 46 H 0.173 0.827 47 H 0.181 0.819 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.679 -23.752 5.751 24.713 hybrid contribution -0.429 1.282 -0.147 1.360 sum -4.108 -22.469 5.604 23.519 Atomic orbital electron populations 1.22011 0.72344 1.05138 1.04156 1.48379 1.06853 1.00639 1.64900 1.76465 1.03207 1.10361 1.19902 1.22984 0.92361 0.92642 0.98845 1.20130 0.95353 0.99996 0.94382 1.20717 0.79490 0.78364 0.91338 1.90678 1.54411 1.54247 1.47606 1.45657 1.32664 1.46824 1.09541 1.21650 0.97607 0.97694 0.82598 1.21113 0.90958 0.85038 0.96164 1.42081 1.52264 1.12220 1.27795 1.19226 1.17529 0.99035 0.99639 0.91963 1.25281 1.02538 1.00106 0.97817 1.69745 1.49505 1.23432 1.18334 0.85515 0.79509 0.78498 0.78069 1.21803 1.22021 1.20599 1.23351 0.97547 1.01305 0.97002 1.22558 0.96141 1.00320 0.96782 1.23097 0.93701 1.00825 0.98528 1.20038 0.94551 0.92332 1.13176 1.20664 0.98040 0.92648 0.95830 1.21069 0.97991 0.95071 1.03880 1.21178 0.91705 1.00798 0.95043 1.20174 1.01802 0.87585 1.07707 1.19332 0.90617 0.90685 1.00433 0.89681 0.90051 0.87474 0.86186 0.82681 0.75347 0.91228 0.95865 0.78789 0.94158 0.88902 0.93696 0.92089 0.89582 0.91112 0.87446 0.84151 0.82699 0.81901 0.83528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.92 11.40 127.77 1.46 3.38 16 2 N -0.42 -12.05 4.05 -361.04 -1.46 -13.51 16 3 N -0.29 -9.99 12.40 -43.70 -0.54 -10.53 16 4 C 0.11 3.46 5.93 44.78 0.27 3.73 16 5 C -0.06 -1.53 6.29 29.10 0.18 -1.35 16 6 C 0.51 17.75 7.82 87.66 0.69 18.44 16 7 O -0.59 -25.75 16.03 -3.03 -0.05 -25.80 16 8 N -0.70 -22.76 5.42 -463.06 -2.51 -25.27 16 9 C 0.13 4.79 5.08 86.38 0.44 5.23 16 10 C 0.16 5.62 0.80 4.13 0.00 5.62 16 11 N -0.70 -32.29 5.19 -300.95 -1.56 -33.85 16 12 C -0.22 -11.93 9.05 84.04 0.76 -11.17 16 13 H 0.06 3.38 7.83 -2.91 -0.02 3.36 16 14 C -0.06 -3.64 5.50 84.86 0.47 -3.18 16 15 N -0.96 -56.64 13.07 21.65 0.28 -56.36 16 16 Si 0.95 47.01 29.55 68.60 2.03 49.04 16 17 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 18 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 19 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 20 C -0.15 -4.96 7.28 31.12 0.23 -4.74 16 21 C -0.12 -3.37 7.99 31.12 0.25 -3.12 16 22 C -0.12 -3.30 7.04 31.12 0.22 -3.08 16 23 C -0.19 -5.48 6.33 -20.24 -0.13 -5.61 16 24 C -0.05 -1.11 10.07 22.27 0.22 -0.89 16 25 C -0.16 -2.62 9.97 22.03 0.22 -2.40 16 26 C -0.07 -1.00 9.96 22.06 0.22 -0.78 16 27 C -0.15 -2.84 9.97 22.13 0.22 -2.62 16 28 C 0.10 2.78 6.87 39.21 0.27 3.05 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.16 2.69 8.14 -2.38 -0.02 2.67 16 34 H 0.41 11.83 8.30 -92.71 -0.77 11.06 16 35 H 0.07 2.32 8.01 -2.39 -0.02 2.31 16 36 H 0.02 1.05 7.80 -2.39 -0.02 1.03 16 37 H 0.38 18.44 7.87 -92.71 -0.73 17.71 16 38 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 39 H 0.09 2.57 8.01 -2.39 -0.02 2.56 16 40 H 0.04 1.72 7.87 -2.39 -0.02 1.70 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.07 1.86 8.09 -2.39 -0.02 1.84 16 44 H 0.11 2.30 8.10 -2.39 -0.02 2.28 16 45 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 46 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 47 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 48 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -79.39 403.80 1.65 -77.74 By element: Atomic # 1 Polarization: 38.52 SS G_CDS: -0.52 Total: 38.01 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 5.98 Total: 0.53 kcal Atomic # 7 Polarization: -133.72 SS G_CDS: -5.79 Total: -139.52 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.05 Total: -25.80 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -79.39 1.65 -77.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717151713.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.751 kcal (2) G-P(sol) polarization free energy of solvation -79.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds